mRNA_S-dermatodea_contig11275.814.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11275.814.1
Unique NamemRNA_S-dermatodea_contig11275.814.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11275.814.1 vs. uniprot
Match: D7FV68_ECTSI (Probable chromatin remodelling complex ATPase chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV68_ECTSI)

HSP 1 Score: 436 bits (1121), Expect = 4.510e-140
Identity = 214/231 (92.64%), Postives = 221/231 (95.67%), Query Frame = 1
Query:    1 EQWFNLEIDDKEAKEQIIHQLHKILRPFMLRRLKADVEKSLPPKTETILYVGEFTAGWLSSKQKEVYRNVLLRDIDMVNGTAGGGSAGRTVILNIVMQLRKCCNHPYLFAGVEDRKLDPLGDHLVLSCGKMVLLDKLLAKLYAKGHRVLIFTQMTKMLDIFEDFCVMRRYEYCRIDGNTSYESREDCIDAYNKPESTKFVFMLSTRAGGLGINLQTADTVILYDSDWNPQA 693
            +QWFNLEIDDKEAKE IIHQLHKILRPFMLRRLKADVEKSLPPKTETILYVG      LSSKQKEVYRNVLLRDIDMVNGT GGG+AGRTVILNIVMQLRKCCNHPYLFAGVEDRKLDPLGDHL+++CGKMVLLDKLL KL+ KGHRVLIFTQMTKMLDIFEDFCVMRRYEYCRIDGNTSYESREDCIDAYNKP+STKFVFMLSTRAGGLGINLQTADTVILYDSDWNPQA
Sbjct:  447 DQWFNLEIDDKEAKENIIHQLHKILRPFMLRRLKADVEKSLPPKTETILYVG------LSSKQKEVYRNVLLRDIDMVNGTGGGGNAGRTVILNIVMQLRKCCNHPYLFAGVEDRKLDPLGDHLIINCGKMVLLDKLLKKLFDKGHRVLIFTQMTKMLDIFEDFCVMRRYEYCRIDGNTSYESREDCIDAYNKPDSTKFVFMLSTRAGGLGINLQTADTVILYDSDWNPQA 671          
BLAST of mRNA_S-dermatodea_contig11275.814.1 vs. uniprot
Match: A0A835YGX5_9STRA (Putative chromatin remodelling complex ATPase chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGX5_9STRA)

HSP 1 Score: 383 bits (984), Expect = 1.130e-120
Identity = 188/232 (81.03%), Postives = 208/232 (89.66%), Query Frame = 1
Query:    1 EQWFNLEIDDKEAKEQIIHQLHKILRPFMLRRLKADVEKSLPPKTETILYVGEFTAGWLSSKQKEVYRNVLLRDIDMVNGTAGGG-SAGRTVILNIVMQLRKCCNHPYLFAGVEDRKLDPLGDHLVLSCGKMVLLDKLLAKLYAKGHRVLIFTQMTKMLDIFEDFCVMRRYEYCRIDGNTSYESREDCIDAYNKPESTKFVFMLSTRAGGLGINLQTADTVILYDSDWNPQA 693
            ++WFNLEIDDKEAKE++I QLHKILRPFMLRRLKADVEKSLPPK ETIL+VG      +S KQKEVYRN+LLRDID VNGT GGG +AGRT ILNIVMQLRKCCNHPYLFAGVEDR  DPLG+HL+ +CGKMVLL KLL KL  +G+RVLIF+QMT+MLDI EDFC+MRRYEYCRIDG+TSYE RED IDAYN+P S+KF+FMLSTRAGGLGINLQTADTVILYDSDWNPQA
Sbjct:  477 DEWFNLEIDDKEAKERMIQQLHKILRPFMLRRLKADVEKSLPPKNETILFVG------MSYKQKEVYRNILLRDIDAVNGTGGGGGAAGRTAILNIVMQLRKCCNHPYLFAGVEDRSQDPLGEHLIQNCGKMVLLSKLLGKLKERGNRVLIFSQMTRMLDILEDFCLMRRYEYCRIDGSTSYEDREDFIDAYNRPNSSKFIFMLSTRAGGLGINLQTADTVILYDSDWNPQA 702          
BLAST of mRNA_S-dermatodea_contig11275.814.1 vs. uniprot
Match: A0A4Q3BVS4_9BACT (DEAD/DEAH box helicase n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4Q3BVS4_9BACT)

