mRNA_S-dermatodea_contig1138.892.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1138.892.1
Unique NamemRNA_S-dermatodea_contig1138.892.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1138.892.1 vs. uniprot
Match: D7FLJ6_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ6_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 5.190e-48
Identity = 94/154 (61.04%), Postives = 107/154 (69.48%), Query Frame = 1 
Query:    1 ASVLAASAGAVEYTVASCAELADVDDTVVTSLVITASPFACDSYTRFRVRNTMVLSSTEAEVVFSNFALKVLGELTVDPDVVFKDVVDQVKNGGALYVAAGATATFNGETLFENNSIFSKDLPDYE-------------YKIKKGGAIHNKARI 423
            AS+LAA A AVEYTVA+CA+LADVDDT VTSL I AS FACD YTRFRVRN M L +T   V F NF+LKVLGELTV+PDV+F  VVDQVKNGG L VA GATATF G + F +NS+  K +                 Y +KKGGAIHNK  +
Sbjct:   10 ASLLAAPAAAVEYTVATCADLADVDDTQVTSLTIDASTFACDEYTRFRVRNAMTLKATVPAVEFGNFSLKVLGELTVEPDVMFNGVVDQVKNGGVLSVAEGATATFMGTSEFSDNSVAVKQIGPVSCGDGCTRIGRGLSYIVKKGGAIHNKGTL 163
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BLAST of mRNA_S-dermatodea_contig1138.892.1 vs. uniprot
Match: D8LJ44_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ44_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 6.300e-46
Identity = 91/154 (59.09%), Postives = 104/154 (67.53%), Query Frame = 1 
Query:    1 ASVLAASAGAVEYTVASCAELADVDDTVVTSLVITASPFACDSYTRFRVRNTMVLSSTEAEVVFSNFALKVLGELTVDPDVVFKDVVDQVKNGGALYVAAGATATFNGETLFENNSIFSKDLP-------------DYEYKIKKGGAIHNKARI 423
            A +LAA A AVEYTVA+CA+LADVDDT VT L I  S FACD YTRF VRN+M L +T A V F NF+LKVLGELTV+PDV F  VVDQVKNGG L VA GAT+TF G + F +NS+  K L                 Y +KKGGAIHNK  +
Sbjct:   10 AGLLAAPAAAVEYTVATCADLADVDDTQVTGLTIDTSTFACDEYTRFPVRNSMTLKATVAAVEFGNFSLKVLGELTVEPDVTFNGVVDQVKNGGVLSVAEGATSTFMGTSEFSDNSVAVKQLGAVSCGDGCERTGRGLSYVVKKGGAIHNKGTL 163
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BLAST of mRNA_S-dermatodea_contig1138.892.1 vs. uniprot
Match: D7FQG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG2_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.320e-29
Identity = 61/93 (65.59%), Postives = 70/93 (75.27%), Query Frame = 1 
Query:    1 ASVLAASAGAVEYTVASCAELADVDDTVVTSLVITASPFACDSYTRFRVRNTMVLSSTEAEVVFSNFALKVLGELTVDPDVVFKDVVDQVKNG 279
            AS+LA  A AVEY V +CA+LADVDDT VT L I A+ FACD YTRFRVRN+M L +T + V F NF+LKVLGELTV+PDV F  VVDQ   G
Sbjct:   10 ASLLATPAAAVEYMVTTCADLADVDDTQVTGLTIDANTFACDEYTRFRVRNSMTLKATVSAVEFGNFSLKVLGELTVEPDVTFNGVVDQSSEG 102
