mRNA_S-dermatodea_contig11283.818.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11283.818.1
Unique NamemRNA_S-dermatodea_contig11283.818.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11283.818.1 vs. uniprot
Match: D7FVA7_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA7_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 2.120e-47
Identity = 75/86 (87.21%), Postives = 81/86 (94.19%), Query Frame = 2
Query:    2 GWLNGFGEE-GVKFDSSRDRGRPFSFKVGTGMVIKAWDEALLDMQIGERRQITVPPQLGYGKRGAGGIIPPDSTLYFDVELLAVQP 256
            GWLN FG+E G KFDSSRDRGRPFSFKVGTG VIKAWDEA+LDM+IGERRQITVPPQLGYG RGAGG+IPP++TLYFDVELLAVQP
Sbjct:  133 GWLNAFGDEDGAKFDSSRDRGRPFSFKVGTGQVIKAWDEAMLDMRIGERRQITVPPQLGYGSRGAGGVIPPNATLYFDVELLAVQP 218          
BLAST of mRNA_S-dermatodea_contig11283.818.1 vs. uniprot
Match: A0A835ZFS8_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFS8_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.480e-37
Identity = 62/85 (72.94%), Postives = 72/85 (84.71%), Query Frame = 2
Query:    2 GWLNGFGEE--GVKFDSSRDRGRPFSFKVGTGMVIKAWDEALLDMQIGERRQITVPPQLGYGKRGAGGIIPPDSTLYFDVELLAV 250
            GWL GFG+E   VKFDSSRDRGRPF+FK G G VIKAWDE++L M++GERR I VPP LGYGKRGAGG+IP ++TLYFDVELL +
Sbjct:  109 GWLGGFGDEDASVKFDSSRDRGRPFTFKAGVGQVIKAWDESVLAMKVGERRLIIVPPDLGYGKRGAGGVIPANATLYFDVELLGI 193          
BLAST of mRNA_S-dermatodea_contig11283.818.1 vs. uniprot
Match: K9U471_CHRTP (Peptidyl-prolyl cis-trans isomerase n=4 Tax=Chroococcidiopsis TaxID=54298 RepID=K9U471_CHRTP)

HSP 1 Score: 128 bits (322), Expect = 1.970e-35
Identity = 58/77 (75.32%), Postives = 67/77 (87.01%), Query Frame = 2
Query:   23 EEGVKFDSSRDRGRPFSFKVGTGMVIKAWDEALLDMQIGERRQITVPPQLGYGKRGAGGIIPPDSTLYFDVELLAVQ 253
            E+G KFDSSRDRG+PFSFKVGTG VIK WDEAL  M++GERRQI +PP+LGYG RGAGG+IPP++TL FDVELL V 
Sbjct:  106 EDGSKFDSSRDRGQPFSFKVGTGQVIKGWDEALSTMKVGERRQIVIPPELGYGARGAGGVIPPNATLIFDVELLKVN 182          
BLAST of mRNA_S-dermatodea_contig11283.818.1 vs. uniprot
Match: A0A7S3PZM0_9STRA (Peptidylprolyl isomerase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZM0_9STRA)

HSP 1 Score: 127 bits (320), Expect = 6.690e-35
Identity = 58/82 (70.73%), Postives = 69/82 (84.15%), Query Frame = 2
Query:    2 GWLNGFGEEGVKFDSSRDRGRPFSFKVGTGMVIKAWDEALLDMQIGERRQITVPPQLGYGKRGAGGIIPPDSTLYFDVELLA 247
            GWL+GF  E  KFDSSRDRGRPFSFKVG G VI+ WDE+ LDM++GERR + +PP+LGYG RGAGG+IP  +TLYFDVELL+
Sbjct:  120 GWLDGFQSE-KKFDSSRDRGRPFSFKVGAGQVIRGWDESFLDMKVGERRNVIIPPRLGYGDRGAGGLIPGGATLYFDVELLS 200          
BLAST of mRNA_S-dermatodea_contig11283.818.1 vs. uniprot
Match: A0A6U0I9I6_9STRA (Peptidylprolyl isomerase n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0I9I6_9STRA)