HSP 1 Score: 325 bits (833), Expect = 3.230e-107
Identity = 158/226 (69.91%), Postives = 183/226 (80.97%), Query Frame = 1
Query:    7 WFNLEIDDKEAKEQIIHQLHKILRPFMLRRLKADVEKSLPPKTETILYVGEFTAGWLSSKQKEVYRNVLLRDIDMVNGTAGGGSA-GRTVILNIVMQLRKCCNHPYLFAGVEDRKLDPLGDHLVLSCGKMVLLDKLLAKLYAKGHRVLIFTQMTKMLDIFEDFCVMRRYEYCRIDGNTSYESREDCIDAYNKPESTKFVFMLSTRAGGLGINLQTADTVILYDSDW 681
            WFNL++DD  AK+++I QLHK+LRPFMLRRLKADVE SLPPK+ETIL+ G      +S+ QK +YR +LLRDID +N      S   RT ILNIVMQLRKCCNHPYLF  VEDR LDPLGDHL  +CGKMVL+DKLL K+  +GHRVLIF+QMT+MLDI ED+ + R Y YCRIDGNTSYE RED I+ +N+P S KFVF+LSTRAGGLGINLQTADTVILYDSDW
Sbjct:  229 WFNLDVDDTAAKQRMISQLHKLLRPFMLRRLKADVESSLPPKSETILFTG------MSTLQKTLYRQILLRDIDTINSAGSSNSQQSRTAILNIVMQLRKCCNHPYLFPSVEDRSLDPLGDHLFANCGKMVLMDKLLRKMKERGHRVLIFSQMTRMLDIMEDYLISRDYRYCRIDGNTSYEEREDRIEDFNRPNSDKFVFILSTRAGGLGINLQTADTVILYDSDW 448          
BLAST of mRNA_S-dermatodea_contig11275.814.1 vs. uniprot
Match: F0Y4E7_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4E7_AURAN)

HSP 1 Score: 330 bits (847), Expect = 1.900e-106
Identity = 159/234 (67.95%), Postives = 191/234 (81.62%), Query Frame = 1
Query:    1 EQWFNLEIDDKEAKEQIIHQLHKILRPFMLRRLKADVEKSLPPKTETILYVGEFTAGWLSSKQKEVYRNVLLRDIDMVNGTAGGGS---AGRTVILNIVMQLRKCCNHPYLFAGVEDRKLDPLGDHLVLSCGKMVLLDKLLAKLYAKGHRVLIFTQMTKMLDIFEDFCVMRRYEYCRIDGNTSYESREDCIDAYNKPESTKFVFMLSTRAGGLGINLQTADTVILYDSDWNPQA 693
            ++WF+L+++D++AK+ +I QLHK+LRPF+LRRLK DVEKSLPPKTETIL+ G      LS  QK+VY+++L RD  ++ G   GG    A R  + NI MQLRKCCNHPYLF GVEDR LDPLGDH+V +CGK+VLLDKLLAKL  +GHRVL+F+QMT +LD+ EDF  MR YEYCRIDGNTSYE R+D I+AYN P S KFVF+LSTRAGGLGINLQTADTV+LYDSDWNPQA
Sbjct:  318 DEWFDLDVEDEDAKKTMITQLHKLLRPFVLRRLKVDVEKSLPPKTETILFTG------LSVSQKQVYKSLLKRDASLLAGPEAGGDRAGASRAKMANIAMQLRKCCNHPYLFQGVEDRNLDPLGDHVVANCGKLVLLDKLLAKLKDRGHRVLVFSQMTALLDVLEDFMAMRDYEYCRIDGNTSYEERDDLIEAYNAPNSDKFVFLLSTRAGGLGINLQTADTVVLYDSDWNPQA 545          
BLAST of mRNA_S-dermatodea_contig11275.814.1 vs. uniprot
Match: A0A7S3HIT7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HIT7_9STRA)

HSP 1 Score: 335 bits (859), Expect = 2.260e-104
Identity = 160/230 (69.57%), Postives = 194/230 (84.35%), Query Frame = 1
Query:    7 WFNLEIDDKEAKEQIIHQLHKILRPFMLRRLKADVEKSLPPKTETILYVGEFTAGWLSSKQKEVYRNVLLRDIDMVNGTAGGGSAG-RTVILNIVMQLRKCCNHPYLFAGVEDRKLDPLGDHLVLSCGKMVLLDKLLAKLYAKGHRVLIFTQMTKMLDIFEDFCVMRRYEYCRIDGNTSYESREDCIDAYNKPESTKFVFMLSTRAGGLGINLQTADTVILYDSDWNPQA 693
