mRNA_S-dermatodea_contig11393.900.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11393.900.1
Unique NamemRNA_S-dermatodea_contig11393.900.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11393.900.1 vs. uniprot
Match: D7G235_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G235_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 2.070e-81
Identity = 145/243 (59.67%), Postives = 168/243 (69.14%), Query Frame = 3 
Query:   60 DPSLFDELKGLLRDRVISATNGGDKDPEATKSRKRARKEELCVQGERVQFTYRYRRTLPRYTVLDYAGEDVEGNQVNRNSAN---------------------PGFRHLPLSESTLLVWVYRFDIDNPYATVPNEAALQFA-----PPAKLSQALNLETVRPDSRAATGST-NVQGGPRDAGILAWLWGGDKMTVAESRGG--GGVRQHFIGSAAWQGRPETAQGRDEEDDDIQRAIALSLAV 701
            D SLFDELK LLR+RVISAT  GDKD EA KSRKRARKEE+C+QGER+QFTYRYR+TLPRYTVL Y G+D+E  + NR S++                     P FRHLPLSESTLLVWVY FD D+PY  VPNEAALQFA     P A   +AL++E +   S A TG+T +VQGGPRD G+L WLWG        + GG  GGVRQHFIGSA+WQG+  + Q R+    DIQRAIALSLAV
Sbjct:   54 DASLFDELKLLLRERVISATGNGDKDAEAPKSRKRARKEEVCIQGERLQFTYRYRKTLPRYTVLSYTGDDIE--RANRGSSSAGSSKGKRCVGSNSXXXXXXXPAFRHLPLSESTLLVWVYPFDKDDPYRPVPNEAALQFASSTSTPAAADQEALDVEAIGRRSGAGTGATVDVQGGPRDTGLLTWLWGVGGEGGGSAAGGVKGGVRQHFIGSASWQGKSPSEQRREXXXXDIQRAIALSLAV 294
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BLAST of mRNA_S-dermatodea_contig11393.900.1 vs. uniprot
Match: A0A836CBI6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI6_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.920e-18
Identity = 51/129 (39.53%), Postives = 78/129 (60.47%), Query Frame = 3 
Query:   69 LFDELKGLLRDRVI-------SATNGGDKDPEATK----SRKRARKEELCVQGERVQFTYRYRRTLPRYTVLDYAGEDV--EGNQVNRNSANPGFRHLPLSESTLLVWVYRFDIDNPYATVPNEAALQF 416
            L++EL+ LL+D+VI       SA  G +++ ++T     SR++AR+ E CVQGE +QFT+R+R T P Y+++ +       +  Q     A P +  LPL+E+TLL WV++FD  NPYA +P E    F
Sbjct:   59 LWEELQRLLKDQVITPYLATPSAVTGDEEEEKSTDAISTSRRKARRGEKCVQGEGLQFTFRFRPTKPVYSIITFNSVPAATQQQQTASKQAAPAYASLPLNEATLLAWVFKFDPANPYAPLPTETVEVF 187
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11393.900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G235_ECTSI2.070e-8159.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBI6_9STRA1.920e-1839.53Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11393contigS-dermatodea_contig11393:6485..7445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size794
Cds size453
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11393.900.1prot_S-dermatodea_contig11393.900.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11393 6825..7445 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924201.1756415-UTR-S-dermatodea_contig11393:6484..68241622924201.1756415-UTR-S-dermatodea_contig11393:6484..6824Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11393 6485..6824 -
1694079088.4023836-UTR-S-dermatodea_contig11393:6484..68241694079088.4023836-UTR-S-dermatodea_contig11393:6484..6824Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11393 6485..6824 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924201.1901777-CDS-S-dermatodea_contig11393:6824..70391622924201.1901777-CDS-S-dermatodea_contig11393:6824..7039Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11393 6825..7039 -
1694079088.4130802-CDS-S-dermatodea_contig11393:6824..70391694079088.4130802-CDS-S-dermatodea_contig11393:6824..7039Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11393 6825..7039 -