HSP 1 Score: 125 bits (315), Expect = 2.190e-34
Identity = 58/84 (69.05%), Postives = 69/84 (82.14%), Query Frame = 2
Query:    2 GWLNGFGEEGVKFDSSRDRGRPFSFKVGTGMVIKAWDEALLDMQIGERRQITVPPQLGYGKRGAGGIIPPDSTLYFDVELLAVQ 253
            GWL+GF E   KFDSSRDRGRPFSF+VG G VI+ WDE+   M++GERRQ+ +P +LGYG RGAGGIIP  +TLYFDVELLA+Q
Sbjct:   99 GWLDGF-ESIKKFDSSRDRGRPFSFRVGAGQVIRGWDESFASMKVGERRQVIIPARLGYGDRGAGGIIPGGATLYFDVELLAIQ 181          
BLAST of mRNA_S-dermatodea_contig11283.818.1 vs. uniprot
Match: A0A6S8ZS26_9STRA (Peptidylprolyl isomerase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZS26_9STRA)

HSP 1 Score: 125 bits (315), Expect = 2.900e-34
Identity = 57/83 (68.67%), Postives = 69/83 (83.13%), Query Frame = 2
Query:    2 GWLNGFGEEGVKFDSSRDRGRPFSFKVGTGMVIKAWDEALLDMQIGERRQITVPPQLGYGKRGAGGIIPPDSTLYFDVELLAV 250
            GWL+GF +   KFDSSRDRGRPFSFKVG G VI+ WDE+   M++GERRQ+ +PP+LGYG RGAGG+IP  +TLYFDVELLA+
Sbjct:  109 GWLDGF-DSIRKFDSSRDRGRPFSFKVGAGQVIRGWDESFASMKVGERRQVIIPPRLGYGDRGAGGVIPGGATLYFDVELLAI 190          
BLAST of mRNA_S-dermatodea_contig11283.818.1 vs. uniprot
Match: A0A7S2Y1B3_9STRA (Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1B3_9STRA)

HSP 1 Score: 125 bits (315), Expect = 4.360e-34
Identity = 56/83 (67.47%), Postives = 70/83 (84.34%), Query Frame = 2
Query:    2 GWLNGFGEEGVKFDSSRDRGRPFSFKVGTGMVIKAWDEALLDMQIGERRQITVPPQLGYGKRGAGGIIPPDSTLYFDVELLAV 250
            GWLNGF +   KFDSS DR RPF+F+VG G VIK WDEA++ M++GE+R++ +PP+LGYGKRGAG +IPPDSTLYFDVELL +
Sbjct:  124 GWLNGF-DTAFKFDSSYDRRRPFTFQVGNGNVIKGWDEAVIQMKVGEKRRLIIPPELGYGKRGAGRVIPPDSTLYFDVELLGL 205          
BLAST of mRNA_S-dermatodea_contig11283.818.1 vs. uniprot
Match: B8BZS4_THAPS (Peptidylprolyl isomerase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZS4_THAPS)

HSP 1 Score: 122 bits (307), Expect = 5.420e-34
Identity = 58/83 (69.88%), Postives = 66/83 (79.52%), Query Frame = 2
Query:    2 GWLNGFGEEGVKFDSSRDRGRPFSFKVGTGMVIKAWDEALLDMQIGERRQITVPPQLGYGKRGAGGIIPPDSTLYFDVELLAV 250
            GWL+GF E G KFDSSRDRGRPF FKVG G VI+ WDEA   M++GERR I +P +L YG RGAGGIIP  +TLYFDVELLA+
Sbjct:   34 GWLDGF-ESGKKFDSSRDRGRPFQFKVGAGQVIRGWDEAFSTMKVGERRNIILPSRLAYGDRGAGGIIPGGATLYFDVELLAI 115          
BLAST of mRNA_S-dermatodea_contig11283.818.1 vs. uniprot
Match: A0A7S2R5E6_9STRA (Peptidylprolyl isomerase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R5E6_9STRA)