            WFNL++DD EAK+++I QLHK+LRPFMLRRLKADVEKSLPPK+ETIL+ G      +S+ QK +YR+VL+RDID +NG +   S G RT ILNIVMQLRKCCNHPYLF GVEDR  DP+G+HL ++CGKMVLL KLL K+  +GHRVL+F+QMT+M+DI ED+ + + Y+YCRIDGNTSYE RED I  +N+P+S KF+F+LSTRAGGLGINLQTADTVILYDSDWNPQA
Sbjct:  152 WFNLDVDDNEAKQRMIGQLHKLLRPFMLRRLKADVEKSLPPKSETILFTG------MSAVQKNLYRSVLMRDIDTINGASTTNSNGSRTAILNIVMQLRKCCNHPYLFPGVEDRAQDPMGEHLYMNCGKMVLLHKLLGKMKERGHRVLVFSQMTRMIDILEDYMISQGYQYCRIDGNTSYEDREDRIADFNRPDSDKFIFVLSTRAGGLGINLQTADTVILYDSDWNPQA 375          
BLAST of mRNA_S-dermatodea_contig11275.814.1 vs. uniprot
Match: M4C6I8_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C6I8_HYAAE)

HSP 1 Score: 329 bits (844), Expect = 5.090e-104
Identity = 162/229 (70.74%), Postives = 190/229 (82.97%), Query Frame = 1
Query:    7 WFNLEIDDKEAKEQIIHQLHKILRPFMLRRLKADVEKSLPPKTETILYVGEFTAGWLSSKQKEVYRNVLLRDIDMVNGTAGGGSAGRTVILNIVMQLRKCCNHPYLFAGVEDRKLDPLGDHLVLSCGKMVLLDKLLAKLYAKGHRVLIFTQMTKMLDIFEDFCVMRRYEYCRIDGNTSYESREDCIDAYNKPESTKFVFMLSTRAGGLGINLQTADTVILYDSDWNPQA 693
            WFNL++DD EAK+Q+I QLHKILRPFMLRRLKADVEKSLPPK ET+L++G      +S  QK +Y+++LLRD++ V G AGG S  R+ + NIVMQLRKCC HPYLF G EDR LDPLG+H+V +CGKMVL+DKLL KL  +G RVLIFTQMT++LDI EDFC MR+YEYCRIDG TSYE RE  ID +N PES+KF+F+LSTRAGGLGINL TAD VILYDSDWNPQA
Sbjct:  317 WFNLDVDDDEAKKQMISQLHKILRPFMLRRLKADVEKSLPPKKETLLFIG------MSEMQKVLYKSLLLRDLNTVMGGAGGVS--RSALQNIVMQLRKCCGHPYLFEGQEDRSLDPLGEHVVHNCGKMVLMDKLLKKLKQRGSRVLIFTQMTRVLDIMEDFCRMRQYEYCRIDGQTSYEVRESSIDEFNHPESSKFLFLLSTRAGGLGINLYTADVVILYDSDWNPQA 537          
BLAST of mRNA_S-dermatodea_contig11275.814.1 vs. uniprot
Match: W7TKM9_9STRA (Putative chromatin remodelling complex atpase chain (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKM9_9STRA)

HSP 1 Score: 324 bits (830), Expect = 2.970e-103
Identity = 158/229 (69.00%), Postives = 184/229 (80.35%), Query Frame = 1
Query:    7 WFNLEIDDKEAKEQIIHQLHKILRPFMLRRLKADVEKSLPPKTETILYVGEFTAGWLSSKQKEVYRNVLLRDIDMVNGTAGGGSAGRTVILNIVMQLRKCCNHPYLFAGVEDRKLDPLGDHLVLSCGKMVLLDKLLAKLYAKGHRVLIFTQMTKMLDIFEDFCVMRRYEYCRIDGNTSYESREDCIDAYNKPESTKFVFMLSTRAGGLGINLQTADTVILYDSDWNPQA 693
            WFNLEIDD E K+++I QLHKILRPFMLRRLKADVEKSLP KTET+++        +   Q++ Y+ +L RD+ ++   AG  +AGRT +LN+VMQLRK CNHPYLF GVEDR LDPLGDH++ +CGKM LLDKLL KL  KGHRVL+F QMT+MLDI EDF  MR + YCRIDGNTSYE RE+ ID YN P S+KF F+LSTRAGGLGINLQTADTVILYDSDWNPQA
