mRNA_S-dermatodea_contig112.774.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig112.774.1
Unique NamemRNA_S-dermatodea_contig112.774.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig112.774.1 vs. uniprot
Match: A0A6H5JAQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAQ4_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.860e-35
Identity = 63/88 (71.59%), Postives = 75/88 (85.23%), Query Frame = 1 
Query:  748 SNATCTSCCSVEADAECQYLGSDWEFYASALFFVCLCCCFSVLCGFTEVRRKKKGISFAQAWSVPQAMPILRTWPRRSLSSSDVLPAG 1011
            S+ +C +CCS+E + +C  + S+W+FYAS LFF+CLCCCF+ LCG TEVRRKKKGISFAQAWSVPQAMPILRTWPRRS SSSD+  AG
Sbjct:   73 SDVSCDTCCSIE-NLDCTKVDSEWDFYASTLFFICLCCCFTALCGLTEVRRKKKGISFAQAWSVPQAMPILRTWPRRSASSSDMSQAG 159
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig112.774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JAQ4_9PHAE1.860e-3571.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig112contigS-dermatodea_contig112:1568..2580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1015
Cds size543
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924191.515609-UTR-S-dermatodea_contig112:1567..20371622924191.515609-UTR-S-dermatodea_contig112:1567..2037Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig112 1568..2037 +
1694079081.125893-UTR-S-dermatodea_contig112:1567..20371694079081.125893-UTR-S-dermatodea_contig112:1567..2037Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig112 1568..2037 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924191.5277305-CDS-S-dermatodea_contig112:2037..25801622924191.5277305-CDS-S-dermatodea_contig112:2037..2580Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig112 2038..2580 +
1694079081.137137-CDS-S-dermatodea_contig112:2037..25801694079081.137137-CDS-S-dermatodea_contig112:2037..2580Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig112 2038..2580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig112.774.1prot_S-dermatodea_contig112.774.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig112 2038..2580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig112.774.1

>prot_S-dermatodea_contig112.774.1 ID=prot_S-dermatodea_contig112.774.1|Name=mRNA_S-dermatodea_contig112.774.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=181bp
MRYNQIRQNNFFGEYRIQFEQGGARPPSTILLYSCIIILVPPFCFGHSRF
CRMKNAGRARTNVLQHSHLNRPDPFFPAAPSLCPPRTDLTASQQRHLHQL
LLGRGRRGVPVPRVRLGVLRVGALLRVPLLLLLRAVRIHGSKAKEEGHLV
RAGVVRPAGDADPPHVAQEVAVVVGRPSRGR
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mRNA from alignment at S-dermatodea_contig112:1568..2580+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig112.774.1 ID=mRNA_S-dermatodea_contig112.774.1|Name=mRNA_S-dermatodea_contig112.774.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1013bp|location=Sequence derived from alignment at S-dermatodea_contig112:1568..2580+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CACACTACTGCTGGAGTGTCGCTCCCTGTACGTGCAGTGTGCCTTCTCAC