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BLAST of mRNA_S-dermatodea_contig1138.892.1 vs. uniprot
Match: A0A6H5KTD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD4_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 5.410e-28
Identity = 63/129 (48.84%), Postives = 78/129 (60.47%), Query Frame = 1 
Query:   43 VASCAELADVDDTVVTSLVITASPFACDSYTRFRVRNTMVLSSTEAEVVFSNFALKVLGELTVDPDVVFKDVVDQVKNGGALYVAAGATATFNGETLFENNSIFSKDLPDY--EYKIKKGGAIHNKARI 423
            V SC E A +D  V T + IT + FACD YTR  +R+ MVL S+  +V FSNFALKV G LTV+PDVVF  V    KNGG L +  GA   F G   F +NSI S  + +   E  ++KGGAIH K  +
Sbjct:   26 VGSCTEFAAIDRKVETEVTITEADFACDEYTRLSIRSNMVLKSSVGKVTFSNFALKVYGSLTVEPDVVFTGVSLVEKNGGVLKLELGAVGVFKGTAEFSDNSIISTSIDESTEEEILRKGGAIHTKGSL 154
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1138.892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FLJ6_ECTSI5.190e-4861.04Asn/thr-rich large protein family protein n=1 Tax=... [more]
D8LJ44_ECTSI6.300e-4659.09Asn/thr-rich large protein family protein n=1 Tax=... [more]
D7FQG2_ECTSI1.320e-2965.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTD4_9PHAE5.410e-2848.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1138contigS-dermatodea_contig1138:5636..8571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size432
Cds size432
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924200.4593801-CDS-S-dermatodea_contig1138:5635..59021622924200.4593801-CDS-S-dermatodea_contig1138:5635..5902Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1138 5636..5902 +
1694079087.775711-CDS-S-dermatodea_contig1138:5635..59021694079087.775711-CDS-S-dermatodea_contig1138:5635..5902Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1138 5636..5902 +
1622924200.4685464-CDS-S-dermatodea_contig1138:8406..85711622924200.4685464-CDS-S-dermatodea_contig1138:8406..8571Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1138 8407..8571 +
1694079087.7852767-CDS-S-dermatodea_contig1138:8406..85711694079087.7852767-CDS-S-dermatodea_contig1138:8406..8571Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1138 8407..8571 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1138.892.1prot_S-dermatodea_contig1138.892.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1138 5636..8571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1138.892.1

>prot_S-dermatodea_contig1138.892.1 ID=prot_S-dermatodea_contig1138.892.1|Name=mRNA_S-dermatodea_contig1138.892.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=144bp