HSP 1 Score: 124 bits (312), Expect = 7.580e-34
Identity = 56/83 (67.47%), Postives = 69/83 (83.13%), Query Frame = 2
Query:    2 GWLNGFGEEGVKFDSSRDRGRPFSFKVGTGMVIKAWDEALLDMQIGERRQITVPPQLGYGKRGAGGIIPPDSTLYFDVELLAV 250
            GWL+GF  E  KFDSSRDRGRPFSFKVG G VI+ WDE+   M++GE+RQ+ +PP+LGYG RGAGG+IP  +TLYFD+ELLA+
Sbjct:  106 GWLDGFDSE-KKFDSSRDRGRPFSFKVGAGQVIRGWDESFSVMKVGEKRQVIIPPRLGYGDRGAGGVIPGGATLYFDMELLAI 187          
BLAST of mRNA_S-dermatodea_contig11283.818.1 vs. uniprot
Match: UPI0009E03E0B (FKBP-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Myxosarcina sp. GI1 TaxID=1541065 RepID=UPI0009E03E0B)

HSP 1 Score: 124 bits (312), Expect = 9.440e-34
Identity = 53/76 (69.74%), Postives = 65/76 (85.53%), Query Frame = 2
Query:   23 EEGVKFDSSRDRGRPFSFKVGTGMVIKAWDEALLDMQIGERRQITVPPQLGYGKRGAGGIIPPDSTLYFDVELLAV 250
            E+G KFDSSRDR RPFSFK+G G VIK WDE + DMQ+GERR + +PP+LGYG+RGAGG+IPP++TL FDVELL +
Sbjct:  120 EDGTKFDSSRDRNRPFSFKIGVGQVIKGWDEGVADMQVGERRTLIIPPELGYGERGAGGVIPPNATLIFDVELLKI 195          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11283.818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVA7_ECTSI2.120e-4787.21Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
A0A835ZFS8_9STRA1.480e-3772.94Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
K9U471_CHRTP1.970e-3575.32Peptidyl-prolyl cis-trans isomerase n=4 Tax=Chrooc... [more]
A0A7S3PZM0_9STRA6.690e-3570.73Peptidylprolyl isomerase n=1 Tax=Chaetoceros debil... [more]
A0A6U0I9I6_9STRA2.190e-3469.05Peptidylprolyl isomerase n=1 Tax=Minutocellus poly... [more]
A0A6S8ZS26_9STRA2.900e-3468.67Peptidylprolyl isomerase n=1 Tax=Ditylum brightwel... [more]
A0A7S2Y1B3_9STRA4.360e-3467.47Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japoni... [more]
B8BZS4_THAPS5.420e-3469.88Peptidylprolyl isomerase (Fragment) n=1 Tax=Thalas... [more]
A0A7S2R5E6_9STRA7.580e-3467.47Peptidylprolyl isomerase n=1 Tax=Eucampia antarcti... [more]
UPI0009E03E0B9.440e-3469.74FKBP-type peptidyl-prolyl cis-trans isomerase n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11283contigS-dermatodea_contig11283:6615..7518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size341
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924194.5607624-CDS-S-dermatodea_contig11283:6614..68201622924194.5607624-CDS-S-dermatodea_contig11283:6614..6820Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11283 6615..6820 -
1694079083.4394352-CDS-S-dermatodea_contig11283:6614..68201694079083.4394352-CDS-S-dermatodea_contig11283:6614..6820Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11283 6615..6820 -
1622924194.5712097-CDS-S-dermatodea_contig11283:7385..75181622924194.5712097-CDS-S-dermatodea_contig11283:7385..7518Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11283 7386..7518 -
1694079083.4496887-CDS-S-dermatodea_contig11283:7385..75181694079083.4496887-CDS-S-dermatodea_contig11283:7385..7518Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11283 7386..7518 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11283.818.1prot_S-dermatodea_contig11283.818.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11283 6615..7518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11283.818.1

