mRNA_S-dermatodea_contig11293.828.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11293.828.1
Unique NamemRNA_S-dermatodea_contig11293.828.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11293.828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11293contigS-dermatodea_contig11293:4929..5487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size559
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11293.828.1prot_S-dermatodea_contig11293.828.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11293 5040..5420 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924195.4514782-UTR-S-dermatodea_contig11293:4928..50391622924195.4514782-UTR-S-dermatodea_contig11293:4928..5039Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11293 4929..5039 +
1694079084.1229696-UTR-S-dermatodea_contig11293:4928..50391694079084.1229696-UTR-S-dermatodea_contig11293:4928..5039Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11293 4929..5039 +
1622924195.4755464-UTR-S-dermatodea_contig11293:5420..54871622924195.4755464-UTR-S-dermatodea_contig11293:5420..5487Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11293 5421..5487 +
1694079084.145524-UTR-S-dermatodea_contig11293:5420..54871694079084.145524-UTR-S-dermatodea_contig11293:5420..5487Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11293 5421..5487 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924195.4668174-CDS-S-dermatodea_contig11293:5039..54201622924195.4668174-CDS-S-dermatodea_contig11293:5039..5420Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11293 5040..5420 +
1694079084.1364377-CDS-S-dermatodea_contig11293:5039..54201694079084.1364377-CDS-S-dermatodea_contig11293:5039..5420Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11293 5040..5420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11293.828.1

>prot_S-dermatodea_contig11293.828.1 ID=prot_S-dermatodea_contig11293.828.1|Name=mRNA_S-dermatodea_contig11293.828.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=127bp
MVQNTWFVSNLNITSVSGIECRFFRQEIAPTNTGSKLWLYRGGGDGWVFA
LRAPPCVQSQAWQGYGCHPSLSYSRYALLLQFVAAAVVECEVQRGQKYDP
CCYSRCRRCCWMRSTYSARAGIIDDP*
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mRNA from alignment at S-dermatodea_contig11293:4929..5487+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11293.828.1 ID=mRNA_S-dermatodea_contig11293.828.1|Name=mRNA_S-dermatodea_contig11293.828.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=559bp|location=Sequence derived from alignment at S-dermatodea_contig11293:4929..5487+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCGTCGGCACCCCCTTTGCGCTTGCGTGGTGTGTGTGTGTGTGTTTTTT
TTTGTTTTTTTTTTTGACGATCGTTGGGGCGTTGCACGGCAAATGTATTA
CATGTATACATATGGTACAGAACACATGGTTTGTATCGAACCTAAATATT
ACTAGCGTTTCGGGAATTGAGTGCCGTTTTTTTCGTCAGGAAATCGCCCC
AACCAATACGGGTAGCAAATTATGGCTCTATCGCGGCGGCGGGGACGGGT
GGGTATTCGCACTAAGGGCACCGCCGTGCGTCCAAAGCCAAGCTTGGCAA
GGTTACGGTTGCCATCCATCCCTCTCCTACAGCCGCTATGCACTGCTGTT
ACAGTTTGTTGCCGCTGCTGTGGTTGAATGCGAAGTACAGCGCGGGCAGA
AATATGACCCCTGCTGTTACAGTCGTTGTCGCCGCTGTTGTTGGATGCGA
AGTACATACAGCGCGCGGGCAGGTATCATAGATGACCCCTGAAAATTCAC
CACTCAATTCCAAAAGAGATTCTCCCGGCCCCTGCTTTTCGCTGCCGGGG
GGCGGGCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11293:4929..5487+

>mRNA_S-dermatodea_contig11293.828.1 ID=mRNA_S-dermatodea_contig11293.828.1|Name=mRNA_S-dermatodea_contig11293.828.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at S-dermatodea_contig11293:4929..5487+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTACAGAACACATGGTTTGTATCGAACCTAAATATTACTAGCGTTTC
GGGAATTGAGTGCCGTTTTTTTCGTCAGGAAATCGCCCCAACCAATACGG
GTAGCAAATTATGGCTCTATCGCGGCGGCGGGGACGGGTGGGTATTCGCA
CTAAGGGCACCGCCGTGCGTCCAAAGCCAAGCTTGGCAAGGTTACGGTTG
CCATCCATCCCTCTCCTACAGCCGCTATGCACTGCTGTTACAGTTTGTTG
CCGCTGCTGTGGTTGAATGCGAAGTACAGCGCGGGCAGAAATATGACCCC
TGCTGTTACAGTCGTTGTCGCCGCTGTTGTTGGATGCGAAGTACATACAG
CGCGCGGGCAGGTATCATAGATGACCCCTGAATGGTACAGAACACATGGT
TTGTATCGAACCTAAATATTACTAGCGTTTCGGGAATTGAGTGCCGTTTT
TTTCGTCAGGAAATCGCCCCAACCAATACGGGTAGCAAATTATGGCTCTA
TCGCGGCGGCGGGGACGGGTGGGTATTCGCACTAAGGGCACCGCCGTGCG
TCCAAAGCCAAGCTTGGCAAGGTTACGGTTGCCATCCATCCCTCTCCTAC
AGCCGCTATGCACTGCTGTTACAGTTTGTTGCCGCTGCTGTGGTTGAATG
CGAAGTACAGCGCGGGCAGAAATATGACCCCTGCTGTTACAGTCGTTGTC
GCCGCTGTTGTTGGATGCGAAGTACATACAGCGCGCGGGCAGGTATCATA
GATGACCCCTGA
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