mRNA_S-dermatodea_contig1141.913.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1141.913.1
Unique NamemRNA_S-dermatodea_contig1141.913.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1141.913.1 vs. uniprot
Match: D8LKL9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL9_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 4.410e-13
Identity = 42/85 (49.41%), Postives = 60/85 (70.59%), Query Frame = 1 
Query:    1 VISMAEEKRVAHLDVSCNPVDKAVADSICECLARPGCTLSSLVVKRCWLTDVAAAAIMTAVASNSILEVLDLSSNEIGGTSDFVA 255
            V+++AE K V HLD+S N VD+  A  +C+ L R    L SL+VK C ++ +A+AAIM AVA+N+ L+ L+LS N +GGTSD +A
Sbjct:  306 VLAIAEAKGVLHLDLSLNHVDRVSAGLLCKYLTRSS-GLVSLLVKSCGMSALASAAIMVAVATNTTLKTLNLSGNNMGGTSDLIA 389
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BLAST of mRNA_S-dermatodea_contig1141.913.1 vs. uniprot
Match: A0A6H5K9H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9H7_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 2.320e-5
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:   82 ICECLARPGCTLSSLVVKRCWLTDVAAAAIMTAVASNSILEVLDLSSNEIGGTSDFVA 255
            +CE L R    L SLVVK C ++ +A+A IM AVA+N+ L+ L+LS N +GGTSD +A
Sbjct:  191 LCEYLTRSS-GLFSLVVKSCGMSALASAEIMVAVATNTTLKTLNLSGNNMGGTSDLIA 247
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1141.913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKL9_ECTSI4.410e-1349.41Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5K9H7_9PHAE2.320e-551.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1141contigS-dermatodea_contig1141:15465..17209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue3.5e-10
Seed eggNOG ortholog2880.D8LKL9
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size281
Cds size270
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1141.913.1prot_S-dermatodea_contig1141.913.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1141 15465..17200 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924202.041226-CDS-S-dermatodea_contig1141:15464..154871622924202.041226-CDS-S-dermatodea_contig1141:15464..15487Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1141 15465..15487 -
1694079088.9460137-CDS-S-dermatodea_contig1141:15464..154871694079088.9460137-CDS-S-dermatodea_contig1141:15464..15487Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1141 15465..15487 -
1622924202.0490694-CDS-S-dermatodea_contig1141:16611..167911622924202.0490694-CDS-S-dermatodea_contig1141:16611..16791Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1141 16612..16791 -
1694079088.9581718-CDS-S-dermatodea_contig1141:16611..167911694079088.9581718-CDS-S-dermatodea_contig1141:16611..16791Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1141 16612..16791 -
1622924202.056613-CDS-S-dermatodea_contig1141:17133..172001622924202.056613-CDS-S-dermatodea_contig1141:17133..17200Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1141 17134..17200 -
1694079088.967114-CDS-S-dermatodea_contig1141:17133..172001694079088.967114-CDS-S-dermatodea_contig1141:17133..17200Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1141 17134..17200 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924202.0667686-UTR-S-dermatodea_contig1141:17200..172091622924202.0667686-UTR-S-dermatodea_contig1141:17200..17209Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1141 17201..17209 -
1694079088.9768713-UTR-S-dermatodea_contig1141:17200..172091694079088.9768713-UTR-S-dermatodea_contig1141:17200..17209Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1141 17201..17209 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1141.913.1

