mRNA_S-dermatodea_contig11389.897.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11389.897.1
Unique NamemRNA_S-dermatodea_contig11389.897.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11389.897.1 vs. uniprot
Match: D7G017_ECTSI (Tub domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G017_ECTSI)

HSP 1 Score: 352 bits (902), Expect = 3.090e-116
Identity = 180/245 (73.47%), Postives = 203/245 (82.86%), Query Frame = 1 
Query:    1 GMMLFHTLQDTHLRELKDIPTSSDSAVYLGCMIPNLLGTEFRQLDHRVDPRDAAVMEEIKDKGKNELGAVVYELNVMGRRAQTAYWVPNSMKVLLRRPVATQSSGADGISSEDDXXXXXXXXGGER---------QWAVNVESGVYDEPIIKRWEDAKEQFKPVFRPSSPLKTFRSLFGGAFDSEDDEQQRARQHYATLGSEGSDIITFETLRPSWNEVLHAWTLNFNGRVKIPSKKNFLVAPEK 708
            G MLFHTLQDTHLRELKDIPTSSDSAVYLGCM PNLLGTEFRQLDHRVDPRD+A ME +K+KG+NEL AVVYE NVMGR       VPN+MKVLLRRP+A+QSSG+DG+++++D    XXX  GE          QW V++E GV+DEPIIKRWED K + KP FRPSSPLKTFR++F     S+D E+QRA+QHYATLGSEGSDIITFETL PSWNEVLHAWTLNFNGRVKIPSKKNFLV+PEK
Sbjct:  264 GPMLFHTLQDTHLRELKDIPTSSDSAVYLGCMFPNLLGTEFRQLDHRVDPRDSAAMEYVKEKGRNELSAVVYEPNVMGR-------VPNAMKVLLRRPIASQSSGSDGLTADNDDGGGXXX--GEXXXXXXXXXGQWGVSMERGVWDEPIIKRWEDGKNRHKPAFRPSSPLKTFRNIFKNFESSDDPEEQRAQQHYATLGSEGSDIITFETLSPSWNEVLHAWTLNFNGRVKIPSKKNFLVSPEK 499
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BLAST of mRNA_S-dermatodea_contig11389.897.1 vs. uniprot
Match: A0A836CGA0_9STRA (Tubby C-terminal-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGA0_9STRA)

HSP 1 Score: 141 bits (356), Expect = 6.950e-36
Identity = 109/271 (40.22%), Postives = 136/271 (50.18%), Query Frame = 1 
Query:    1 GMMLFHTLQDTHLRELKDIPTSSDSAVYLGCMIPNLLGTEFRQLDHRVDPRDAAVMEEIKDKGKNELGAVVYELNVMGRRAQTAYWVPNSMKVLLRRPVATQSSGADGISSEDDXXXXXXXXGGERQWAVNVESGVYDEPIIKRWEDAKEQFKPVFRPSSPL----------------KTFRSLFGGAFDSEDD-------------EQQRARQHYATLGSE------GSDIITFETLRPSWNEVLHAWTLNFNGRVKIPSKKNFLVAPEK 708
            G M+FHT QD+HLR LKDI T+ DSA YLGCM+PN LGTEFR +D R  P  A         GK E+ AVVY++NV+GR       VPN  ++LLRRP  T             XXXXXXXX         V++G+  E   + W    ++    +R SS                  + F    GG  D++D                  A +H+ +  S        SDI+  ET RPSWN  L AW LNFNGRV+IPSKKNFL APE+
Sbjct:  166 GPMIFHTQQDSHLRMLKDITTAQDSASYLGCMVPNFLGTEFRLMDFRESPERA---------GKYEVCAVVYDVNVLGR-------VPNFFRLLLRRP-RTGXXXXXXXXXXXXXXXXXXXXXXXXGRGGGVDAGLALEQRARGWGQRPQRRLYQWRCSSRCLNTVILRRLATRLMHAQVFSDGSGGRCDTDDAFSIHRCSPARSLCHGAHALRHHDSSSSPIHQCSPASDIMVLETKRPSWNPALEAWVLNFNGRVRIPSKKNFLGAPER 419
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BLAST of mRNA_S-dermatodea_contig11389.897.1 vs. uniprot
Match: A0A6V1UG96_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UG96_HETAK)

HSP 1 Score: 139 bits (350), Expect = 2.360e-35
Identity = 92/237 (38.82%), Postives = 122/237 (51.48%), Query Frame = 1 
Query:    1 GMMLFHTLQDTHLRELKDIPTSSDSAVYLGCMIPNLLGTEFRQLDHRVDPR-DAAVMEEIKDKGKNELGAVVYELNVMGRRAQTAYWVPNSMKVLLRRPV-ATQSSGADGISSEDDXXXXXXXXGGERQWAVNVESGVYDEPIIKRWEDAKEQFKPVFRPSSPLKTFRSLFGGAFDSEDDEQQRARQHYATLGSEGSDIITFETLRPSWNEVLHAWTLNFNGRVKIPSKKNFLVAPE 705
