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Homology
BLAST of mRNA_S-dermatodea_contig11306.844.1 vs. uniprot
Match: D7FJ45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ45_ECTSI) HSP 1 Score: 239 bits (611), Expect = 3.930e-77 Identity = 130/204 (63.73%), Postives = 160/204 (78.43%), Query Frame = 1
Query: 1 MVVGAGTADGGDGEGGGPIDAEKQLLDAELTEAEYTLAGEVQQIESLAQENFDKVETLRDLEADVKALEQRNQCHVSMLREEQTSAQQELTHRLSVLHEQLAHLDLKHERYREASRVSDEAGAEVQALLAKMERRTKTHAEEVPAKKKEMLHLAQGLESTFRTTLKDLEGTYRRKAFDALGSEAKVGMRANKFLHEEMTLQEVG 612
M VG G + GDGE GGP+DAE QLL+ EL EAE+TL GEVQQIE LAQEN +K+E LR L+ DV L+++N+ H+SML++E S QQEL+H+++VL EQ L LKHERY+ A+R+++E AEV+ALL KME+RTKTH EEV A ++E+LHL Q LESTFR TLKDL GTYRRKAF+AL SE K MRANK L EEM LQE+G
Sbjct: 1 MAVGGGATESGDGEAGGPVDAESQLLETELNEAEFTLLGEVQQIEHLAQENSNKLEELRGLKEDVNTLQEKNEYHISMLQDEHASVQQELSHKMAVLREQATQLGLKHERYKTAARLNEEISAEVEALLRKMEQRTKTHGEEVHAIRQEVLHLRQQLESTFRKTLKDLGGTYRRKAFEALASEEKTDMRANKLLREEMALQELG 204
BLAST of mRNA_S-dermatodea_contig11306.844.1 vs. uniprot
Match: A0A6H5K8C5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8C5_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 1.310e-23 Identity = 55/86 (63.95%), Postives = 67/86 (77.91%), Query Frame = 1
Query: 280 LSVLHEQLAHLDLKHERYREASRVSDEAGAEVQALLAKMERRTKTHAEEVPAKKKEMLHLAQGLESTFRTTLKDLEGTYRRKAFDA 537
++VL EQ L LKHERY+ A+R+++E AEV ALL KME+RTKTH EEV A ++E+LHL Q LESTFR TLKDL GTYRRK +A
Sbjct: 1 MAVLREQATQLGLKHERYKTATRLNEEISAEVDALLRKMEQRTKTHGEEVHAIRQEVLHLRQQLESTFRKTLKDLGGTYRRKVTNA 86
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 244.6 |
| Seed ortholog evalue | 4.1e-62 |
| Seed eggNOG ortholog | 2880.D7FJ45 |
| EggNOG OGs | 2D44P@1,2STVI@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-10_000080.1 |
| Exons | 5 |
| Model size | 627 |
| Cds size | 627 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11306.844.1 >prot_S-dermatodea_contig11306.844.1 ID=prot_S-dermatodea_contig11306.844.1|Name=mRNA_S-dermatodea_contig11306.844.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=209bp
MVVGAGTADGGDGEGGGPIDAEKQLLDAELTEAEYTLAGEVQQIESLAQE
NFDKVETLRDLEADVKALEQRNQCHVSMLREEQTSAQQELTHRLSVLHEQ
LAHLDLKHERYREASRVSDEAGAEVQALLAKMERRTKTHAEEVPAKKKEM
LHLAQGLESTFRTTLKDLEGTYRRKAFDALGSEAKVGMRANKFLHEEMTL