GGCTTGGAGACTAATAGTCGGAGCTTCTCGCCTACTATCGGTGGCTCAAG
TGGGCGATTTACACATCGCCGTGTACCCGCGACCAAGCAGGCAGCAAAGC
CCTTGTTGTGCCCGGCATGGGGCACTTTGTTCCGGTGGATTTGACGCACT
ACAGCGCTTGCACGACAACGCACACTGACTGATGCTCAGGCCGACTCCAC
CTACAACATACTGCATGTCTCAAGATGCTAAGTTTCATGTTAGTCATAGT
CACGCTCTTTCGCCGTCATCACCGTCTTTCGGCATGGTGATTGGCTTGCG
CTATGCAATGCGCCATGCAATTTATCCCGCTCGGTGGAAAAAACGACCAA
TCAGCGTGTTTTGCAAATTTGCCCTACCCAAAAAACTACCGCCTTTCATA
CAAGTGCAAGTCCTCGGCGAATGCGATACAACCAGATTCGTCAAAACAAC
TTCTTTGGCGAATACCGAATACAATTTGAACAAGGAGGGGCACGACCTCC
GTCCACCATACTCTTATATTCTTGTATTATTATTTTAGTGCCCCCTTTCT
GCTTCGGACACTCCCGCTTCTGTCGAATGAAAAACGCGGGCCGCGCACGT
ACGAACGTCCTACAGCATTCGCACTTAAATCGACCCGACCCATTTTTTCC
TGCCGCGCCCTCCCTTTGTCCACCCCGCACCGACTTGACGGCCTCGCAGC
AACGCCACCTGCACCAGCTGCTGCTCGGTAGAGGCCGACGCGGAGTGCCA
GTACCTCGGGTCCGACTGGGAGTTTTACGCGTCGGCGCTCTTCTTCGTGT
GCCTCTGCTGCTGCTTCTCCGTGCTGTGCGGATTCACGGAAGTAAGGCGA
AAGAAGAAGGGCATCTCGTTCGCGCAGGCGTGGTCCGTCCCGCAGGCGAT
GCCGATCCTCCGCACGTGGCCCAGGAGGTCGCTGTCGTCGTCGGACGTCC
TTCCCGCGGGCGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig112:1568..2580+

>mRNA_S-dermatodea_contig112.774.1 ID=mRNA_S-dermatodea_contig112.774.1|Name=mRNA_S-dermatodea_contig112.774.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1086bp|location=Sequence derived from alignment at S-dermatodea_contig112:1568..2580+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGATACAACCAGATTCGTCAAAACAACTTCTTTGGCGAATACCGAAT
ACAATTTGAACAAGGAGGGGCACGACCTCCGTCCACCATACTCTTATATT
CTTGTATTATTATTTTAGTGCCCCCTTTCTGCTTCGGACACTCCCGCTTC
TGTCGAATGAAAAACGCGGGCCGCGCACGTACGAACGTCCTACAGCATTC
GCACTTAAATCGACCCGACCCATTTTTTCCTGCCGCGCCCTCCCTTTGTC
CACCCCGCACCGACTTGACGGCCTCGCAGCAACGCCACCTGCACCAGCTG
CTGCTCGGTAGAGGCCGACGCGGAGTGCCAGTACCTCGGGTCCGACTGGG
AGTTTTACGCGTCGGCGCTCTTCTTCGTGTGCCTCTGCTGCTGCTTCTCC
GTGCTGTGCGGATTCACGGAAGTAAGGCGAAAGAAGAAGGGCATCTCGTT
CGCGCAGGCGTGGTCCGTCCCGCAGGCGATGCCGATCCTCCGCACGTGGC
CCAGGAGGTCGCTGTCGTCGTCGGACGTCCTTCCCGCGGGCGAATGCGAT
ACAACCAGATTCGTCAAAACAACTTCTTTGGCGAATACCGAATACAATTT
GAACAAGGAGGGGCACGACCTCCGTCCACCATACTCTTATATTCTTGTAT
TATTATTTTAGTGCCCCCTTTCTGCTTCGGACACTCCCGCTTCTGTCGAA
TGAAAAACGCGGGCCGCGCACGTACGAACGTCCTACAGCATTCGCACTTA
AATCGACCCGACCCATTTTTTCCTGCCGCGCCCTCCCTTTGTCCACCCCG
CACCGACTTGACGGCCTCGCAGCAACGCCACCTGCACCAGCTGCTGCTCG
GTAGAGGCCGACGCGGAGTGCCAGTACCTCGGGTCCGACTGGGAGTTTTA
CGCGTCGGCGCTCTTCTTCGTGTGCCTCTGCTGCTGCTTCTCCGTGCTGT
GCGGATTCACGGAAGTAAGGCGAAAGAAGAAGGGCATCTCGTTCGCGCAG
GCGTGGTCCGTCCCGCAGGCGATGCCGATCCTCCGCACGTGGCCCAGGAG
GTCGCTGTCGTCGTCGGACGTCCTTCCCGCGGGCGA
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