            G  +FHTL+DTHLR +  IPT+ DSAVYLGC++P+LLGT F   +HR DP  D    +      +NEL  V YE NVMGR       VPN MKV++ RP  AT+++ A                G E+++             +K     K + + VF                 +S ++ Q   R++ A       D++ FET RP WNE + AWTLNFNGRVKIPSKKNF +  E
Sbjct:  173 GKFIFHTLRDTHLRPVDRIPTNQDSAVYLGCLVPSLLGTTFTLYNHRPDPHTDLQTKQGRAAAVENELAYVSYETNVMGR-------VPNFMKVVVPRPARATEAAAA--------------RRGLEQRYKTFRRQRQLGHLGMK----LKAEVEKVFN---------------IESNEEIQDFNREYTAVEQDNQQDLMIFETKRPVWNEQIQAWTLNFNGRVKIPSKKNFFIQAE 369
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BLAST of mRNA_S-dermatodea_contig11389.897.1 vs. uniprot
Match: K3X577_GLOUD (PDZ domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X577_GLOUD)

HSP 1 Score: 137 bits (345), Expect = 1.850e-33
Identity = 100/266 (37.59%), Postives = 127/266 (47.74%), Query Frame = 1 
Query:    1 GMMLFHTLQDTHLRELKDIPTSSDSAVYLGCMIPNLLGTEFRQLDHRVDPRDAAVMEEIKDKGKNELGAVVYELNVMGRRAQTAYWVPNSMK-VLLRRPVATQSSGADGISSEDDXXXXXXXXGGERQWAVNVESGVYDEP--IIKRWEDAKEQ--FKPVFR----PSSPLKTFRSLFGGAFDS----EDDEQQRARQHYATLGSEGS------------------DIITFETLRPSWNEVLHAWTLNFNGRVKIPSKKNFLVAPE 705
            G+ LFHTLQD+HLR+ KD+P + DSAVYLG M PN LGTEF  LDH+              K  NELG +VY  NVMGR       VPN +K V  R+P       AD                G    + NV + + D    I +R++  K+      V R        L+T     GG+ D+    EDD    AR          S                  D++TFET +P+WN+ L AWTLNF+GRVK+ SKKNFL+ PE
Sbjct:  459 GVFLFHTLQDSHLRDFKDLPQNEDSAVYLGQMAPNFLGTEFTVLDHQ-------------QKRCNELGFLVYSSNVMGR-------VPNFLKCVFPRQPPVIDGDEADANDDSTTASGAISSGMGSNSASFNVHNTMMDRNGNISERYKKLKQSRTLSIVERLRHFSLDDLETSLEYAGGSIDAIWHDEDDHDGCARSMRMKNSRSTSARDMLTPYGAVEQNDYQCDLLTFETKKPAWNDELGAWTLNFHGRVKLASKKNFLLVPE 704
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BLAST of mRNA_S-dermatodea_contig11389.897.1 vs. uniprot
Match: A0A8K1C842_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C842_PYTOL)

HSP 1 Score: 135 bits (339), Expect = 8.360e-33
Identity = 98/268 (36.57%), Postives = 126/268 (47.01%), Query Frame = 1 
Query:    1 GMMLFHTLQDTHLRELKDIPTSSDSAVYLGCMIPNLLGTEFRQLDHRVDPRDAAVMEEIKDKGKNELGAVVYELNVMGRRAQTAYWVPNSMKVLL---RRPVATQSSGADGISSEDDXXXXXXXXGGERQWAVNVESGVYDE--PIIKRWEDAKE--QFKPVFRPSS--------PLKTFRSLFGGAFDSEDDEQQRAR------------QH----YATLGSEG--SDIITFETLRPSWNEVLHAWTLNFNGRVKIPSKKNFLVAPE 705
            G+ +FHTLQD+HLR  +D+P S DSAVYLG M+PN LGTEF  LDH+              K +NE+G + Y  NV+GR       VPN +KV     R    T++    G  +            G      N  S + D    I  R++  K+  Q   V R  S           T  S F   +  +DD    AR            +H    Y  +  E    D++ FET +PSWNE L AWTLNFNGRVK+PSKKNFL+  E
Sbjct:  341 GVFVFHTLQDSHLRGFRDLPQSEDSAVYLGQMVPNFLGTEFTLLDHQ-------------QKRRNEIGFIEYSTNVLGR-------VPNFLKVAFPKQRTLEETENEDEQGSPTRPRAVTVGATGMGRNNAIFNTHSNMMDRNGTISDRYKRLKQTRQIPLVERLRSFSLDDIEVNFDTGGSKFRSGWHDDDDHAAHARAMRLKQLRSAAARHTSTPYGAVEQEDYDCDLLVFETRKPSWNEELGAWTLNFNGRVKLPSKKNFLIVAE 588
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BLAST of mRNA_S-dermatodea_contig11389.897.1 vs. uniprot
Match: A0A5D6XV38_9STRA (PDZ domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XV38_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.600e-32
Identity = 94/274 (34.31%), Postives = 134/274 (48.91%), Query Frame = 1 