ASVLAASAGAVEYTVASCAELADVDDTVVTSLVITASPFACDSYTRFRVR
NTMVLSSTEAEVVFSNFALKVLGELTVDPDVVFKDVVDQVKNGGALYVAA
GATATFNGETLFENNSIFSKDLPDYEYKIKKGGAIHNKARIEH*
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mRNA from alignment at S-dermatodea_contig1138:5636..8571+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1138.892.1 ID=mRNA_S-dermatodea_contig1138.892.1|Name=mRNA_S-dermatodea_contig1138.892.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2936bp|location=Sequence derived from alignment at S-dermatodea_contig1138:5636..8571+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCTCGGTTCTAGCCGCCTCGGCCGGAGCCGTGGAGTATACCGTGGCCTC
CTGCGCGGAACTCGCCGACGTGGACGACACCGTCGTCACGTCGCTTGTCA
TCACCGCCAGCCCCTTCGCGTGTGACTCTTACACCCGGTTCCGGGTCCGA
AACACAATGGTGCTGAGCTCCACGGAGGCCGAGGTGGTGTTCTCTAACTT
CGCGCTCAAGGTGCTGGGGGAGCTGACGGTCGATCCCGACGTCGTTTTCA
AGGACGTCGTCGACCAGGTTTGTGCCGTCGTCTAAAAATGTTTGTTCGGG
TGCGACAGGCCGAAGAATCGTTATCCTTTGCCGACTTGTTCGCGCGGAAA
CCCACCGGAGGTTTTAAAAGCAACGGTCTAAGGGGGGAGAGGGGGGGGGG
GGTGGCTGCAGCGATCGCGCTTGGCTTTCAAGCAATCCTTGGGCAGGAGT
ATATTGTAGCAAAAATCTCCGCTATTGTGGTTTGTTTCAGCGAGGAGAAG
ATGCCATTTATTGTTATGGACACCCTCTTCCCTTCTGATTCTACCGCGCT
CTTGGGGGGCGGTTGCTACCGTTCGCCTGGTGTGCCGGTTTGCACGCGAA
GCACGGGGCTGCCGCCGGAGAGCGCTTTCGAGCACAAAGTGGAGCCGGTC
TATGCGCTATAATAGTAACCTCGGGTTACGGATCTGCTGTCTTGATGGGC
ACGCACACCATCAGGCGTCTGCGGTAGTTTTCACCTGCATGATACGGCTT
GACGATTTTCTCGCTGACTGCACAAACCAAAATGGAGTGTTCACCTGCAG
GACTGCAGGAGACGACAACTTTGACGGAGAACACCAAATTATTTCAGTTT
ATTTTGTTTGGCCTCCTGATGACGTTCAAGAAGACAAAAAAATGGAACGT
GGGCTACCGAGGCTGGGAATAGACGGACAGAAAAATGCAGGAGAACATTA
TGTACAGTTTTGTCGGGAGGGCGCGGGGGGGGGGGGGGGGGGGGGGGGGG
GGAAGGGAAAAAAATGGGATTTTTAATTTTGGGGGGGGAGGAGGAGGAAA
AGGGGGAAAAAAAAAAATATAAAAATTTTCGCTTTTTCCCCAAAGANNNN
NNNNNNGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGTGAGCAGGAAGGGAACAAATTGCGATATTTAACTTTCGGAGAGG
ATGCAGACGAAACGTGCGCAAAATCAAATGTTAACATATTCGCCGTTTTC
CTCCAGGCAGCCGGGATGCCAGGCCCTATCGCTGTTCAACGAGACTGCAA
GGTCCTCTTCAAAAGACAGTACGTTCGCCAAAAAATCGGCCAAAAATCAA
GTTGGTTTCAACAACGTTTAAATTAAATCGCCCGTGACTTGTCAGAAAGT
CAATAAATCGTTGAAAATACAATCCTAATCCAAGACTTCCCCCTCGGACT
ACCGATCGCCCAACTTTCGTAACCTGCTGTTTTGTTTCGGTGTCACTTGC
GCGGCCGCCACCCTCCGTTTCTACAAATTTGCATAGTATATTATGATATA
CAAGAAAGCACCCCCCCTCCATGCATAAAATACATTGCCAACGTTAACGG
TAGCTGGCCCCTCTCCCCCGCTTGAAGGTGCCCTTGGCTTCCTCTGCTTC
TCGCGCATGACCATAATATACCAGTACAGCATGAGACAGACCAAGCTCTG
TTTCGGCGCATTTGACCCCCCCCCCCCCGAGTACGTTTCCAGAGTATACC
ATGCTTCTGAGCGTGTGAGCAATGATGTCATGCGGACGTTGTACATTCCC
TACTTTTCAAGAAGCTGCCGAGGACTCTCTTGTTCGCTCAGCACGTAGTA
GGCTCTTCTCGTAGGTTTAATATTTTATGCCGTCTGCGGGCGAACTGCGA
GAGTGTGACGCATCTGTCTAAACGTAAATTATACCCCGGCTGCTATCAAG
CAGTATAATTCCCCTTGCGCTTCAGTACCGGGGTTTCTGCAGCGAGAACC
CCAATCAATAGACCAATAGTTTTCGTAGGGAGATTATGAGGCTTTCCTCA
AGCGGGATCGCCCCAAAACGCAGTTGGCGGGACTGGCCGCAAAAGGCAGC
ATATTCCGAAAGCGGCACAGCGCTTGCCTCAGGGGGACGCCATCTGATGT
CGCTGCGTAGGGGCGCACTAGAGATCCTGAGCATGGTTGGTGGGGAATCA
GCGGGGCTTGTCCCCGGAAGATTTCGCGGCTTGTCGCGTCGATGCTTCTG
GGGTTCTGCAGCGAGACCCCGAAAAATGCCGCTCTTGAGCCTTTAGCCGT
ATCCCTTATCGCAAACGCCTCCTTTTTCGCCGACACCCTCGGCCTGCAGA
GTGGCCCGCCTCGTGGGCACGGTTTGATGTCCTGTCTGCAACCTTCTTGC
CCACAAGGATCATCGTGCCTTCCAAATTTGTTTTGCTGAAGAACAAAAAA
GAAACAATTTTGCCCGCCGAACCAACGCCAAATGGGCCTCCTACCACTTG
AACGTGGTACATTACACGTATATGATTTCAGAAGTGTATATTCGCTTCGG
GGCTGCACCAATAGTGTATCAGAAATTTTAGCGCACAAATAGGAGGGTTT
CCATCAATTCCTGCCGACGTTTCTATGTACCTCTAGCTTAACCTTTCATC
CACCGAACCTGAATGTTCTTAACGCGGAAGCGCCCGTGAGACATTACAGC
GAGGATAGCTGTACTTAGCGTATTCCACTGACGCCCCCGCGACGCGCGAC
TGCCCGCCCGTCGCCATACAGGTGAAGAATGGAGGGGCGCTATACGTGGC
CGCCGGGGCCACGGCAACCTTCAACGGAGAGACCCTCTTCGAAAACAACA
GCATCTTCTCCAAGGACCTACCCGACTATGAGTACAAGATCAAGAAGGGC
GGGGCCATCCACAACAAGGCGCGTATCGAACACTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1138:5636..8571+

>mRNA_S-dermatodea_contig1138.892.1 ID=mRNA_S-dermatodea_contig1138.892.1|Name=mRNA_S-dermatodea_contig1138.892.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at S-dermatodea_contig1138:5636..8571+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCTCGGTTCTAGCCGCCTCGGCCGGAGCCGTGGAGTATACCGTGGCCTC
CTGCGCGGAACTCGCCGACGTGGACGACACCGTCGTCACGTCGCTTGTCA
TCACCGCCAGCCCCTTCGCGTGTGACTCTTACACCCGGTTCCGGGTCCGA
AACACAATGGTGCTGAGCTCCACGGAGGCCGAGGTGGTGTTCTCTAACTT
CGCGCTCAAGGTGCTGGGGGAGCTGACGGTCGATCCCGACGTCGTTTTCA
AGGACGTCGTCGACCAGGCCTCGGTTCTAGCCGCCTCGGCCGGAGCCGTG
GAGTATACCGTGGCCTCCTGCGCGGAACTCGCCGACGTGGACGACACCGT
CGTCACGTCGCTTGTCATCACCGCCAGCCCCTTCGCGTGTGACTCTTACA
CCCGGTTCCGGGTCCGAAACACAATGGTGCTGAGCTCCACGGAGGCCGAG
GTGGTGTTCTCTAACTTCGCGCTCAAGGTGCTGGGGGAGCTGACGGTCGA
TCCCGACGTCGTTTTCAAGGACGTCGTCGACCAGGTGAAGAATGGAGGGG
CGCTATACGTGGCCGCCGGGGCCACGGCAACCTTCAACGGAGAGACCCTC
TTCGAAAACAACAGCATCTTCTCCAAGGACCTACCCGACTATGAGTACAA
GATCAAGAAGGGCGGGGCCATCCACAACAAGGCGCGTATCGAACACTGAG
TGAAGAATGGAGGGGCGCTATACGTGGCCGCCGGGGCCACGGCAACCTTC
AACGGAGAGACCCTCTTCGAAAACAACAGCATCTTCTCCAAGGACCTACC
CGACTATGAGTACAAGATCAAGAAGGGCGGGGCCATCCACAACAAGGCGC
GTATCGAACACTGA
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