Sbjct:  458 WFNLEIDDAEQKQRLITQLHKILRPFMLRRLKADVEKSLPKKTETLVFCE------MMPTQRDTYKKILERDLSVI---AGSETAGRTAVLNLVMQLRKACNHPYLFTGVEDRTLDPLGDHVIKNCGKMYLLDKLLKKLKEKGHRVLVFCQMTRMLDILEDFMYMRGHSYCRIDGNTSYEERENLIDTYNAPNSSKFAFLLSTRAGGLGINLQTADTVILYDSDWNPQA 677          
BLAST of mRNA_S-dermatodea_contig11275.814.1 vs. uniprot
Match: A0A0W8D9Y4_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D9Y4_PHYNI)

HSP 1 Score: 328 bits (840), Expect = 5.950e-103
Identity = 161/229 (70.31%), Postives = 188/229 (82.10%), Query Frame = 1
Query:    7 WFNLEIDDKEAKEQIIHQLHKILRPFMLRRLKADVEKSLPPKTETILYVGEFTAGWLSSKQKEVYRNVLLRDIDMVNGTAGGGSAGRTVILNIVMQLRKCCNHPYLFAGVEDRKLDPLGDHLVLSCGKMVLLDKLLAKLYAKGHRVLIFTQMTKMLDIFEDFCVMRRYEYCRIDGNTSYESREDCIDAYNKPESTKFVFMLSTRAGGLGINLQTADTVILYDSDWNPQA 693
            WFNL++DD EAK+Q+I QLHKILRPFMLRRLKADVEKSLPPK ET+L+VG      +S  QK +Y+++LLRD++ + G  GG S  ++ + NIVMQLRKCC HPYLF G EDR LDPLG+H+V +CGKMVLLDKLL KL  +G RVLIFTQMT++LDI EDFC MR Y+YCRIDG TSYE RE  ID YNKP S+KF+F+LSTRAGGLGINL TAD VILYDSDWNPQA
Sbjct:  446 WFNLDVDDDEAKKQMISQLHKILRPFMLRRLKADVEKSLPPKKETLLFVG------MSEMQKALYKSLLLRDMNTIMGGTGGVS--KSALQNIVMQLRKCCGHPYLFEGQEDRSLDPLGEHVVENCGKMVLLDKLLKKLKQRGSRVLIFTQMTRVLDIMEDFCRMRLYDYCRIDGQTSYEDRESSIDEYNKPNSSKFLFLLSTRAGGLGINLYTADVVILYDSDWNPQA 666          
BLAST of mRNA_S-dermatodea_contig11275.814.1 vs. uniprot
Match: F0W8L4_9STRA (Uncharacterized protein AlNc14C35G3140 n=2 Tax=Albugo TaxID=65356 RepID=F0W8L4_9STRA)

HSP 1 Score: 334 bits (856), Expect = 7.590e-103
Identity = 163/231 (70.56%), Postives = 192/231 (83.12%), Query Frame = 1
Query:    1 EQWFNLEIDDKEAKEQIIHQLHKILRPFMLRRLKADVEKSLPPKTETILYVGEFTAGWLSSKQKEVYRNVLLRDIDMVNGTAGGGSAGRTVILNIVMQLRKCCNHPYLFAGVEDRKLDPLGDHLVLSCGKMVLLDKLLAKLYAKGHRVLIFTQMTKMLDIFEDFCVMRRYEYCRIDGNTSYESREDCIDAYNKPESTKFVFMLSTRAGGLGINLQTADTVILYDSDWNPQA 693
            ++WFNL++DD EAK+Q+I QLHKILRPFMLRRLKADVEKSLPPK ET+L+VG      +S  QK +Y+++LLRD+D + G  G G   R+ + NIVMQLRKCC HPYLF G EDR LDPLGDH+V +CGKMVLLDKLL KL  +G RVL+FTQMT++LDIFEDFC MR+YEYCRIDG TSYE RE  I+AYN+ +S+KFVF+LSTRAGGLGINL TAD VILYDSDWNPQA
Sbjct:  451 DEWFNLDVDDDEAKKQMIGQLHKILRPFMLRRLKADVEKSLPPKKETLLFVG------MSLMQKALYKSLLLRDMDTITGKVGAG-VSRSALQNIVMQLRKCCGHPYLFEGQEDRTLDPLGDHVVENCGKMVLLDKLLKKLKQRGSRVLLFTQMTRVLDIFEDFCRMRKYEYCRIDGRTSYEDRESAIEAYNELDSSKFVFLLSTRAGGLGINLYTADIVILYDSDWNPQA 674          
BLAST of mRNA_S-dermatodea_contig11275.814.1 vs. uniprot
Match: B7G256_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G256_PHATC)

HSP 1 Score: 334 bits (856), Expect = 1.290e-102
Identity = 162/231 (70.13%), Postives = 192/231 (83.12%), Query Frame = 1