Query:    1 GMMLFHTLQDTHLRELKDIPTSSDSAVYLGCMIPNLLGTEFRQLDHRVDPRDAAVMEEIKDKGKNELGAVVYELNVMGRRAQTAYWVPNSMKVLL-RRPVATQSSGADGISSEDDXXXXXXXX-----GGERQWAVNVESGVYDE--PIIKRWEDAKEQFKPVFRPSSPLKTFRSL------FGGAFDS----EDDEQQRARQHYATLGSEGS---------------------DIITFETLRPSWNEVLHAWTLNFNGRVKIPSKKNFLVAPE 705
            G  LFHTLQD+H R+ K +P S DSAVYLG M+PN LGTEF  LDH+              K +NELG +VY  NV+GR       VPN +K++  R+P A    G D   ++D               G     ++  S +  +   I +R+++ ++Q +          +F  L       GG  ++     DD + R R    + G++ S                     D++TFET +P+WN+ L AWTLNF+GRVK+ SKKNFL+ PE
Sbjct:  439 GPFLFHTLQDSHQRDFKSLPQSEDSAVYLGQMVPNFLGTEFTVLDHQ-------------QKRRNELGLLVYSSNVLGR-------VPNFLKIVFPRQPPAIDDEGEDNNINDDGGRDRASSAWSSSSAGSGSTPLSRRSTMTGQNGSIAERYKNVRQQRRVSLVERLRTFSFDELESSLEYTGGGDETTWRDSDDHESRPRSMNLSSGTQRSASAQSLSATPYGLVEQTDYQCDLLTFETKKPAWNDELGAWTLNFHGRVKLASKKNFLLVPE 692
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BLAST of mRNA_S-dermatodea_contig11389.897.1 vs. uniprot
Match: A0A1V9ZUF0_9STRA (ATP-binding Cassette (ABC) superfamily n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZUF0_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.820e-27
Identity = 88/241 (36.51%), Postives = 114/241 (47.30%), Query Frame = 1 
Query:    1 GMMLFHTLQDTHLRELKDIPTSSDSAVYLGCMIPNLLGTEFRQLDHRV-DPRDAAVMEEIKDKGKNELGAVVYELNVMGRRAQTAYWVPNSMKVLLRRPVATQSSGADGISSEDDXXXXXXXXGGERQWAVNVESGVYDEPIIKRWEDAKEQFKPVFRPSSPLKTFRS------LFGGAFDSEDDEQQRAR--QHYATLGSEGSDIITFETLRPSWNEVLHAWTLNFNGRVKIPSKKNFLV 696
            G  +FHTL+D+HLR  KD+P S DSAVYLG M+PN LGTEFR LDH    PR+ A +              VYE N+ GR       VPN++ V L R      S A  +++                            P+        E+ K + R  S L+  RS       F  A  S  +   RA   Q+ A    +  D+I   + +PSWNE +HAWTLNF+GRVK PSKKN L+
Sbjct:  208 GAFVFHTLRDSHLRRWKDLPRSEDSAVYLGQMVPNFLGTEFRVLDHATATPREVAFL--------------VYEANLFGR-------VPNALTVALGR-----DSHAGFVTTS---------------------------PLAP-----SERVKRLHRGPSVLERLRSWSQEVECFVEALTSPTNASLRATPVQYGAVEQEDHDDLIFLASKKPSWNEEIHAWTLNFDGRVKAPSKKNLLL 390
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BLAST of mRNA_S-dermatodea_contig11389.897.1 vs. uniprot
Match: A0A1V9YXY2_9STRA (ATP-binding Cassette (ABC) superfamily n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YXY2_9STRA)

HSP 1 Score: 117 bits (294), Expect = 5.670e-27
Identity = 80/244 (32.79%), Postives = 116/244 (47.54%), Query Frame = 1 
Query:    1 GMMLFHTLQDTHLRELKDIPTSSDSAVYLGCMIPNLLGTEFRQLDHRVDPRDAAVMEEIKDKGKNELGAVVYELNVMGRRAQTAYWVPNSMKVLLRRP--VATQSSGADGISSEDDXXXXXXXXGGE-------RQWAVNVESGVYDEPIIKRWEDAKEQFKPVFRPSSPLKTFRSLFGGAFDSEDDEQQRARQHYATLGSEGSDIITFETLRPSWNEVLHAWTLNFNGRVKIPSKKNFLVAPE 705
            G  LFHTLQD+H RE KD+P   D+A Y+G M+P  LGTEFR LDH                 ++E+G ++Y+ NV+GR       +PNS+ ++L R   +A +      IS                      R W+ ++ES V  + +         +  PV    +P K  ++   GA + +                E  D++ FET +PSW+E L+AWTLNF GRV   SKKNFL+  +
Sbjct:  239 GPFLFHTLQDSHHREWKDLPQQEDNAAYIGQMLPTFLGTEFRILDHNTAQ-------------EHEIGFLIYDTNVLGR-------IPNSLTLVLGREEDIAAKYFNRPSISERFKLRQSNRIYSPSATIFERIRSWSHDLESLV--DNLTSPTHSLATRKMPVTPTRAPEKLVKTTEYGALEQD----------------EHGDLLYFETKKPSWSEELNAWTLNFQGRVTSASKKNFLLCSQ 444
