mRNA_S-dermatodea_contig10121.86.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10121.86.1
Unique NamemRNA_S-dermatodea_contig10121.86.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10121.86.1 vs. uniprot
Match: A0A6H5JZW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW8_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 3.570e-8
Identity = 44/82 (53.66%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:  220 SRETEGQREGGRSASSS----PRGMLFPPTAAPGVAAAVGHVAAEGQEQGDPGA--ESEGVLQVRHLLRVRQAMLGGGDAGL 447
            SR+ +G   GG   SS+    PRGMLF P A  G A A      +   QG PG+  ESEG  QVRHLLRVRQAMLGGG+AG+
Sbjct: 2028 SRDAQGGHSGGGRWSSASRTLPRGMLFNPNAGAGAAGAADGRQQQHHPQG-PGSPEESEGEQQVRHLLRVRQAMLGGGNAGM 2108
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BLAST of mRNA_S-dermatodea_contig10121.86.1 vs. uniprot
Match: D7G7A4_ECTSI (Similar to chromodomain helicase DNA binding protein 4 isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A4_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 2.650e-6
Identity = 42/89 (47.19%), Postives = 51/89 (57.30%), Query Frame = 1 
Query:  220 SRETEGQREGGRSASSS----PRGMLFPPTAAPGVAAAVGHVAAEGQEQGDPGA---------ESEGVLQVRHLLRVRQAMLGGGDAGL 447
            SR+++G   GG   SS+    PRGMLF P A  G A       A+G++Q              ESEG  QVRHLLRVRQAMLGGG+AG+
Sbjct: 2019 SRDSQGGHSGGGRWSSASRTLPRGMLFNPNAETGAAGT-----ADGRQQXXXXXXXXXXXXXEESEGEQQVRHLLRVRQAMLGGGNAGM 2102
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10121.86.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZW8_9PHAE3.570e-853.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7A4_ECTSI2.650e-647.19Similar to chromodomain helicase DNA binding prote... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10121contigS-dermatodea_contig10121:4728..5178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size451
Cds size450
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924140.2151296-CDS-S-dermatodea_contig10121:4727..51771622924140.2151296-CDS-S-dermatodea_contig10121:4727..5177Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10121 4728..5177 +
1694079044.9619536-CDS-S-dermatodea_contig10121:4727..51771694079044.9619536-CDS-S-dermatodea_contig10121:4727..5177Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10121 4728..5177 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10121.86.1prot_S-dermatodea_contig10121.86.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10121 4728..5177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10121.86.1

>prot_S-dermatodea_contig10121.86.1 ID=prot_S-dermatodea_contig10121.86.1|Name=mRNA_S-dermatodea_contig10121.86.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=150bp
GEDRGWAEQGQQQPQASAGPSQQVPLVAAPQQTMQRRRSDSSQSFGSSFF
QPSSTGMASDAGGAAGTGAPPAASRETEGQREGGRSASSSPRGMLFPPTA
APGVAAAVGHVAAEGQEQGDPGAESEGVLQVRHLLRVRQAMLGGGDAGLA
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mRNA from alignment at S-dermatodea_contig10121:4728..5178+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10121.86.1 ID=mRNA_S-dermatodea_contig10121.86.1|Name=mRNA_S-dermatodea_contig10121.86.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=451bp|location=Sequence derived from alignment at S-dermatodea_contig10121:4728..5178+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGGAAGATCGCGGATGGGCGGAGCAAGGGCAGCAGCAACCGCAGGCGTC
TGCTGGGCCCTCACAACAGGTGCCGCTTGTGGCGGCCCCCCAACAGACAA
TGCAGCGTCGCCGCAGCGACAGCAGCCAGTCCTTCGGCTCTTCTTTCTTT
CAGCCCTCTTCCACGGGTATGGCGAGCGATGCCGGAGGCGCTGCCGGAAC
GGGGGCTCCGCCCGCGGCATCGCGAGAGACCGAAGGCCAGAGAGAGGGAG
GTCGATCGGCGTCCTCCTCTCCGAGGGGTATGCTGTTTCCGCCAACGGCT
GCGCCTGGAGTAGCGGCGGCGGTTGGGCACGTGGCTGCCGAAGGACAAGA
GCAAGGGGATCCCGGGGCGGAGAGCGAGGGCGTGCTGCAGGTGAGGCACT
TGTTGCGAGTGCGGCAGGCAATGTTGGGCGGAGGAGACGCGGGGTTGGCC
G
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Coding sequence (CDS) from alignment at S-dermatodea_contig10121:4728..5178+

>mRNA_S-dermatodea_contig10121.86.1 ID=mRNA_S-dermatodea_contig10121.86.1|Name=mRNA_S-dermatodea_contig10121.86.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at S-dermatodea_contig10121:4728..5178+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGGAAGATCGCGGATGGGCGGAGCAAGGGCAGCAGCAACCGCAGGCGTC
TGCTGGGCCCTCACAACAGGTGCCGCTTGTGGCGGCCCCCCAACAGACAA
TGCAGCGTCGCCGCAGCGACAGCAGCCAGTCCTTCGGCTCTTCTTTCTTT
CAGCCCTCTTCCACGGGTATGGCGAGCGATGCCGGAGGCGCTGCCGGAAC
GGGGGCTCCGCCCGCGGCATCGCGAGAGACCGAAGGCCAGAGAGAGGGAG
GTCGATCGGCGTCCTCCTCTCCGAGGGGTATGCTGTTTCCGCCAACGGCT
GCGCCTGGAGTAGCGGCGGCGGTTGGGCACGTGGCTGCCGAAGGACAAGA
GCAAGGGGATCCCGGGGCGGAGAGCGAGGGCGTGCTGCAGGTGAGGCACT
TGTTGCGAGTGCGGCAGGCAATGTTGGGCGGAGGAGACGCGGGGTTGGCC
GGGGAAGATCGCGGATGGGCGGAGCAAGGGCAGCAGCAACCGCAGGCGTC
TGCTGGGCCCTCACAACAGGTGCCGCTTGTGGCGGCCCCCCAACAGACAA
TGCAGCGTCGCCGCAGCGACAGCAGCCAGTCCTTCGGCTCTTCTTTCTTT
CAGCCCTCTTCCACGGGTATGGCGAGCGATGCCGGAGGCGCTGCCGGAAC
GGGGGCTCCGCCCGCGGCATCGCGAGAGACCGAAGGCCAGAGAGAGGGAG
GTCGATCGGCGTCCTCCTCTCCGAGGGGTATGCTGTTTCCGCCAACGGCT
GCGCCTGGAGTAGCGGCGGCGGTTGGGCACGTGGCTGCCGAAGGACAAGA
GCAAGGGGATCCCGGGGCGGAGAGCGAGGGCGTGCTGCAGGTGAGGCACT
TGTTGCGAGTGCGGCAGGCAATGTTGGGCGGAGGAGACGCGGGGTTGGCC
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