Query:    1 EQWFNLEIDDKEAKEQIIHQLHKILRPFMLRRLKADVEKSLPPKTETILYVGEFTAGWLSSKQKEVYRNVLLRDIDMVNGTAGGGSAGRTVILNIVMQLRKCCNHPYLFAGVEDRKLDPLGDHLVLSCGKMVLLDKLLAKLYAKGHRVLIFTQMTKMLDIFEDFCVMRRYEYCRIDGNTSYESREDCIDAYNKPESTKFVFMLSTRAGGLGINLQTADTVILYDSDWNPQA 693
            ++WFNL+I+D + K ++I QLHKILRPFMLRRLKADVEKSLPPK ETIL+ G      +S+ QK++YR++L+RDID V GT+G     RT ILNIVMQLRKC  HPYLF G EDR L PLG+HLV +CGKMV+LDKLL +L+ +GHRVL+FTQMT++LDI ED+ VMRR+ YCRIDGNTSYE RE+ IDAYN P S KF+F+LSTRAGGLGINLQTAD VILYDSDWNPQA
Sbjct:  513 DEWFNLDIEDNDEKNKLISQLHKILRPFMLRRLKADVEKSLPPKHETILFTG------MSAMQKKLYRDILIRDIDAVQGTSGS----RTAILNIVMQLRKCAGHPYLFPGTEDRSLPPLGEHLVENCGKMVVLDKLLKRLHERGHRVLLFTQMTRVLDIMEDYLVMRRFPYCRIDGNTSYEQREEYIDAYNAPNSEKFIFLLSTRAGGLGINLQTADVVILYDSDWNPQA 733          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11275.814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV68_ECTSI4.510e-14092.64Probable chromatin remodelling complex ATPase chai... [more]
A0A835YGX5_9STRA1.130e-12081.03Putative chromatin remodelling complex ATPase chai... [more]
A0A4Q3BVS4_9BACT3.230e-10769.91DEAD/DEAH box helicase n=1 Tax=Verrucomicrobiaceae... [more]
F0Y4E7_AURAN1.900e-10667.95Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S3HIT7_9STRA2.260e-10469.57Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
M4C6I8_HYAAE5.090e-10470.74Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
W7TKM9_9STRA2.970e-10369.00Putative chromatin remodelling complex atpase chai... [more]
A0A0W8D9Y4_PHYNI5.950e-10370.31Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
F0W8L4_9STRA7.590e-10370.56Uncharacterized protein AlNc14C35G3140 n=2 Tax=Alb... [more]
B7G256_PHATC1.290e-10270.13Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11275contigS-dermatodea_contig11275:3649..6758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score439.9
Seed ortholog evalue7.5e-121
Seed eggNOG ortholog2880.D7FV68
KEGG koko:K11654
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG0385@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons4
Model size702
Cds size702
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11275.814.1prot_S-dermatodea_contig11275.814.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11275 3649..6758 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924194.371555-CDS-S-dermatodea_contig11275:3648..37711622924194.371555-CDS-S-dermatodea_contig11275:3648..3771Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11275 3649..3771 -