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BLAST of mRNA_S-dermatodea_contig11389.897.1 vs. uniprot
Match: T0QH97_SAPDV (Tub domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QH97_SAPDV)

HSP 1 Score: 115 bits (289), Expect = 1.710e-26
Identity = 79/234 (33.76%), Postives = 103/234 (44.02%), Query Frame = 1 
Query:    1 GMMLFHTLQDTHLRELKDIPTSSDSAVYLGCMIPNLLGTEFRQLDHRVDPRDAAVMEEIKDKGKNELGAVVYELNVMGRRAQTAYWVPNSMKVLLRR-PVATQSSGADGISSEDDXXXXXXXXGGERQWAVNVESGVYDEPIIKRWEDAKEQFKPVFRPSSPLKTFRSLFGGAFDSEDDEQQRARQHYATLGSEGSDIITFETLRPSWNEVLHAWTLNFNGRVKIPSKKNFLVA 699
            G  LFHTL+DTHLR  KD+P   D AVY+G ++ N LGTEFR LDH                 + ELG  VYE NV+GR        PNS+ + L R P     S                    ER      E    D  ++ R     E F          K     +      +DD                SD+  F+T +P+W+E +HAWTL+F+GRV +PSKKNFL++
Sbjct:  223 GPFLFHTLRDTHLRRWKDLPRGEDCAVYMGELVENFLGTEFRVLDH----------------ARRELGFFVYESNVLGR-------CPNSLTLALNREPHGPPPS--------------------ERYKKQQQER---DPSVLDRLRLEVESFVEALTSPRNSKQLSPAYDAVAQDDDD---------------ASDLALFQTTKPAWSEAIHAWTLHFDGRVHVPSKKNFLLS 395
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BLAST of mRNA_S-dermatodea_contig11389.897.1 vs. uniprot
Match: A0A3F2S1Q2_9STRA (PDZ domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S1Q2_9STRA)

HSP 1 Score: 116 bits (291), Expect = 2.970e-26
Identity = 86/271 (31.73%), Postives = 124/271 (45.76%), Query Frame = 1 
Query:    1 GMMLFHTLQDTHLRELKDIPTSSDSAVYLGCMIPNLLGTEFRQLDHRVDPRDAAVMEEIKDKGKNELGAVVYELNVMGRRAQTAYWVPNSMKVLLRRPVATQSSGADGISSEDDXXXXXXXXGGERQWAVNVESGVYDEPIIKRWEDA----------KEQFKPVFRP--SSPLKTFRSLFGGAFDS------EDDEQQRAR-----------QHYATLGSEG----------SDIITFETLRPSWNEVLHAWTLNFNGRVKIPSKKNFLV 696
            G  +FHTL+D+HLR ++++P S DSAVYLG + P+ LGTEF   DH               +  NEL  +VY  NV+GR       VPNS+K ++ +P        D    ++D         G+++  +  +  V++    +    A          + +  PV     S  L      FG A D       +DD + +AR              A++G              D++ FET +PSWNE L AWTLNF GRVK+ SKKNFL+
Sbjct:  362 GPFIFHTLRDSHLRTMRELPQSEDSAVYLGLLEPSFLGTEFTLFDHHTSS---------DQQYDNELAFLVYSANVLGR-------VPNSLKCVVSKPAQLDQVEDD----QEDVCQHKPITVGQQRSGMGSDGAVFNTHSTRSGPSASLSDRYNRLQQSRRVPVAERLRSFTLDDLDERFGVAADEALSWLDDDDVENQARAMRVREARMKGNRTASMGQIAYGAVEQNEYQKDLLVFETKQPSWNEELGAWTLNFQGRVKVASKKNFLL 612
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11389.897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G017_ECTSI3.090e-11673.47Tub domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CGA0_9STRA6.950e-3640.22Tubby C-terminal-like domain-containing protein (F... [more]
A0A6V1UG96_HETAK2.360e-3538.82Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K3X577_GLOUD1.850e-3337.59PDZ domain-containing protein n=1 Tax=Globisporang... [more]
A0A8K1C842_PYTOL8.360e-3336.57Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XV38_9STRA1.600e-3234.31PDZ domain-containing protein n=1 Tax=Pythium bras... [more]
A0A1V9ZUF0_9STRA1.820e-2736.51ATP-binding Cassette (ABC) superfamily n=1 Tax=Ach... [more]
