mRNA_S-dermatodea_contig11452.940.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig11452.940.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI) HSP 1 Score: 155 bits (391), Expect = 9.130e-42 Identity = 76/91 (83.52%), Postives = 83/91 (91.21%), Query Frame = 1
Query: 1 QVGERDYRIFVENLNNVADTLAVDIITSVVSETHKEGLRIETDRGDLLEGGSVLQFDSCYTGIPMSRRLRVKNTTVKAMDVSLSSDRPGEV 273
+VGERDYRIFVENLNNVADTLAVDI+TSVVSE H+EGLRIETD+ LLEGGSVL FD CYTG+P+ R+LRVKNTTV AMDVSL SDRPGEV
Sbjct: 267 EVGERDYRIFVENLNNVADTLAVDILTSVVSEDHREGLRIETDKDGLLEGGSVLHFDKCYTGMPVWRKLRVKNTTVHAMDVSLGSDRPGEV 357
BLAST of mRNA_S-dermatodea_contig11452.940.1 vs. uniprot
Match: A0A6H5L1W0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1W0_9PHAE) HSP 1 Score: 152 bits (385), Expect = 4.070e-41 Identity = 74/91 (81.32%), Postives = 84/91 (92.31%), Query Frame = 1
Query: 1 QVGERDYRIFVENLNNVADTLAVDIITSVVSETHKEGLRIETDRGDLLEGGSVLQFDSCYTGIPMSRRLRVKNTTVKAMDVSLSSDRPGEV 273
+VG+RDYRIFVENLNNVADTLAVDI+TSVVSE H+EGLRIETD+ LLEGGSVLQFD C+TG+P+ R+LRVKNTTV +MDVSL SDRPGEV
Sbjct: 289 EVGQRDYRIFVENLNNVADTLAVDILTSVVSEGHREGLRIETDKDGLLEGGSVLQFDKCFTGMPVWRKLRVKNTTVHSMDVSLGSDRPGEV 379
BLAST of mRNA_S-dermatodea_contig11452.940.1 vs. uniprot
Match: A0A024GCH3_9STRA (Uncharacterized protein n=8 Tax=Albugo candida TaxID=65357 RepID=A0A024GCH3_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 8.580e-17 Identity = 42/96 (43.75%), Postives = 59/96 (61.46%), Query Frame = 1
Query: 1 QVGERDYRIFVENLNNVADTLAVDIITSVVSETHKEGLRIETDRGDLLEGGSVLQFDSCYTGIPMSRRLRVKNTTVKAMDVSLSSDRPGEVRCDMR 288
+VGER + I V+NL++ A+ + + T E H+EGL I G LL GS L F CY+GIP S+ L ++NTT + V LSSDRP EV +++
Sbjct: 433 EVGERSFEIQVQNLHDSANVRTLKVHTVANKEQHREGLLIRVPGGSLLLSGSKLDFGDCYSGIPTSKTLLLRNTTENVLQVELSSDRPKEVSFELK 528
BLAST of mRNA_S-dermatodea_contig11452.940.1 vs. uniprot
Match: A0A6G0WUD1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WUD1_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 5.550e-16 Identity = 40/96 (41.67%), Postives = 57/96 (59.38%), Query Frame = 1
Query: 1 QVGERDYRIFVENLNNVADTLAVDIITSVVSETHKEGLRIETDRGDLLEGGSVLQFDSCYTGIPMSRRLRVKNTTVKAMDVSLSSDRPGEVRCDMR 288
+VGE+ + I +NL++ + V I E H+EGL I G L GGS+L F CYTGIP S+ L +KNTT A+ + L SDRP E+ +++
Sbjct: 373 EVGEQFFEILAQNLHDARNVKRVKIHAIASKEHHREGLSIREPNGSYLMGGSLLDFGDCYTGIPTSKALVLKNTTEAALHIELLSDRPKEITFELK 468
BLAST of mRNA_S-dermatodea_contig11452.940.1 vs. uniprot
Match: A0A485LAB2_9STRA (Aste57867_18395 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LAB2_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 7.580e-16 Identity = 41/96 (42.71%), Postives = 57/96 (59.38%), Query Frame = 1
Query: 1 QVGERDYRIFVENLNNVADTLAVDIITSVVSETHKEGLRIETDRGDLLEGGSVLQFDSCYTGIPMSRRLRVKNTTVKAMDVSLSSDRPGEVRCDMR 288
+VGE+ + + V+NL++ + + I E H+EGL I G L GGSVL F CYTGIP S+ L VKN T A+ + L SDRP EV +++