QEVGERKR* back to topmRNA from alignment at S-dermatodea_contig11306:258..3012+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig11306.844.1 ID=mRNA_S-dermatodea_contig11306.844.1|Name=mRNA_S-dermatodea_contig11306.844.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2755bp|location=Sequence derived from alignment at S-dermatodea_contig11306:258..3012+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGGTTGGAGCCGGTACCGCTGATGGGGGGGATGGAGAAGGTGGAGG
ACCTATCGATGCTGAGAAGCAGCTGCTGGATGCAGAATTGACCGAAGCAG
AGTACACCCTTGCCGGTGAGGTCCAGCAGATCGAGAGCCTCGCTCAAGAA
AATTTCGACAAAGTGAGCAGCGGCGGGATCCGCATTGAAATACAGTCAGT
ATCATATATTCTTCAGACCTGTTATCATACGTATTGCGGCTTGGGTTCAG
ATTATTTTGAGTGCGAGACCCCCAAGACCCAACAACAGCTAGCTGTAGTA
CGAGTAGTCCGTCAAGTAATCTTGAACCTAAGCTTGTGCATGGCTTTGAG
GCGGCGGCGAAGATATGGTGCGTTAAAGTGAGAATGGCAACGTGGGCACG
TGTCTAGGGCACGTTGACAGAAAAATATAACACCCAACAGCGTCCGGTTG
CATACAAGCCCACAGCCTTGCCATCTGAGCACCATACGCTCGGCGTTGTT
ATGCTGCACGGTGACGTATGAAGGTTGAGACACTGCGCGACCTGGAAGCG
GACGTGAAAGCGTTAGAACAACGGAACCAGTGCCATGTCTCCATGCTACG
CGAGGAGCAGACGTGAGTCTTGGACCAAAATTATGCTGTCAGTGTTCATG
AGCACGAATACAAGTATGCGCCACCTACGTAGTACTGATGTGTAAGCGAC
AACCATCATGTCTCGAACGTTGCGAAGTCGGCAACCCTGAAGCAACGTCA
TGCAATATCCACCATAATAACATAAAAAAAACAAAACAGAACAGAACACA
GAAAGTGCACAAGTACAAGTAACGACGGGCTGATTTTGTTAATATATCTC
CACGCCTAGAGCAGAGAGTAACCGAGTATCGGGCAACAGGAACGGCGAGC
GGAATTTTTGTTCCCTGCTAGGGTAAGCACCGAGCAGTCTACTCGCGCCC
ATATAGCATCATCCGCAGATATGCACGCAGAATGCTCGAACAGTCAGTAC
ATAGTAATTAATAGTAATAGCCGATACCAATAATGTTTCTTTCGAAGTGT
ACCTGTAGCATAATAATTTGTTATTGCTTTGCGCCCACCAACACAACAGC
AGCAGCAATGAGGAAGATACTAAAAAATGGTGCCCTGTCTTGTGTGTGTA
GGTCGATGATACCCAATTTTATACCTTTGTATACAAGCAAACGCGGATAG
TCTGCACGGGCTTGGGTTCTTGTGGATCTCCACGCCACAACCATACGCCG
GACGTATCTCAAGTAGATGGGCAAGACGTGGGCCACAAAAGCCCGCTGGC
CGCTTTGGAGACGATATAGTATTTAGCTCGATGACAAACAAGAATAGAGG
TGACTTCCACCGCCGATCCTTAATGGCTCTCGGAGGCATTTTCCGTGTCG
ATATGCTATTATTTACGAGCCACGAGTTTCGCGAGGATCGACAAGAACGC
AAGACCTCAGCGACGGGCAGGCGCGTGTGAGGAAGAGCTGAGCCGATCCT
TCCCAGACAGCCAACGCTGTGCGCTCTAGAGAGTGGGCTACACAGCCTCC
AGTAACCGTCTGGCGAATATTACAAATGCACCGGTGATATCCCAAACCTT
TACAGGTCGGCCCAACAAGAGCTGACGCATCGACTGTCGGTACTCCACGA
ACAACTCGCGCATCTAGACCTAAAGCATGAGCGGTATAGAGAGGCATCGC
GCGTTAGCGATGAAGCAGGGGCAGAGGTGCAAGCGTTGCTGGCGAAGATG
GAGCGAAGAACGAAGGTGACGCAAAAATATTGGCTGATCATATTCAAGGA
AGCGTTCGACCGATTGCCGCTTAGGCTTGGAACTTTCACCTCAAAACCTC
TTGCACCCTTCCTGCTTGACGTGCTCGTGTACCTAGCGGTGCGTCTTCTA
GACGGCGCTTTGGACATAAAATAGCTCTGCTGTGAGCCCTGTAGACGCGG
TCATGACACCCCCCCCCCCCCCCTTAGAGAGCAAGTCGTCCGTGGGCACA
TTCGAATTGTTGGCTTTGGCATGTGAAGATTAGCACACGCTTTAGTCTCG
CCAATGACCAAGTTTGGCTTATCGTACAATTTGACGTTCCCGACGACCGC