A0A1V9YXY2_9STRA5.670e-2732.79ATP-binding Cassette (ABC) superfamily n=1 Tax=Thr... [more]
T0QH97_SAPDV1.710e-2633.76Tub domain-containing protein n=1 Tax=Saprolegnia ... [more]
A0A3F2S1Q2_9STRA2.970e-2631.73PDZ domain-containing protein n=4 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11389contigS-dermatodea_contig11389:943..7197 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score354.0
Seed ortholog evalue5.4e-95
Seed eggNOG ortholog2880.D7G017
KEGG koko:K19600
EggNOG free text desc.phosphatidylinositol binding
EggNOG OGsKOG2502@1,KOG2502@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons5
Model size708
Cds size705
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11389.897.1prot_S-dermatodea_contig11389.897.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11389 943..7194 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924200.7518396-CDS-S-dermatodea_contig11389:942..10741622924200.7518396-CDS-S-dermatodea_contig11389:942..1074Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11389 943..1074 -
1694079087.9865427-CDS-S-dermatodea_contig11389:942..10741694079087.9865427-CDS-S-dermatodea_contig11389:942..1074Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11389 943..1074 -
1622924200.7632957-CDS-S-dermatodea_contig11389:3022..31511622924200.7632957-CDS-S-dermatodea_contig11389:3022..3151Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11389 3023..3151 -
1694079087.9986413-CDS-S-dermatodea_contig11389:3022..31511694079087.9986413-CDS-S-dermatodea_contig11389:3022..3151Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11389 3023..3151 -
1622924200.771817-CDS-S-dermatodea_contig11389:4500..46901622924200.771817-CDS-S-dermatodea_contig11389:4500..4690Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11389 4501..4690 -
1694079088.0078754-CDS-S-dermatodea_contig11389:4500..46901694079088.0078754-CDS-S-dermatodea_contig11389:4500..4690Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11389 4501..4690 -
1622924200.7795718-CDS-S-dermatodea_contig11389:5437..56161622924200.7795718-CDS-S-dermatodea_contig11389:5437..5616Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11389 5438..5616 -
1694079088.0179334-CDS-S-dermatodea_contig11389:5437..56161694079088.0179334-CDS-S-dermatodea_contig11389:5437..5616Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11389 5438..5616 -
1622924200.787744-CDS-S-dermatodea_contig11389:7119..71941622924200.787744-CDS-S-dermatodea_contig11389:7119..7194Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11389 7120..7194 -
1694079088.0270562-CDS-S-dermatodea_contig11389:7119..71941694079088.0270562-CDS-S-dermatodea_contig11389:7119..7194Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11389 7120..7194 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924200.7992632-UTR-S-dermatodea_contig11389:7194..71971622924200.7992632-UTR-S-dermatodea_contig11389:7194..7197Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11389 7195..7197 -