>prot_S-dermatodea_contig11283.818.1 ID=prot_S-dermatodea_contig11283.818.1|Name=mRNA_S-dermatodea_contig11283.818.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=113bp
RVVERVRRGRSQVRLFARPRKAVQLQSGHRHGYQGLGRGFARHADRGAPA
NHGTAAAWLWQTRRRRHHPPGLHPLLRRGASCRPTLGQTLHRGGPQYRAV
DQMRRARRSGAAG
back to top

mRNA from alignment at S-dermatodea_contig11283:6615..7518-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11283.818.1 ID=mRNA_S-dermatodea_contig11283.818.1|Name=mRNA_S-dermatodea_contig11283.818.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=904bp|location=Sequence derived from alignment at S-dermatodea_contig11283:6615..7518- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGGTGGTTGAACGGGTTCGGCGAGGAAGGAGTCAAGTTCGACTCTTCGC GCGACCGCGGAAGGCCGTTCAGCTTCAAAGTGGGCACCGGCATGGTTATC AAGGCCTGGGACGAGGCTTTGCTCGACATGCAGGTCAGACAAGGGCCACC ACCTGAGTATGAATTACACCGCCATTGCAGGCAGCTTTTAGGTCCCGGTA GGTCAGGGGCAGGTCGACGGACCTGCAAGTGAAGGGAGTGCGGCAGGTGA CCTCTACCGTGCAGGTAGTCGTTATTGTGATATAACTTGGTTGGACGGTA AGGTGTTGAATCCAGAGTTGTGACGTGGCGCACCGAAAAGCCTTTCCCGC GTTGCTGCAGCCATGGGCACGGTATCTTGCCTGGCCTTGACCGCACTATT CGTCAAAATCAGCATAATTACAGCAGATTGTCGCTTTCACCTTTTTTATC GAGGTTGGAACTTGCTTTGGCGAGTGTTTTCCGTCTGTTTGTTTATTCTC CTTGATACCGCGATCGACCATACGATCACGGCTTACTGGGTTTTGACATC AGTTATGTGAGACCAACAACAACACCAATCAACAACAGCCTATTGAAGTC AGCAGTTTTCGAAGTACAACCCGATATGTTCGAAGTCGGCCATACTCACG GCGCCATCACATAGTTTTCCCCGCGTACGGCGCCACACCGCCCCTCAGAT CGGGGAGCGCCGGCAAATCACGGTACCGCCGCAGCTTGGTTATGGCAAAC GCGGCGCAGGAGGCATCATCCCCCCGGACTCCACCCTCTACTTCGACGTG GAGCTTCTTGCCGTCCAACCTTAGGACAGACACTGCATCGCGGAGGGCCG CAATACAGAGCTGTAGATCAGATGAGGAGGGCTAGGAGATCGGGGGCGGC GGGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig11283:6615..7518-

>mRNA_S-dermatodea_contig11283.818.1 ID=mRNA_S-dermatodea_contig11283.818.1|Name=mRNA_S-dermatodea_contig11283.818.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at S-dermatodea_contig11283:6615..7518- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGGTGGTTGAACGGGTTCGGCGAGGAAGGAGTCAAGTTCGACTCTTCGC
GCGACCGCGGAAGGCCGTTCAGCTTCAAAGTGGGCACCGGCATGGTTATC
AAGGCCTGGGACGAGGCTTTGCTCGACATGCAGAGGGTGGTTGAACGGGT
TCGGCGAGGAAGGAGTCAAGTTCGACTCTTCGCGCGACCGCGGAAGGCCG
TTCAGCTTCAAAGTGGGCACCGGCATGGTTATCAAGGCCTGGGACGAGGC
TTTGCTCGACATGCAGATCGGGGAGCGCCGGCAAATCACGGTACCGCCGC
AGCTTGGTTATGGCAAACGCGGCGCAGGAGGCATCATCCCCCCGGACTCC
ACCCTCTACTTCGACGTGGAGCTTCTTGCCGTCCAACCTTAGGACAGACA
CTGCATCGCGGAGGGCCGCAATACAGAGCTGTAGATCAGATGAGGAGGGC
TAGGAGATCGGGGGCGGCGGGGATCGGGGAGCGCCGGCAAATCACGGTAC
CGCCGCAGCTTGGTTATGGCAAACGCGGCGCAGGAGGCATCATCCCCCCG
GACTCCACCCTCTACTTCGACGTGGAGCTTCTTGCCGTCCAACCTTAGGA
CAGACACTGCATCGCGGAGGGCCGCAATACAGAGCTGTAGATCAGATGAG
GAGGGCTAGGAGATCGGGGGCGGCGGGG
back to top