|
|
Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 821 |
| Cds size | 810 |
| Stop | 0 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622924204.0975325-UTR-S-dermatodea_contig11460:4824..4834 | 1622924204.0975325-UTR-S-dermatodea_contig11460:4824..4834 | Saccorhiza dermatodea SderLu1190fm monoicous | UTR | S-dermatodea_contig11460 4825..4834 + |
| 1694079090.3976388-UTR-S-dermatodea_contig11460:4824..4834 | 1694079090.3976388-UTR-S-dermatodea_contig11460:4824..4834 | Saccorhiza dermatodea SderLu1190fm monoicous | UTR | S-dermatodea_contig11460 4825..4834 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622924204.1062074-CDS-S-dermatodea_contig11460:4834..5644 | 1622924204.1062074-CDS-S-dermatodea_contig11460:4834..5644 | Saccorhiza dermatodea SderLu1190fm monoicous | CDS | S-dermatodea_contig11460 4835..5644 + |
| 1694079090.4168613-CDS-S-dermatodea_contig11460:4834..5644 | 1694079090.4168613-CDS-S-dermatodea_contig11460:4834..5644 | Saccorhiza dermatodea SderLu1190fm monoicous | CDS | S-dermatodea_contig11460 4835..5644 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11460.946.1 >prot_S-dermatodea_contig11460.946.1 ID=prot_S-dermatodea_contig11460.946.1|Name=mRNA_S-dermatodea_contig11460.946.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=270bp
MRKHHHRVSRASSSSPSLSSSSSSSTIRSLDDTTFRTAPTPPLADAATRQ
PKGKDRKTPRGGRRGGRSTESWREDQEEVVLLPSLDEARRAFEAQHQQQQ
QQESMPAISHENAASPQHNALPGNSASPRGGEEEGEIVRPLQHSSSTGAV
VAAAPATMTAETPPDPVALGVSFVGDVAEHSPESLLSSGEAGSADDVSLK
DEAAPPPPPQPACPPPVAASDGRERSARCNEAEATSTETTEGALPGELKV
ERGSRGVPLAPASPGGHAAH back to topmRNA from alignment at S-dermatodea_contig11460:4825..5644+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig11460.946.1 ID=mRNA_S-dermatodea_contig11460.946.1|Name=mRNA_S-dermatodea_contig11460.946.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=820bp|location=Sequence derived from alignment at S-dermatodea_contig11460:4825..5644+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGAACGAAAGATGCGAAAACATCACCATCGCGTATCACGGGCATCATCAT
CATCACCTTCATTGTCATCATCTTCTTCATCGTCAACAATCAGGTCGCTT
GATGACACGACGTTCCGGACGGCTCCCACACCGCCGCTGGCCGACGCCGC
CACCAGGCAGCCGAAAGGGAAGGACAGGAAGACCCCCCGAGGAGGAAGAC
GAGGAGGAAGAAGCACCGAGTCGTGGCGCGAAGATCAAGAAGAGGTAGTC
CTCCTGCCCAGCCTTGACGAGGCGCGCCGTGCGTTCGAGGCGCAGCACCA
ACAGCAGCAACAGCAGGAGTCGATGCCCGCCATCTCCCACGAAAATGCAG
CGAGTCCGCAGCACAACGCTCTTCCGGGCAACAGCGCGTCGCCGCGGGGG
GGAGAGGAGGAGGGAGAGATCGTGCGACCATTGCAACACTCGAGCTCCAC