1622924201.1976004-CDS-S-dermatodea_contig11393:7207..74451622924201.1976004-CDS-S-dermatodea_contig11393:7207..7445Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11393 7208..7445 -
1694079088.421078-CDS-S-dermatodea_contig11393:7207..74451694079088.421078-CDS-S-dermatodea_contig11393:7207..7445Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11393 7208..7445 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11393.900.1

>prot_S-dermatodea_contig11393.900.1 ID=prot_S-dermatodea_contig11393.900.1|Name=mRNA_S-dermatodea_contig11393.900.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=151bp
YGTPQICSEDLSYASPSVARTPRCSTSSRACCETVSSPPPTAETKTPRQQ
SQESAPGRRSCACRASASSLPTATGGPYPGTPCLTTRAKMSKVTKSIATV
PTQDFAIYLSQKARYWCGCTDSTSTIRTRRFRTKPLSSSHHQPSYPKRST
*
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mRNA from alignment at S-dermatodea_contig11393:6485..7445-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11393.900.1 ID=mRNA_S-dermatodea_contig11393.900.1|Name=mRNA_S-dermatodea_contig11393.900.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=961bp|location=Sequence derived from alignment at S-dermatodea_contig11393:6485..7445- (Saccorhiza dermatodea SderLu1190fm monoicous)
TATGGAACCCCGCAAATCTGTAGTGAAGATCTGTCCTATGCTTCTCCGTC
TGTCGCCAGGACCCCTCGTTGTTCGACGAGCTCAAGGGCCTGCTGCGAGA
CCGTGTCATCTCCGCCACCAACGGCGGAGACAAAGACCCCGAGGCAACAA
AGTCAAGAAAGCGCGCCCGGAAGGAGGAGTTGTGCGTGCAGGGCGAGCGC
GTCCAGTTTACCTACCGCTACCGGAGGACCCTACCCAGGTGTGTTCGTGC
GGACTTGATGTTATTTAACTTCGGTTTCTTGCCGACGCTTCGTGAACAGC
ACGTCGATACTTGTAGGTTAGTGCGGCAGTGGTGAGAGTTGGTATGCCGG
GTAAGCTCGAGGGGCTTGTCAGAAAGAAGTAACCGTTGCGTCGCGTCTCC
CACCAGGTACACCGTGCTTGACTACGCGGGCGAAGATGTCGAAGGTAACC
AAGTCAATCGCAACAGTGCCAACCCAGGATTTCGCCATCTACCTCTCTCA
GAAAGCACGCTATTGGTGTGGGTGTACCGATTCGACATCGACAATCCGTA
CGCGACGGTTCCGAACGAAGCCGCTCTCCAGTTCGCACCACCAGCCAAGC
TATCCCAAGCGCTCAACCTAGAGACCGTTCGACCGGATTCAAGGGCAGCG
ACAGGGAGCACGAATGTGCAGGGTGGTCCAAGAGACGCGGGTATCTTGGC
TTGGTTGTGGGGCGGGGACAAAATGACTGTAGCGGAGAGCAGAGGGGGCG
GAGGAGTTCGACAACATTTTATTGGAAGTGCTGCGTGGCAGGGCAGGCCC
GAAACGGCGCAAGGGCGGGATGAAGAGGACGATGACATTCAACGAGCAAT
TGCGTTGTCTTTAGCGGTGGCAGCGGGAACAGTAACAGATGGTCAGAATG
CCGACCAGGACGCTGTGCAAGTGGTGGATGATGATGTAGGGGTAGAGGAG
AGCAAAGGTGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11393:6485..7445-

>mRNA_S-dermatodea_contig11393.900.1 ID=mRNA_S-dermatodea_contig11393.900.1|Name=mRNA_S-dermatodea_contig11393.900.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at S-dermatodea_contig11393:6485..7445- (Saccorhiza dermatodea SderLu1190fm monoicous)
TATGGAACCCCGCAAATCTGTAGTGAAGATCTGTCCTATGCTTCTCCGTC
TGTCGCCAGGACCCCTCGTTGTTCGACGAGCTCAAGGGCCTGCTGCGAGA
CCGTGTCATCTCCGCCACCAACGGCGGAGACAAAGACCCCGAGGCAACAA
AGTCAAGAAAGCGCGCCCGGAAGGAGGAGTTGTGCGTGCAGGGCGAGCGC
GTCCAGTTTACCTACCGCTACCGGAGGACCCTACCCAGTATGGAACCCCG
CAAATCTGTAGTGAAGATCTGTCCTATGCTTCTCCGTCTGTCGCCAGGAC
CCCTCGTTGTTCGACGAGCTCAAGGGCCTGCTGCGAGACCGTGTCATCTC
CGCCACCAACGGCGGAGACAAAGACCCCGAGGCAACAAAGTCAAGAAAGC
GCGCCCGGAAGGAGGAGTTGTGCGTGCAGGGCGAGCGCGTCCAGTTTACC
TACCGCTACCGGAGGACCCTACCCAGGTACACCGTGCTTGACTACGCGGG
CGAAGATGTCGAAGGTAACCAAGTCAATCGCAACAGTGCCAACCCAGGAT
TTCGCCATCTACCTCTCTCAGAAAGCACGCTATTGGTGTGGGTGTACCGA
TTCGACATCGACAATCCGTACGCGACGGTTCCGAACGAAGCCGCTCTCCA
GTTCGCACCACCAGCCAAGCTATCCCAAGCGCTCAACCTAGGTACACCGT
GCTTGACTACGCGGGCGAAGATGTCGAAGGTAACCAAGTCAATCGCAACA
GTGCCAACCCAGGATTTCGCCATCTACCTCTCTCAGAAAGCACGCTATTG
GTGTGGGTGTACCGATTCGACATCGACAATCCGTACGCGACGGTTCCGAA
CGAAGCCGCTCTCCAGTTCGCACCACCAGCCAAGCTATCCCAAGCGCTCA
ACCTAG
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