GTTACAGACACACGCGGAGGAGGTTCCCGCAAAAAAAAAGGAAATGCTGC
ACTTGGCGCAGGGGCTAGAGTCCACCTTTCGGACGACATTAAAAGATCTG
GAGGGGACCTATCGCCGCAAGGTGCGGAACACGTGTCACCCCAGGGTGCC
GTTCCCATGCTTGCGCAACCCGCCGGTATCAGTCAGAGCTTGTTCAGCTT
AGCCTTGGCGCCGATGGGAGACTACTGCATTGGTTCTTTTACCGCAGCAA
GGGAGTTTTCCGTCGTCGCTTTCCCATGATTATGAAGAAGCAACGGGATA
TGAACACGACTTTGTGATGGTAGGGGCAGGTGGGAGTTGGAAGCTTCGAG
CAATTTGTTGGTAACGGGCCGCCACGCGAGCGTTTCCACTGGTCGATTCG
GGATAAGGCGATGGCTTCGATCTGTTCCCGACTCAGCCGAGGCAAAAATA
TTCCCCTGCGTCGCCAACTACGAGCCATGTAGCAGATCACGGACCACTCA
CACCAGGAGCTCCCTCGCACGTTGCCTGTATTGATGACAAACTCCGGGTG
CAGGCGTTTGATGCCCTGGGAAGCGAAGCAAAGGTTGGGATGCGGGCCAA
CAAGTTTCTTCACGAGGAGATGACGTTGCAGGAAGTAGGTGAGCGCAAAC
GTTAA back to topCoding sequence (CDS) from alignment at S-dermatodea_contig11306:258..3012+ >mRNA_S-dermatodea_contig11306.844.1 ID=mRNA_S-dermatodea_contig11306.844.1|Name=mRNA_S-dermatodea_contig11306.844.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1254bp|location=Sequence derived from alignment at S-dermatodea_contig11306:258..3012+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGGTTGGAGCCGGTACCGCTGATGGGGGGGATGGAGAAGGTGGAGG
ACCTATCGATGCTGAGAAGCAGCTGCTGGATGCAGAATTGACCGAAGCAG
AGTACACCCTTGCCGGTGAGGTCCAGCAGATCGAGAGCCTCGCTCAAGAA
AATTTCGACAAAATGGTGGTTGGAGCCGGTACCGCTGATGGGGGGGATGG
AGAAGGTGGAGGACCTATCGATGCTGAGAAGCAGCTGCTGGATGCAGAAT
TGACCGAAGCAGAGTACACCCTTGCCGGTGAGGTCCAGCAGATCGAGAGC
CTCGCTCAAGAAAATTTCGACAAAGTTGAGACACTGCGCGACCTGGAAGC
GGACGTGAAAGCGTTAGAACAACGGAACCAGTGCCATGTCTCCATGCTAC
GCGAGGAGCAGACGTTGAGACACTGCGCGACCTGGAAGCGGACGTGAAAG
CGTTAGAACAACGGAACCAGTGCCATGTCTCCATGCTACGCGAGGAGCAG
ACGTCGGCCCAACAAGAGCTGACGCATCGACTGTCGGTACTCCACGAACA
ACTCGCGCATCTAGACCTAAAGCATGAGCGGTATAGAGAGGCATCGCGCG
TTAGCGATGAAGCAGGGGCAGAGGTGCAAGCGTTGCTGGCGAAGATGGAG
CGAAGAACGAAGGTCGGCCCAACAAGAGCTGACGCATCGACTGTCGGTAC
TCCACGAACAACTCGCGCATCTAGACCTAAAGCATGAGCGGTATAGAGAG
GCATCGCGCGTTAGCGATGAAGCAGGGGCAGAGGTGCAAGCGTTGCTGGC
GAAGATGGAGCGAAGAACGAAGACACACGCGGAGGAGGTTCCCGCAAAAA
AAAAGGAAATGCTGCACTTGGCGCAGGGGCTAGAGTCCACCTTTCGGACG
ACATTAAAAGATCTGGAGGGGACCTATCGCCGCAAGACACACGCGGAGGA
GGTTCCCGCAAAAAAAAAGGAAATGCTGCACTTGGCGCAGGGGCTAGAGT
CCACCTTTCGGACGACATTAAAAGATCTGGAGGGGACCTATCGCCGCAAG
GCGTTTGATGCCCTGGGAAGCGAAGCAAAGGTTGGGATGCGGGCCAACAA
GTTTCTTCACGAGGAGATGACGTTGCAGGAAGTAGGTGAGCGCAAACGTT
AAGCGTTTGATGCCCTGGGAAGCGAAGCAAAGGTTGGGATGCGGGCCAAC
AAGTTTCTTCACGAGGAGATGACGTTGCAGGAAGTAGGTGAGCGCAAACG
TTAA back to top
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