1694079088.0364006-UTR-S-dermatodea_contig11389:7194..71971694079088.0364006-UTR-S-dermatodea_contig11389:7194..7197Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11389 7195..7197 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11389.897.1

>prot_S-dermatodea_contig11389.897.1 ID=prot_S-dermatodea_contig11389.897.1|Name=mRNA_S-dermatodea_contig11389.897.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=235bp
MMLFHTLQDTHLRELKDIPTSSDSAVYLGCMIPNLLGTEFRQLDHRVDPR
DAAVMEEIKDKGKNELGAVVYELNVMGRRAQTAYWVPNSMKVLLRRPVAT
QSSGADGISSEDDNDNDNDGSGGERQWAVNVESGVYDEPIIKRWEDAKEQ
FKPVFRPSSPLKTFRSLFGGAFDSEDDEQQRARQHYATLGSEGSDIITFE
TLRPSWNEVLHAWTLNFNGRVKIPSKKNFLVAPEK
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mRNA from alignment at S-dermatodea_contig11389:943..7197-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11389.897.1 ID=mRNA_S-dermatodea_contig11389.897.1|Name=mRNA_S-dermatodea_contig11389.897.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6255bp|location=Sequence derived from alignment at S-dermatodea_contig11389:943..7197- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTATGATGCTCTTCCACACCCTTCAGGACACGCATCTCCGAGAGCTGAA
GGACATCCCTACGTCGTCGGACAGCGCGGTGAGTGTCTGGCCACGGGTCG
GGTCGGATCGAGGTTAGCCGATCGGAGACAGCCATGAAAAACCAATCGAT
TGTATCGATCAATCAAACAATTGGCCAATCACTCAATCAACGAATCAATC
AATTTATTTGATTTTCCAATAAATCAATGAATTGATTAGATTGTTTGCGC
AGACTAAAAATTGCTTCCAAGTTTGATTATCTTCTTCTCCCGTTACCGAC
GGAAGGGCAACATTTATTACGATCCGGCTCAACTATCTGTACTTAGCAAC
ATTTGGAAGCAGAGATTCCTCAGTAATTTGCTGCAGGCTGGAGATCAGCT
GTGGTTGGTCAACAACCCCCCGAAACCCACCAAGCCGATCCAGGATTGGT
TGACACACCCCGAAGAGTGCGAACACGCATCACTCCATCGCACCCATCAC
AAACACCGCAAGAAGAGAAGGCAGAAGAGAAAGCTGCACGACGAGCAGTG
CCGATTGAGACTGTCGCATCTCTCGCGACGTTGCCTCTGGTTGTGGTAGA
CCTCCGACACGGGTTGCGGCGCTGGTGCTGCCGCACAGCTCCTGCTGTGC
TGTTGGTCTGCTGCATTGCCCCTTGGCCATAATTTTTGTCCCTGGAACAC
AGCTGTGCACTCTCGGAACTGTGCTCTTGAGGCAGCGTGTACCATGCAAT
CCCTGCAGCGGACCGCCGCTACGACTTGAGTGTCTGGTTGTGTTTCCGTG
CGCTGTCCGGTGGTTGTATCGTAGCTCGCGCGGGCAGCAGGGCGCGGCTG
GCGCCCGGCTGGTGGGTAGGTGTGTTGTTTTGTCCCTCCAAAAAACTTGT
TTGTTCCCAGGTGTACGGCACACATCAGTACAGAGTAGGACATCAAAACC
AATCCAGCACGCAACAGCAATAATTTTGTGTCTTACTATTCCGTTCCCGC
TGCGATACCCTGGCGGCACGTCTTGAGGGACGCGCGCGAGGCGTTGGTGC
TTGGCGCTCGCCCGTCGCGAGGCCTGCGGGGCTCACCCACCATGAGAGGC
CTCGCGCGTAGGCACCCACCAAAGACCACCGAGAAGAAAAGCAGATTTTC
GACCCACACCCATGGCAAAAAAGAAAAGACGTAGGGGTTTCTTGTTGGGG
GTCGCATTTTTGTTTCTCCGAGCAAAATTTCAATTTTGCTTTCGCGCAAC
TAAAATGCGCGCCATAATTTTTGTTTAGGTGCGGACCACACCGACTTTAG
TAAATTTGGGTCTGCGCGAATAGTCTAGTATTCAATCAAGCAACCAGTAA
ATCAACCAATCGATACATTGTACAATATCGATTTATGTAATCAATTAACC
AATTTATTAACAAATCAACCGACCAAGTAGTAAACCGATCAATATATCGA
TCGATTACCCAAGCAATCAATCATACCGGTATAAACCAATCAAACTAATA
TCAGGTAAATCAGCGCTTGGGCCGTGAAGTGCACTAAACATGGCTTTCCC
CTACATTTCCTATCCTCCCCTGTGCGAGCAGGTATACCTCGGGTGCATGA
TCCCGAACTTGCTAGGCACGGAGTTCCGTCAGCTGGACCACAGGGTGGAC
CCTCGCGATGCTGCCGTGATGGAGGAGATTAAGGACAAGGGGAAGAACGA
GCTCGGCGCCGTCGTGTACGAACTCAACGTTATGGGCAGGCGAGCGCAGA
CTGCCTACTGGTGGCGGCAGGCAGCTTTTTGTACATGCATTGGTTGCCTG
AGTGGCTATTTGTTTTTGGTTTGGGATAATTCGTCTTCGCCCATGTAAGC
CGATAGGGCTGTTTACCATAGCCCCAAAAGCAAAAGTGATTCCTAAAGAT
GTTGCACAGGTCACCAACAAGCACACCCACAGACGGCACCGGCTAACCGA
GCGGAAATAACAACCAGGCATATTCAGCAGCAGCAATGCATGGCGTCTGC
GTATCATAAGTCACTCAGGGGTCGTGACTCACGAAATTCCTTGCTGTTGA
