mRNA_S-dermatodea_contig10120.85.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10120.85.1
Unique NamemRNA_S-dermatodea_contig10120.85.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10120.85.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10120contigS-dermatodea_contig10120:7290..8227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionMethyltransferase type 11
Ec32 orthologEc-27_002790.2
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924140.1656828-CDS-S-dermatodea_contig10120:7289..73901622924140.1656828-CDS-S-dermatodea_contig10120:7289..7390Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10120 7290..7390 +
1694079044.9412143-CDS-S-dermatodea_contig10120:7289..73901694079044.9412143-CDS-S-dermatodea_contig10120:7289..7390Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10120 7290..7390 +
1622924140.181031-CDS-S-dermatodea_contig10120:8085..82271622924140.181031-CDS-S-dermatodea_contig10120:8085..8227Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10120 8086..8227 +
1694079044.9534798-CDS-S-dermatodea_contig10120:8085..82271694079044.9534798-CDS-S-dermatodea_contig10120:8085..8227Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10120 8086..8227 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10120.85.1prot_S-dermatodea_contig10120.85.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10120 7290..8227 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10120.85.1

>prot_S-dermatodea_contig10120.85.1 ID=prot_S-dermatodea_contig10120.85.1|Name=mRNA_S-dermatodea_contig10120.85.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=81bp
ALEDIIDPFYGDNVPRQHGGPWRLPFQNLQQRSSEAGSAADGDRPGPLFG
ELTENHFQNSQLLTSDELDGRMRSISVIATR
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mRNA from alignment at S-dermatodea_contig10120:7290..8227+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10120.85.1 ID=mRNA_S-dermatodea_contig10120.85.1|Name=mRNA_S-dermatodea_contig10120.85.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=938bp|location=Sequence derived from alignment at S-dermatodea_contig10120:7290..8227+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCCTGGAGGACATCATCGACCCCTTTTATGGCGACAATGTGCCGCGGCA
GCATGGGGGACCGTGGAGATTGCCGTTCCAGAACCTGCAGCAGCGCAGCA
GGTCGGTAAAACTCGTCGTGTTTGTTAGTTTTTGAATATCCTGCGGGGTA
AGTGTGATACTGCTTTTTTTGCTGGCGATCTGTTGGAACGGCTAGGTGGG
TAGCCACGGCTACGCCCGTGAGGTGTACGAACCGGCGAACCGGCGAACCG
GCGAAATATCAGATCCGAAAAAGCTTCAAGATACTACTGTTAATACTGTA
GTCTGTGAGCCCTATCGATTTGGTATCAAGAGCTCCCCTCTAAAAGCCCT
ATCGATTCGGCATCAAGGGTCCACTCTGAACTCTTGGAGCATTAAAACGT
ACAAAGCGCTATTGTTAGTTAATAAATATATGTTGTCACAGTGAGTGGCA
GGGAAACCCGCGGAGGCCATACATGTGAAAGGGTGTTCTCAAACCGGCGT
TGGGAGAGGATTCGTTGTCTTGGCGTCGTCTGAAAAGTAGGAAGCACATA
CCGTGGAAAAAAAGTAGGTATCGTAGGTAAAAGGGGCTCCATGTTTGTGA
CAAGGAGGTTTTTGCCGCTACAATAAATACACCTGACCACACATGAAAAT
GAGCTGTTTGTATGTAGGTGCCTGAAATTCCTTCAGTATGACACCGATGT
CTTAATGTTCTTTCTTCCCAATACATATACTTCGTATATATATATATATG
TGTCGATTCAACACGGCTGTCGTCCGATGATTGGCTCCGGAAGCAGCGAA
GCAGGCTCTGCTGCCGACGGGGATCGGCCTGGACCGTTGTTCGGGGAGCT
GACGGAGAACCACTTCCAAAACTCGCAGCTTTTGACCTCGGACGAGTTGG
ACGGGCGCATGCGCAGCATCAGCGTCATCGCTACAAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10120:7290..8227+

>mRNA_S-dermatodea_contig10120.85.1 ID=mRNA_S-dermatodea_contig10120.85.1|Name=mRNA_S-dermatodea_contig10120.85.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at S-dermatodea_contig10120:7290..8227+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCCTGGAGGACATCATCGACCCCTTTTATGGCGACAATGTGCCGCGGCA
GCATGGGGGACCGTGGAGATTGCCGTTCCAGAACCTGCAGCAGCGCAGCA
GGCCCTGGAGGACATCATCGACCCCTTTTATGGCGACAATGTGCCGCGGC
AGCATGGGGGACCGTGGAGATTGCCGTTCCAGAACCTGCAGCAGCGCAGC
AGCGAAGCAGGCTCTGCTGCCGACGGGGATCGGCCTGGACCGTTGTTCGG
GGAGCTGACGGAGAACCACTTCCAAAACTCGCAGCTTTTGACCTCGGACG
AGTTGGACGGGCGCATGCGCAGCATCAGCGTCATCGCTACAAGGCGAAGC
AGGCTCTGCTGCCGACGGGGATCGGCCTGGACCGTTGTTCGGGGAGCTGA
CGGAGAACCACTTCCAAAACTCGCAGCTTTTGACCTCGGACGAGTTGGAC
GGGCGCATGCGCAGCATCAGCGTCATCGCTACAAGG
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