Sbjct: 377 EVGEQFFEVLVQNLHDSRNVKTLKIHAIASKEHHREGLSIRDSNGSYLMGGSVLDFGDCYTGIPTSKVLVVKNMTEVALQIELLSDRPKEVTFELK 472
BLAST of mRNA_S-dermatodea_contig11452.940.1 vs. uniprot
Match: A0A835YT04_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT04_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 2.050e-13 Identity = 44/92 (47.83%), Postives = 54/92 (58.70%), Query Frame = 1
Query: 1 QVGERDYRIFVENLNNVADT--LAVDIITSVVSETHKEGLRIETDRGDLLEGGSVLQFDSCYTGIPMSRRLRVKNTTVKAMDVSLSSDRPGE 270
QVGERDYRI++ENLN++A + L VDI+T V+ F CY+G+ MSR+LRVKNTT MDV LSSD PGE
Sbjct: 1778 QVGERDYRIYMENLNDLATSNLLTVDILT-------------------------VVNFGDCYSGVLMSRKLRVKNTTQVPMDVRLSSDCPGE 1844
BLAST of mRNA_S-dermatodea_contig11452.940.1 vs. uniprot
Match: A0A6G0KZ72_9STRA (Uncharacterized protein n=7 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0KZ72_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 7.120e-13 Identity = 37/96 (38.54%), Postives = 56/96 (58.33%), Query Frame = 1
Query: 1 QVGERDYRIFVENLNNVADTLAVDIITSVVSETHKEGLRIETDRGDLLEGGSVLQFDSCYTGIPMSRRLRVKNTTVKAMDVSLSSDRPGEVRCDMR 288
++GER + I +NL++ + + I E H+EGL I+ G L GS L F CYTGIP S+ + ++N T A+ V L+SDRP EV +++
Sbjct: 357 EIGERFFEIQAQNLHDSRNVKTLKIHAITNQEHHREGLSIKEPSGSYLMSGSRLDFGDCYTGIPSSKVILMRNMTEVALHVELTSDRPKEVTFELK 452
BLAST of mRNA_S-dermatodea_contig11452.940.1 vs. uniprot
Match: G4YG66_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4YG66_PHYSP) HSP 1 Score: 72.0 bits (175), Expect = 1.340e-12 Identity = 37/95 (38.95%), Postives = 55/95 (57.89%), Query Frame = 1
Query: 4 VGERDYRIFVENLNNVADTLAVDIITSVVSETHKEGLRIETDRGDLLEGGSVLQFDSCYTGIPMSRRLRVKNTTVKAMDVSLSSDRPGEVRCDMR 288
+GER + I +NL++ + + I E H+EGL I+ G L GS L F CYTGIP S+ + ++N T A+ V L+SDRP EV +++
Sbjct: 307 IGERFFEIQAQNLHDSRNVKTLKIHAITNQEHHREGLSIKEPSGSYLMSGSRLDFGDCYTGIPSSKVILMRNMTEVALHVELTSDRPKEVTFELK 401 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11452.940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11452.940.1 >prot_S-dermatodea_contig11452.940.1 ID=prot_S-dermatodea_contig11452.940.1|Name=mRNA_S-dermatodea_contig11452.940.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=97bp QVGERDYRIFVENLNNVADTLAVDIITSVVSETHKEGLRIETDRGDLLEGback to top mRNA from alignment at S-dermatodea_contig11452:4904..5194- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig11452.940.1 ID=mRNA_S-dermatodea_contig11452.940.1|Name=mRNA_S-dermatodea_contig11452.940.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=291bp|location=Sequence derived from alignment at S-dermatodea_contig11452:4904..5194- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig11452:4904..5194- >mRNA_S-dermatodea_contig11452.940.1 ID=mRNA_S-dermatodea_contig11452.940.1|Name=mRNA_S-dermatodea_contig11452.940.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at S-dermatodea_contig11452:4904..5194- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |