mRNA_S-dermatodea_contig11350.868.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11350.868.1
Unique NamemRNA_S-dermatodea_contig11350.868.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11350.868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11350contigS-dermatodea_contig11350:6211..7433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size273
Cds size270
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11350.868.1prot_S-dermatodea_contig11350.868.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11350 6214..7433 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924198.5994325-UTR-S-dermatodea_contig11350:6210..62131622924198.5994325-UTR-S-dermatodea_contig11350:6210..6213Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11350 6211..6213 +
1694079086.399921-UTR-S-dermatodea_contig11350:6210..62131694079086.399921-UTR-S-dermatodea_contig11350:6210..6213Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11350 6211..6213 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924198.6101456-CDS-S-dermatodea_contig11350:6213..62711622924198.6101456-CDS-S-dermatodea_contig11350:6213..6271Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11350 6214..6271 +
1694079086.407222-CDS-S-dermatodea_contig11350:6213..62711694079086.407222-CDS-S-dermatodea_contig11350:6213..6271Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11350 6214..6271 +
1622924198.6201136-CDS-S-dermatodea_contig11350:7221..74331622924198.6201136-CDS-S-dermatodea_contig11350:7221..7433Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11350 7222..7433 +
1694079086.414356-CDS-S-dermatodea_contig11350:7221..74331694079086.414356-CDS-S-dermatodea_contig11350:7221..7433Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11350 7222..7433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11350.868.1

>prot_S-dermatodea_contig11350.868.1 ID=prot_S-dermatodea_contig11350.868.1|Name=mRNA_S-dermatodea_contig11350.868.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=90bp
MGRYRACSLLLLALVAGIEANSNQEEGAGSSCGCSGGLNRDSGLAGIFPV
DDGESRGSDEAEAVRSAEAGDSEGDMVFVEAGTFRFGTDR
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mRNA from alignment at S-dermatodea_contig11350:6211..7433+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11350.868.1 ID=mRNA_S-dermatodea_contig11350.868.1|Name=mRNA_S-dermatodea_contig11350.868.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1223bp|location=Sequence derived from alignment at S-dermatodea_contig11350:6211..7433+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCATGGGGCGCTACCGGGCATGCTCGTTGCTGCTTCTCGCGCTCGTGGC
TGGAATTGAAGGTGACTGTGCATTGGTCTGTGTTCGTTCGCTTGGTGTAG
CAGGTGCGACCTGCTTGCCGGGAGTCCCTACAGGGTATCAAGATTTGGCA
CATACGAACGGCGAACCTGAACCAAATAGGAGTGTCACTTTTGACTTTTG
ACACGAGTATCATAGCGATCACACGATCACACTCTTGCTCTGCCGAGCTG
CACCTCCGTGTCGTGGTGCGAGGCCATCGCTGCTCAAATGGCACACACCG
CGTCGGCATGATAAAGAGCTTTCGAGGGTACGAGGGATGGATGCGGTCCT
ACTTCTCCGAAACGCAGACACGACGGACAAGGGGTGCTTTCAAATGCGTG
CCAAGACGTGCCATTGCATTGCGGCGGAATCAAACAAAGTACAAGTTCGA
CTTATGATGTTATTATAGTGGTTCCAGAGAGGCTACAACAGCAGTATCTA
CAGAGCATACAAAGTAGCCAGCTTTTGACCGACTAGGCAAACTGCTTTGT
CGTATGGCAGGATTCTATCGTACAAGTGCCTGTTTTAGGATGGCTAACGC
GGCCTAGATGCTCGCCGGGGCCTCTGATGAAACGTGAAAATGAACACGTT
TCAAACAACTGGCTGTATCCCCGGCACAGGTGCAAAGTATCATGTATCAG
CGTTGCGGAGAGAAAAGGATGAACCTATGGGACAAACAAACCCGCTCTTG
CACCCATACCTTTGCTGAGAGGAATCAAGGAAGAACCTTTAGATTTCCCC
TATCGTAGACCAAAAACAGTGTGCCTGTGAGTTAGGCATGTGCATGTGAA
CAAGCTTTTGGTTTTCATCATACGTAGGTATCGGCGTCGTCTGAGCCGTT
TTCTGAGCAAACCACCTTGTTGAACGCAAATGAACGTGGTATGATATCCC
CGCTCCTGTCCAGTAACCACCACAGGGTCTCCCGATGCTCGCGCTGTTTT
TGTTGTTTCAGCCAACAGCAACCAAGAGGAAGGCGCGGGCTCAAGTTGCG
GGTGCTCTGGCGGTCTGAACAGAGACTCTGGGCTCGCGGGAATTTTCCCC
GTCGATGATGGCGAGTCGCGCGGGTCAGACGAGGCCGAAGCCGTCAGAAG
CGCCGAAGCCGGGGACAGCGAGGGAGACATGGTGTTTGTCGAGGCGGGAA
CGTTTCGATTCGGCACGGACAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11350:6211..7433+

>mRNA_S-dermatodea_contig11350.868.1 ID=mRNA_S-dermatodea_contig11350.868.1|Name=mRNA_S-dermatodea_contig11350.868.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at S-dermatodea_contig11350:6211..7433+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGGCGCTACCGGGCATGCTCGTTGCTGCTTCTCGCGCTCGTGGCTGG
AATTGAAGATGGGGCGCTACCGGGCATGCTCGTTGCTGCTTCTCGCGCTC
GTGGCTGGAATTGAAGCCAACAGCAACCAAGAGGAAGGCGCGGGCTCAAG
TTGCGGGTGCTCTGGCGGTCTGAACAGAGACTCTGGGCTCGCGGGAATTT
TCCCCGTCGATGATGGCGAGTCGCGCGGGTCAGACGAGGCCGAAGCCGTC
AGAAGCGCCGAAGCCGGGGACAGCGAGGGAGACATGGTGTTTGTCGAGGC
GGGAACGTTTCGATTCGGCACGGACAGGCCAACAGCAACCAAGAGGAAGG
CGCGGGCTCAAGTTGCGGGTGCTCTGGCGGTCTGAACAGAGACTCTGGGC
TCGCGGGAATTTTCCCCGTCGATGATGGCGAGTCGCGCGGGTCAGACGAG
GCCGAAGCCGTCAGAAGCGCCGAAGCCGGGGACAGCGAGGGAGACATGGT
GTTTGTCGAGGCGGGAACGTTTCGATTCGGCACGGACAGG
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