CGGAGCGGTAGTGGCAGCCGCGCCAGCGACGATGACGGCGGAGACACCCC
CCGACCCTGTGGCACTGGGGGTGTCTTTCGTAGGCGATGTTGCAGAACAC
TCGCCCGAATCCTTGTTGTCATCGGGGGAGGCTGGCTCCGCCGATGATGT
TTCCCTCAAGGACGAGGCAGCTCCACCACCGCCGCCCCAGCCAGCCTGCC
CTCCCCCCGTTGCCGCCTCAGACGGGCGAGAAAGGAGCGCGCGATGCAAC
GAAGCAGAAGCAACATCAACAGAAACGACAGAAGGAGCTCTGCCGGGGGA
GTTGAAGGTGGAAAGAGGCTCACGCGGCGTCCCGCTCGCGCCGGCATCCC
CGGGGGGGCACGCCGCCCAC back to topCoding sequence (CDS) from alignment at S-dermatodea_contig11460:4825..5644+ >mRNA_S-dermatodea_contig11460.946.1 ID=mRNA_S-dermatodea_contig11460.946.1|Name=mRNA_S-dermatodea_contig11460.946.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1620bp|location=Sequence derived from alignment at S-dermatodea_contig11460:4825..5644+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGAAAACATCACCATCGCGTATCACGGGCATCATCATCATCACCTTC
ATTGTCATCATCTTCTTCATCGTCAACAATCAGGTCGCTTGATGACACGA
CGTTCCGGACGGCTCCCACACCGCCGCTGGCCGACGCCGCCACCAGGCAG
CCGAAAGGGAAGGACAGGAAGACCCCCCGAGGAGGAAGACGAGGAGGAAG
AAGCACCGAGTCGTGGCGCGAAGATCAAGAAGAGGTAGTCCTCCTGCCCA
GCCTTGACGAGGCGCGCCGTGCGTTCGAGGCGCAGCACCAACAGCAGCAA
CAGCAGGAGTCGATGCCCGCCATCTCCCACGAAAATGCAGCGAGTCCGCA
GCACAACGCTCTTCCGGGCAACAGCGCGTCGCCGCGGGGGGGAGAGGAGG
AGGGAGAGATCGTGCGACCATTGCAACACTCGAGCTCCACCGGAGCGGTA
GTGGCAGCCGCGCCAGCGACGATGACGGCGGAGACACCCCCCGACCCTGT
GGCACTGGGGGTGTCTTTCGTAGGCGATGTTGCAGAACACTCGCCCGAAT
CCTTGTTGTCATCGGGGGAGGCTGGCTCCGCCGATGATGTTTCCCTCAAG
GACGAGGCAGCTCCACCACCGCCGCCCCAGCCAGCCTGCCCTCCCCCCGT
TGCCGCCTCAGACGGGCGAGAAAGGAGCGCGCGATGCAACGAAGCAGAAG
CAACATCAACAGAAACGACAGAAGGAGCTCTGCCGGGGGAGTTGAAGGTG
GAAAGAGGCTCACGCGGCGTCCCGCTCGCGCCGGCATCCCCGGGGGGGCA
CGCCGCCCACATGCGAAAACATCACCATCGCGTATCACGGGCATCATCAT
CATCACCTTCATTGTCATCATCTTCTTCATCGTCAACAATCAGGTCGCTT
GATGACACGACGTTCCGGACGGCTCCCACACCGCCGCTGGCCGACGCCGC
CACCAGGCAGCCGAAAGGGAAGGACAGGAAGACCCCCCGAGGAGGAAGAC
GAGGAGGAAGAAGCACCGAGTCGTGGCGCGAAGATCAAGAAGAGGTAGTC
CTCCTGCCCAGCCTTGACGAGGCGCGCCGTGCGTTCGAGGCGCAGCACCA
ACAGCAGCAACAGCAGGAGTCGATGCCCGCCATCTCCCACGAAAATGCAG
CGAGTCCGCAGCACAACGCTCTTCCGGGCAACAGCGCGTCGCCGCGGGGG
GGAGAGGAGGAGGGAGAGATCGTGCGACCATTGCAACACTCGAGCTCCAC
CGGAGCGGTAGTGGCAGCCGCGCCAGCGACGATGACGGCGGAGACACCCC
CCGACCCTGTGGCACTGGGGGTGTCTTTCGTAGGCGATGTTGCAGAACAC
TCGCCCGAATCCTTGTTGTCATCGGGGGAGGCTGGCTCCGCCGATGATGT
TTCCCTCAAGGACGAGGCAGCTCCACCACCGCCGCCCCAGCCAGCCTGCC
CTCCCCCCGTTGCCGCCTCAGACGGGCGAGAAAGGAGCGCGCGATGCAAC
GAAGCAGAAGCAACATCAACAGAAACGACAGAAGGAGCTCTGCCGGGGGA
GTTGAAGGTGGAAAGAGGCTCACGCGGCGTCCCGCTCGCGCCGGCATCCC
CGGGGGGGCACGCCGCCCAC back to top
|