CGCACCCGCTTTGCACACAATGTGCTGGATGTGCACGATTCGCGCGGGGG
GGGTGGGGTACTTATGTTAAATGCATGCCGTATCCAGCCGGACATAGACC
ACGCGTTCCAACAATGCCGGGACGGAGCGATATGCCGGGTTTTCGCGGGC
CAGGCTGCGTTTCATGAGGATGATACCAGCTGCTAGCCATGATTTTTGGG
GGTGAGGGAGCGTGGAGGGGGCGAAGGAGGCTTCTTACGGGCGAAGCGGC
AGGTCCTCGCGGAGTTTTGTCATTTTTCCCACCACGCGACGCCTCATGTG
CACGAGCTATGTAGCAGCTGGTGCTACTTCATCGGCGAGAACAAAGTGTA
AGTTACTTCATGGGTGCTACACTTTACTCCCCCCCCCCCCAAACACACAC
ACACACCTGACCCTCCTCGCCCCACCCCCCCCCCCCACTTCCGAACACGC
CGCGCAGGGTGCCGAACTCCATGAAGGTGTTGCTCAGAAGACCCGTAGCT
ACACAGTCGAGTGGTGCCGATGGGATATCTTCGGAGGACGACAACGACAA
CGACAACGATGGTTCTGGCGGGGAGCGGCAGTGGGCTGTTAACGTAGAGA
GCGGTGTGTACGATGAGCCCATCATCAAGCGCTGGGAAGACGCCAAGGTG
AAGACTCTAATGGTGCGGATAGGGGTCGTTTCGATGGTGGTGATGGTGAT
GGTGAAAGTATTAATACAATAGTGAGGGATATTCGCGTGACCGGCGATTG
CAAAACGTATGTTCTCTAGATCGGCGCCAAAACCGGTTGGCGGTAGAATC
GTGTGGGGAACAAGCGGTCACGTGACGTGTTGGTGGGTGTGATGGTGATT
GGGATTATCCCTTTTCGAACCTGTTAATGGCGGTGATGGTCATGGTCATG
GTCATGGTCATGGTCATTGTGCGACGGGTGCATGCAGAGATGCAGCGTGC
ATGCAAGCTAACCGCAACCAACGATTACTTTTTACCTTGACAATAGCTAT
ATAGTTTACCCTTTTGGTACTAGCCCCCTACACCGTTTGGACCGCCGGTT
AGCACGTAATGAGGCGTGCTTGAAGCGGGGCTCTGGGGATCCGCATGGCT
GTTGACGCAGGACTGAGAGAAAACGGAGCCCAAGGGGAAACGGGGATGAA
GCTTAAGCTTGTCAACTGGCATCTATTATAATAGAGAGATGTTGATCGCT
TCGGAGAGTTAACCCCAGTACTTAGTAGACTATCACGGAGGAATAGACCA
TAGTAAACAGGTCCAAATTCGTCACAAATCTTAAATATTTGCCCAGCAAA
ACAAACTATAATAGGCCGGCACGATTGGGTATTATATTATATTATATTAT
ATTATGTCGGTGTTTGTATCATAGGGTAGGCCAGCCCTAGTATAGTATGA
TGCTGTTTATTGGTTCGTGAGGTTTTGGAGTTGTTTGGGTATGGTGTTCA
TGGTCGGGACAGTTGGGTATTTATGGTCTTGAAATTTGGTCCTGATTACT
TTATTACTTGACTATAGTGTACCTCCGTCATAGTAACCCGTTTTGCGCGG
AATATAGTCACTGCGGGTGTGCTACATGTCGGTGAGGGTGCCGCACGCAC
GAGTGCACCCACCACGTGCATTCAATCTAGCTACTCGCGGCAGGCTCATC
ACTTTATCACTGGCACTGTGACATGTACGGCGAGGAAGAGCTACCGTTCG
GGTACTGTACACCGTTCGGGTACTATACCTGTTTCATGTGAATTACGGTG
CGGGGAGATGCCCCCGAAAACGGATTGAGTACAAACCCAACGCGTTAAGG
GGATGGTTGTGATGGTGATGATTGTTGTGATGGCAAAGCTTGTGATGATG
GTGATGATGGTTATGTTGGGTGGCTTTACAATAGGAATGAGGGTTGTGAT
GGTGCTGGTCGCGACGAGGAGAAATTAAAACAAACCGATGCATGCCCTAC
CCCCTCCCCCCCCGTCACCCTTTGGCTGGGGCCTTCTCCCTTACAGGAGC
AGTTCAAGCCTGTCTTTCGCCCATCATCGCCTTTGAAGACCTTCCGAAGC
TTGTTCGGGGGAGCGTTCGATTCAGAGGACGACGAGCAGCAGAGGGCTCG
CCAGCACTACGCCACCCTCGGCTCCGTGAGTGAAGAACACTGTTGAAATT
GAGAGTTGTGCCATGTGGTCGTTGTCCTTGCGTGGCGGCCGAGGACTGAC
GTCATGATGGCGGTGTGTGATGGTGGTGGAGGTAATGGTATATGATGATG
TTGATGAACATGGTGTTATGATGGTCGGTGGTGATGGTTATGGTGATGTT
GATGGTATGGAGCTCTATGACGATGTTGTCATACGTGGTGGGGATGCTGA
ATCATGGTCATGATTATTATGATGGTGTATACGGGGGGCCATAGTTAACG
GGTCCAAATTTGCCACAAGTCTCAACCTAAAATAATCAAAATCAGCTGGA
ATTATCGAGATTTCAAGGTCGGCGTTCTTGTGTATGGCCGAATCTCGTTT
TTTTTTTTTTTTTTTTTTTTTGGGTTTTTTTTTTTTTGGGAATTCTTGGC
TTTATTAGGGTGGTTTGGGTTTTTATTGTTCTGGTTTTTTGTTCTTGTTT
CTTTATTTNNNNNNNNNNTTTTTTTTTGTATAAATTTTGGGGTTTAGAGG
GGTAAAAATAATTAGAAATTATAAATTTTTCAAGTTCCGCATTCTAGAGT
AAGGAAGATTCGTTTTTTTTTTTTTTTTTTTTTTCATGGGATTTTTGTTG
TTTGGGAACTCATGGCATTAATAGGAGTAGTTGGGTATTTCATGGTCATG
ATATTTGGTCCTGATTACTTGATTTTAGTGTACCTCCTTAGTAGTGGTGA
TGGGGATGATGATGGCGAGGGCAGTCGCACAAGAGCGTGGCCGGCGCCTG
TCGAGTCTTGGGATACGAGCTCTGTTTATGTACGGGCATACCTTTACTGA
AAGACAACATCGTGATTGTCCTGAACATGATAGCGTTATCCTTGGGTCCG