1694079083.315527-CDS-S-dermatodea_contig11275:3648..37711694079083.315527-CDS-S-dermatodea_contig11275:3648..3771Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11275 3649..3771 -
1622924194.3804598-CDS-S-dermatodea_contig11275:4070..42591622924194.3804598-CDS-S-dermatodea_contig11275:4070..4259Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11275 4071..4259 -
1694079083.3276842-CDS-S-dermatodea_contig11275:4070..42591694079083.3276842-CDS-S-dermatodea_contig11275:4070..4259Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11275 4071..4259 -
1622924194.3891294-CDS-S-dermatodea_contig11275:5277..54951622924194.3891294-CDS-S-dermatodea_contig11275:5277..5495Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11275 5278..5495 -
1694079083.3406749-CDS-S-dermatodea_contig11275:5277..54951694079083.3406749-CDS-S-dermatodea_contig11275:5277..5495Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11275 5278..5495 -
1622924194.398735-CDS-S-dermatodea_contig11275:6586..67581622924194.398735-CDS-S-dermatodea_contig11275:6586..6758Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11275 6587..6758 -
1694079083.3554816-CDS-S-dermatodea_contig11275:6586..67581694079083.3554816-CDS-S-dermatodea_contig11275:6586..6758Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11275 6587..6758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11275.814.1

>prot_S-dermatodea_contig11275.814.1 ID=prot_S-dermatodea_contig11275.814.1|Name=mRNA_S-dermatodea_contig11275.814.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=234bp
EQWFNLEIDDKEAKEQIIHQLHKILRPFMLRRLKADVEKSLPPKTETILY
VGEFTAGWLSSKQKEVYRNVLLRDIDMVNGTAGGGSAGRTVILNIVMQLR
KCCNHPYLFAGVEDRKLDPLGDHLVLSCGKMVLLDKLLAKLYAKGHRVLI
FTQMTKMLDIFEDFCVMRRYEYCRIDGNTSYESREDCIDAYNKPESTKFV
FMLSTRAGGLGINLQTADTVILYDSDWNPQARK*
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mRNA from alignment at S-dermatodea_contig11275:3649..6758-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11275.814.1 ID=mRNA_S-dermatodea_contig11275.814.1|Name=mRNA_S-dermatodea_contig11275.814.