>prot_S-dermatodea_contig1141.913.1 ID=prot_S-dermatodea_contig1141.913.1|Name=mRNA_S-dermatodea_contig1141.913.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=90bp
MAEEKRVAHLDVSCNPVDKAVADSICECLARPGCTLSSLVVKRCWLTDVA
AAAIMTAVASNSILEVLDLSSNEIGGTSDFVAGSLASVDG
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mRNA from alignment at S-dermatodea_contig1141:15465..17209-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1141.913.1 ID=mRNA_S-dermatodea_contig1141.913.1|Name=mRNA_S-dermatodea_contig1141.913.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1745bp|location=Sequence derived from alignment at S-dermatodea_contig1141:15465..17209- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGATCTCCATGGCCGAAGAAAAGCGAGTGGCACACCTCGACGTGTCATG
TAACCCCGTGGATAAGGCGGTCGCCGGTGAGACGGCTGCGATGACTCCTT
CAACATTTTGTGTGTGTCTCGCTGCCGTGTGTATTAGCCTTGCTACCTCT
TATGACGACAATGTACGTGATTCCAGGTTATTTTGGTACGCGCTTTGGAG
CTCAGGTCCTTGCTTTCAAATGAACGTGTGGAATACAATACTTTCCCCAT
AGGGGAAGACAAGCCATGGGGAGGGCGATGTGTTTCACCTCGCCAAGAGC
TGCGTGACCCTACGCGGACGCATTGGCCCGTGCCTCCCATGACAACTATA
TCAATATATTCCTCGTTAAAAACGTATACAAACTCCTCCCACCCTTGATG
TACTTGCATGCAAAACAGACAGCATTTGCGAGTGCCTAGCTCGGCCCGGC
TGCACTCTGTCCTCTCTCGTGGTCAAGCGCTGCTGGTTAACTGACGTTGC
CGCGGCGGCGATTATGACGGCCGTGGCTAGCAATTCTATTCTAGAGGTTT
TGGATCTGAGCAGCAACGAAATCGGCGGCACGAGCGATTTTGTGGCGGGT
GAGACATACATGCCGAAGGTAGGTTAGATTACTATCATACTTATTAATAG
TACTGTTGTTTTAGACACGCCGGTGGTAGGTTAGATTGTTACCTTACCGC
GGTTTTCAGGGCAGGCGGTAGGACGCAGAGAAAACGGCGCTGCATCATTT
TTGCACGGCCGAGCTATCGACGCTCGGATAGTTTTGGGGCATGATACAAG
TCTGACGTGTTCGGGATACCCTGCGCGAAAAGGTTTAACAGCAATTCAAA
GATAAGGGGGGAGGGTGAGTTGTCGGCCGGCCAGCCACGATAATACTATA
TTAATGTTGCAATCCGGAACATATTGGCTGAACCTGGTAAACTCTGAACG
GGATCTGAGAAGGGCTGGCCAATCCGGCGCGAGCACAGCATAATGGGAAA
ACTCTAGGGCTGTGTATCGGCGCGAAGCGCCGATATTATAGATATCGGCA
AATCGGCGCAGCCGATATATTGATAAATGTACGATATATCGGCGAAGAGC
GAAGCGAGCCGGCGCCGCCACGGCCCCTCGGCTGGTGAGGGGCCCCGCTG
GAGGCGAAAACAATTACGGCAGTTGACTTCATTTCTCTTCAAAATCGGGC
CACAAATGACTACCGGAAGGGGGTGTCACCGGAGCATGGTTAGGTAGAAA
TTCGATTACATATGTTAGCAAAGCGGCGATAAACACTAACACTTGACACA
GTGCTTATATTCCTTTTTTTGAAACCATAAAAAAACAATTTGATTGATTT
GACTGGTGTCTGGTGTTGGTTAACAGTTAACAGCGACCCCTGGACATCCT
CACAGGGCTGGAACTAGCGCTATAGCCCCAGGAGAAAAGAGCCAATATAT
CGGTAAAGCTGTCAATCGATAAATACGATATATCGTATCAGACGATACAT
CGTTGTATATCGGGAACGATACACAGCCCTAAAAATCACCCTTTAACTCC
TGCGCAACAGACACAAAAAGCGATATTATTACCACCCTATATTTAGATGA
CTCAGTAACGCATATCGATAGAAAAACCGTGTTCCATGGCAGCGTTCAAC
TGAACACACCCACCATTCCCACTGCCCGCCGGCGACGTTTCACCCCGATT
ATCGGAACCCGTGCACTCCTAGGGTCCCTCGCCTCTGTAGATGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1141:15465..17209-

>mRNA_S-dermatodea_contig1141.913.1 ID=mRNA_S-dermatodea_contig1141.913.1|Name=mRNA_S-dermatodea_contig1141.913.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at S-dermatodea_contig1141:15465..17209- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCCGAAGAAAAGCGAGTGGCACACCTCGACGTGTCATGTAACCCCGT
GGATAAGGCGGTCGCCGATGGCCGAAGAAAAGCGAGTGGCACACCTCGAC
GTGTCATGTAACCCCGTGGATAAGGCGGTCGCCGACAGCATTTGCGAGTG
CCTAGCTCGGCCCGGCTGCACTCTGTCCTCTCTCGTGGTCAAGCGCTGCT
GGTTAACTGACGTTGCCGCGGCGGCGATTATGACGGCCGTGGCTAGCAAT
TCTATTCTAGAGGTTTTGGATCTGAGCAGCAACGAAATCGGCGGCACGAG
CGATTTTGTGGCGGACAGCATTTGCGAGTGCCTAGCTCGGCCCGGCTGCA
CTCTGTCCTCTCTCGTGGTCAAGCGCTGCTGGTTAACTGACGTTGCCGCG
GCGGCGATTATGACGGCCGTGGCTAGCAATTCTATTCTAGAGGTTTTGGA
TCTGAGCAGCAACGAAATCGGCGGCACGAGCGATTTTGTGGCGGGGTCCC
TCGCCTCTGTAGATGGGGGTCCCTCGCCTCTGTAGATGGG
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