GCACCCCTATAAAAGTGCAAATTCAAAAATATAAAGGGACTGTTGGGATT
AAACTTATTTTAAGGGGCGAAAATGGCCCAGGCATCACTATCAAGATTTG
CGTTGTGGACATATATATGATGCTTTCATTGTGGAAGTATTTGTGTAGGT
GATATAGTGGGTTGATAGTGTAGCTCCGCGATTGATTTGTTTTGCGACCC
AAGAAGTCCCTTTGCGGTCGTTGGGAGTGTGTGGCACTCTTTATTTCGCA
TGGAGAACAAAGTTCCTTTGCGGTACTTGGCGTATAGTCAGGCTTATCGA
ATGTGCAACGTTTGGCTACCTGGTATATCCAATCAATCCACGACATCTCC
GATTTTGGTGTCGCACATCCGAGGATGACGCCTAGCACTTGGTATCATCA
TTGTGAAACGCAGCCTGGACCGCGAAACCCCCACAAATAGCTCCGTCTCG
GCATTGTCGTCTGTTGGGATGCGTGGTCTATGTCCGTTTGGATGCGACAG
TTAAACGTTAAAAACTTGAGTGCGGCCCCCCTCTCGATGGGATCAATGCT
CCACCCTCCCGCGGACACGTGGCTACTGGCCTAAAAGGCTAGACATGCAA
GACCCCCCCCCCCCCCCCCTCCCACACCAAAACAAATAAAGATTTTTCGA
AATATAGAGCGAGCGTTGGGGTCCCACCTTTTCAAGAGGGAAGATGGTCC
AAGCTACACCTATGGAGGTTTTTACTTGTTACATATGATGCTATGGTGTC
TTATCGTGTACTAAGTATGATGTTATATGGTTATGGTATCATACATGAAA
TGAGTCTTTGTCCAGAGGTATATCCTGGTGATATATCTTTGCTGCGTTTT
TATGAGCCAATAATATTAGATGTTCATTTCCTACCATATACTTTTATTGT
ATATATTCTCTTGATTGAGCCTTTCTATACGCCCCCCCCCTCACCACCAC
CACCACCACCACCGTCAAAACCTATCCCCACCTAACCCTAACCCTCCTCC
CCTCCTCCCTCTCGGCGTTGTCAACTCCGTTTGAATGCGTGCGATCGTGT
TTTCGTGGCCCGTTTCTCTCCAGGAGGGAAGCGACATCATCACCTTTGAG
ACTCTCCGACCATCGTGGAACGAGGTGCTGCACGCGTGGACCCTGAACTT
CAACGGGCGGGTAAAGATTCCGTCAAAGAAAAACTTCCTCGTCGCGCCAG
AGAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11389:943..7197-

>mRNA_S-dermatodea_contig11389.897.1 ID=mRNA_S-dermatodea_contig11389.897.1|Name=mRNA_S-dermatodea_contig11389.897.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1410bp|location=Sequence derived from alignment at S-dermatodea_contig11389:943..7197- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGCTCTTCCACACCCTTCAGGACACGCATCTCCGAGAGCTGAAGGA
CATCCCTACGTCGTCGGACAGCGCGATGATGCTCTTCCACACCCTTCAGG
ACACGCATCTCCGAGAGCTGAAGGACATCCCTACGTCGTCGGACAGCGCG
GTATACCTCGGGTGCATGATCCCGAACTTGCTAGGCACGGAGTTCCGTCA
GCTGGACCACAGGGTGGACCCTCGCGATGCTGCCGTGATGGAGGAGATTA
AGGACAAGGGGAAGAACGAGCTCGGCGCCGTCGTGTACGAACTCAACGTT
ATGGGCAGGCGAGCGCAGACTGCCTACTGGTATACCTCGGGTGCATGATC
CCGAACTTGCTAGGCACGGAGTTCCGTCAGCTGGACCACAGGGTGGACCC
TCGCGATGCTGCCGTGATGGAGGAGATTAAGGACAAGGGGAAGAACGAGC
TCGGCGCCGTCGTGTACGAACTCAACGTTATGGGCAGGCGAGCGCAGACT
GCCTACTGGGTGCCGAACTCCATGAAGGTGTTGCTCAGAAGACCCGTAGC
TACACAGTCGAGTGGTGCCGATGGGATATCTTCGGAGGACGACAACGACA
ACGACAACGATGGTTCTGGCGGGGAGCGGCAGTGGGCTGTTAACGTAGAG
AGCGGTGTGTACGATGAGCCCATCATCAAGCGCTGGGAAGACGCCAAGGG
TGCCGAACTCCATGAAGGTGTTGCTCAGAAGACCCGTAGCTACACAGTCG
AGTGGTGCCGATGGGATATCTTCGGAGGACGACAACGACAACGACAACGA
TGGTTCTGGCGGGGAGCGGCAGTGGGCTGTTAACGTAGAGAGCGGTGTGT
ACGATGAGCCCATCATCAAGCGCTGGGAAGACGCCAAGGAGCAGTTCAAG
CCTGTCTTTCGCCCATCATCGCCTTTGAAGACCTTCCGAAGCTTGTTCGG
GGGAGCGTTCGATTCAGAGGACGACGAGCAGCAGAGGGCTCGCCAGCACT
ACGCCACCCTCGGCTCCGAGCAGTTCAAGCCTGTCTTTCGCCCATCATCG
CCTTTGAAGACCTTCCGAAGCTTGTTCGGGGGAGCGTTCGATTCAGAGGA
CGACGAGCAGCAGAGGGCTCGCCAGCACTACGCCACCCTCGGCTCCGAGG
GAAGCGACATCATCACCTTTGAGACTCTCCGACCATCGTGGAACGAGGTG
CTGCACGCGTGGACCCTGAACTTCAACGGGCGGGTAAAGATTCCGTCAAA
GAAAAACTTCCTCGTCGCGCCAGAGAAGGAGGGAAGCGACATCATCACCT
TTGAGACTCTCCGACCATCGTGGAACGAGGTGCTGCACGCGTGGACCCTG
AACTTCAACGGGCGGGTAAAGATTCCGTCAAAGAAAAACTTCCTCGTCGC
GCCAGAGAAG
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