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3110bp|location=Sequence derived from alignment at S-dermatodea_contig11275:3649..6758- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGCAGTGGTTTAACCTCGAGATCGATGATAAGGAGGCGAAGGAGCAGAT CATCCACCAGCTGCACAAGATCCTCCGTCCGTTCATGCTCCGAAGGCTCA AGGCGGACGTGGAGAAGAGCCTTCCTCCAAAGACGGAGACCATCCTCTAC GTAGGCGAGTTTACCGCCGGCTGTGCTTGTTTTATGTGTGTGTGTGTGTG TGTGTTGGTTTTATTTGATTTCATTTGACTCTAGATTGGAGTTTGATTTC ATTTTGATTTTTCCTTTTTTTTGTGTTGTCTACGTAGGCGAGTTTACCGC TGTGCTTGTTATGTGTGTGTTTGCTTTTGTAGTGTGTATGTGTGTGTGTT TGTGTGTTTGTGTACCTTTTTTTTAAGTGTGTGTGCTTTTGTTACTCTAA TACTGTATATGTTTGTGTGTGCTTTTTGTTGGGGAATATCATATGTGTAT TATTTTGTTATATTATGGATGCGTACTTCTCTCCTCTCTGTGAACGTCCC TAAAACTATACCGTCTTGATCAGTGTGTGCCAGGTTGCTAGACCATGGCG TGTCGGGTTACTATAATAGGCTATGACACGTCAGGCCACTATTATTACTA CCAATAGACTATGACGTCATGACCATCGGAGATAAGTAGGCGTGACACGT CCGCCCACTTTTAATGCTATCAATAGATATGTAGGCTTGTCTCGAGTTGA TGCCCGATCTCAGGAAGTCGCGTGTCGCCCCCTGTCTCAACACAGCCATT CCTCGACCTTGCCTGACCCTCGTCTTCGGCCCACACCCACGAGGTGTGAT CCATCTAGAGACCAGCCCTAGCGAGTCCGAAGTCAGGAGGTCACCCCCTC AACTCTTTGCTTTTTTGCACACATGTTAATACTAATATTAGTATTATAGA CCGGTTGTTTTTCCGAGGTAGGTCCGTCTGTGGTCACGAGGGATCATCCC ATCTCTCTTATCTCTTTTCCCCGGTTCTTACCTTTGCTTTTTATCGCGAA TGCCTTGGGTTTGGCACTTGTCGGATTTTGCCCACAAGCTCTCACGCTGT CGCGCTCTCCGCGGCGGAGGTAGAGAGATATAAATACACATCGACTCTGC CCTGATTCGAGTCCGCCTCCTCCGCCTTCCCCTGGCGTTGGCGAACCAGT TCAACCACGACGGCTTGCGACACCATGCGGCATTATAATCGACTCGACCT CTCCCGCCCGCCCGCCCGCCTGCCCGCCGTTGTTATACACACCTACACCG ATACGACCTCCAGGGTTGTCGTCCAAGCAGAAAGAAGTTTACCGGAACGT TCTTCTGCGAGACATCGACATGGTCAACGGCACTGCCGGGGGCGGCAGCG CCGGGCGCACGGTGATCCTGAACATCGTGATGCAGCTCCGCAAGTGCTGC AATCACCCCTACCTCTTCGCGGGCGTGGAGGACAGGAAGCTCGATCCGCT CGGCGACCACCTTGTGCTCAGCTGCGGCAAGGTTTGTGGTTGAGGAGGTG GAGTATTAGTAGTGTATCGGACGATAAGGGCTATTTAGAAGACGCTTGCG TCGTAACCCTGTTACATCTGGCCGTAGTGCAATAAGGACCTGTGGAGAGG AGAGGCGAGGTAGGTAGCATTGTCCGATTCCGAGACCTCTCCTATCGCTC TTTTTTTTCTTCTGTATCTGGGGTACAGTACATACTATTTATTTATTTCT GGTATCGTACCTATAGTAAGTACTGAACTAGGGGCGGTACGGTGTATCGT AGAAGTTAGAGTTAGACTTATTATTATAATTATTATATTATGACGGAGGA TCATACCATAGTTAATACTGTAGGTCCAAATTAGCTATTACACAAGTCTC AACCTAGAAAAACAAAAACATCAAAATAGGCTGGAATTATCGACATTTCA CGGTCGATGTTCTTGTCTTATGACAATATATCGTGGTGTTTTTCTTCGCG AGACCCTTTTGTTCTTGTTTCGGTACAGTATTCATGGTCAGAATATAGCT GGGGTACAGTAGTCATGGTGATGAGATTCGGTCCTCATTCACTGTGTGCC ACCGTAGTATTATAGTTATTTTTCTCCTTTGACTCTTTGCGTATCTGACC ACAAGTCGGATAGGCCGGATGAACCCGAGAGCGGCTTTACGTGTGCAAAT CAATCAACCAATCAATCAATCAAACAATTAATCAATCAACCAACCAATCA ATCAATCGTGATTTACCGTGTGCTCGGTTGCAACAGCAGATCCTCCCGGC GAAACCAACCAACCCCCTACACCATTCGCTTGCCGTAAAAAACGCACGCG GTCGGGCAAGGCTCTCTCTCGTTTTTTGCATTCGCGAATTGCAGTCACGC CACACACCAGGTCAAGAAGAGCAAACAAAAAAGGCTCAGGCATCCCTTTT TTCTTTCATGTCTTGTATTTTTAGTGCTTGGGCGGCACTGATCGATCCAT TCCACTCCTCACCTTCCCACCCGCCCGCCCTCCCGCTCGCTCGCCGCAGA TGGTGCTGCTGGACAAGCTGCTGGCGAAGCTGTACGCAAAGGGGCACCGC GTGCTGATCTTCACCCAGATGACAAAAATGCTGGACATCTTCGAAGACTT TTGCGTCATGCGGCGATACGAGTATTGCCGCATCGACGGGAACACCTCGT ACGAGAGCCGCGAGGACTGCATCGATGCCTACAACAAGGTGACCGAACGG GTAGCTAGCTCACTGCCTCACTGGCTGGGTGGGTGGGTGGGTGGGTGGGT GGGTGGGTGGGTGGGTCGGTGGGTCGGTGGGTGGGTGGGTGGGTGGGTGG GTAGGGTGGGAGGGTGGATGGGTGAGGCGATGCGGCGCCAGCCCACGAAA AATGTTTAAAAGTACTGTACCATGGTATATATTTTCAAGACCTGAAAACA AAATCAAGCTGACGCTTCCCGTGACTCTGCGTGCGCGCCCCCCCCCCCCC CTCTGGAAAAACGCTTTGGTGCTACTCGGATATGCAGCCGGAATCGACGA AATTCGTCTTCATGCTGTCCACTAGGGCGGGCGGGCTGGGCATCAACCTA CAGACGGCAGACACTGTCATCCTTTACGACTCTGACTGGAACCCTCAGGC AAGAAAGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11275:3649..6758-

>mRNA_S-dermatodea_contig11275.814.1 ID=mRNA_S-dermatodea_contig11275.814.1|Name=mRNA_S-dermatodea_contig11275.814.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1404bp|location=Sequence derived from alignment at S-dermatodea_contig11275:3649..6758- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGCAGTGGTTTAACCTCGAGATCGATGATAAGGAGGCGAAGGAGCAGAT
CATCCACCAGCTGCACAAGATCCTCCGTCCGTTCATGCTCCGAAGGCTCA
AGGCGGACGTGGAGAAGAGCCTTCCTCCAAAGACGGAGACCATCCTCTAC
GTAGGCGAGTTTACCGCCGGCTGAGCAGTGGTTTAACCTCGAGATCGATG
ATAAGGAGGCGAAGGAGCAGATCATCCACCAGCTGCACAAGATCCTCCGT
CCGTTCATGCTCCGAAGGCTCAAGGCGGACGTGGAGAAGAGCCTTCCTCC
AAAGACGGAGACCATCCTCTACGTAGGCGAGTTTACCGCCGGCTGGTTGT
CGTCCAAGCAGAAAGAAGTTTACCGGAACGTTCTTCTGCGAGACATCGAC
ATGGTCAACGGCACTGCCGGGGGCGGCAGCGCCGGGCGCACGGTGATCCT
GAACATCGTGATGCAGCTCCGCAAGTGCTGCAATCACCCCTACCTCTTCG
CGGGCGTGGAGGACAGGAAGCTCGATCCGCTCGGCGACCACCTTGTGCTC
AGCTGCGGCAAGGGTTGTCGTCCAAGCAGAAAGAAGTTTACCGGAACGTT
CTTCTGCGAGACATCGACATGGTCAACGGCACTGCCGGGGGCGGCAGCGC
CGGGCGCACGGTGATCCTGAACATCGTGATGCAGCTCCGCAAGTGCTGCA
ATCACCCCTACCTCTTCGCGGGCGTGGAGGACAGGAAGCTCGATCCGCTC
GGCGACCACCTTGTGCTCAGCTGCGGCAAGATGGTGCTGCTGGACAAGCT
GCTGGCGAAGCTGTACGCAAAGGGGCACCGCGTGCTGATCTTCACCCAGA
TGACAAAAATGCTGGACATCTTCGAAGACTTTTGCGTCATGCGGCGATAC
GAGTATTGCCGCATCGACGGGAACACCTCGTACGAGAGCCGCGAGGACTG
CATCGATGCCTACAACAAGATGGTGCTGCTGGACAAGCTGCTGGCGAAGC
TGTACGCAAAGGGGCACCGCGTGCTGATCTTCACCCAGATGACAAAAATG
CTGGACATCTTCGAAGACTTTTGCGTCATGCGGCGATACGAGTATTGCCG
CATCGACGGGAACACCTCGTACGAGAGCCGCGAGGACTGCATCGATGCCT
ACAACAAGCCGGAATCGACGAAATTCGTCTTCATGCTGTCCACTAGGGCG
GGCGGGCTGGGCATCAACCTACAGACGGCAGACACTGTCATCCTTTACGA
CTCTGACTGGAACCCTCAGGCAAGAAAGTAGCCGGAATCGACGAAATTCG
TCTTCATGCTGTCCACTAGGGCGGGCGGGCTGGGCATCAACCTACAGACG
GCAGACACTGTCATCCTTTACGACTCTGACTGGAACCCTCAGGCAAGAAA
GTAG
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