mRNA_S-dermatodea_contig11115.730.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11115.730.1
Unique NamemRNA_S-dermatodea_contig11115.730.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig11115.730.1 vs. uniprot
Match: D8LBR3_ECTSI (Sas10 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR3_ECTSI)

HSP 1 Score: 323 bits (828), Expect = 1.320e-100
Identity = 229/330 (69.39%), Postives = 246/330 (74.55%), Query Frame = 1 
Query:  142 GGR-SSGPESDPDNEHLFTDVDRFHMQKDKITFDG---DDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSELPELPEHVRRAAMEAASXXXXXXXXGEGGG--KFAAG-WGKSRSSYYNADTADLEIGQEFEDAEAEEEAALELQRASYKRLDPADYGEEEDG------------EERREGTEARGKXXXXXXAGKRGGVT----AQGAALLAMKSDLEQIALGDGGEVETSVVKRDTSKLSRRDKLELVLSEAPELPSLLAEVRAQLETLTGTIQPLVSNVTADLGASKDGLVYLRTRQQLLLAYCMNVCFYMVLK 1062
            GGR SS PE +P+NE L+TDVDRFHMQ+DKI F G   D                      XXXXXXXXXXXXXXXXXX   SELPELPEHVRRAAM+A+S  XXXXXX       KF AG WGK+RSSYYNADTADLEIGQEFEDAEAEEEAALELQRASYKRLDPADYGEEE              ++ R G   +GK        +R G +    AQG AL AMKSDLEQIALG GGEVETSVVKRDTSKLSRRDKLELVLSEAPELP+LL EVRAQL TLT ++QPLVSNVTA++GASKDGLVYLRTRQQLLLAYCMNVCFYMVLK
Sbjct:   27 GGRASSRPEGNPENEELYTDVDRFHMQQDKIKFGGRAGDSSSDSDDLDGSEEEEGVMTLDGXXXXXXXXXXXXXXXXXXSDASELPELPEHVRRAAMQASSDDXXXXXXXXXXXXXKFGAGGWGKNRSSYYNADTADLEIGQEFEDAEAEEEAALELQRASYKRLDPADYGEEEXXXXXXXXXXXXXXKQERGG---KGKGNTAAKRRERDGTSSAAGAQGEALRAMKSDLEQIALGAGGEVETSVVKRDTSKLSRRDKLELVLSEAPELPALLGEVRAQLGTLTESVQPLVSNVTAEIGASKDGLVYLRTRQQLLLAYCMNVCFYMVLK 353
[Close]
BLAST of mRNA_S-dermatodea_contig11115.730.1 vs. uniprot
Match: A0A6H5KFL1_9PHAE (Sas10 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL1_9PHAE)

HSP 1 Score: 258 bits (659), Expect = 9.440e-77
Identity = 157/205 (76.59%), Postives = 165/205 (80.49%), Query Frame = 1 
Query:  496 SRSSYYNADTADLEIGQEFEDAEAEEEAALELQRASYKRLDPADYGEEEDGEE---------RREGTEARGKXXXXXXAGKR-------GGVTAQGAALLAMKSDLEQIALGDGGEVETSVVKRDTSKLSRRDKLELVLSEAPELPSLLAEVRAQLETLTGTIQPLVSNVTADLGASKDGLVYLRTRQQLLLAYCMNVCFYMVLK 1062
            +RSSYYNADTADLEIGQEFEDAEAEEEAALELQRASYKRLDPADYGEEE             ++E       XXXXX   KR           AQG AL AMKSDLEQIALG GGEVETSVVKRDTSKLSRRDKLELVLSEAPELP+LL EVRAQL TLT ++QPLVSNVTA++GASKDGLVYLRTRQQLLLAYCMNVCFYMVLK
Sbjct:   45 TRSSYYNADTADLEIGQEFEDAEAEEEAALELQRASYKRLDPADYGEEEXXXXXXXXXXXTAKQEXXXXXXXXXXXXTTAKRXXXXGTSSAAGAQGEALRAMKSDLEQIALGAGGEVETSVVKRDTSKLSRRDKLELVLSEAPELPALLGEVRAQLGTLTESVQPLVSNVTAEIGASKDGLVYLRTRQQLLLAYCMNVCFYMVLK 249
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BLAST of mRNA_S-dermatodea_contig11115.730.1 vs. uniprot
Match: A0A7S1U511_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U511_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.340e-19
Identity = 76/197 (38.58%), Postives = 107/197 (54.31%), Query Frame = 1 
Query:  484 GWGKSRSSYYNADTADLEIGQEFEDAEAEEEAALELQRASYKRLDPAD---YGEEEDGEERREGTEARGKXXXXXXAGKRGGVTAQGAALLAMKSDLEQIALGDGGEVETSVVKRDTSKLSRRDKLELVLSEAPELPSLLAEVRAQLETLTGTIQPLVSNVTADL-GASKDGLVYLRTRQQLLLAYCMNVCFYMVLK 1062
            GWG+ +S YY+ DTADLEIGQ+FEDAE EEEAA E++ A  K L+ A+   +G+   G                  A K+GG   +GA   A        A  D  +VE + V RD + LS+++KL++++S APEL  LLAE R +L  L     PL   V A + GAS  G  +   +   L  Y +NV +Y++L+
Sbjct:  119 GWGRRKSDYYHGDTADLEIGQDFEDAEEEEEAAREMRSAELKGLEGAEDSFFGDLLSG-------------APAAPALKKGGKK-KGAKAKAK-------AAADPDDVEIAHVSRDLAGLSKKEKLQILMSRAPELLPLLAEARERLVELRDVAVPLAGRVRAGVAGASGLGETWCNVKAGTLANYIINVVYYLLLR 294
[Close]
BLAST of mRNA_S-dermatodea_contig11115.730.1 vs. uniprot
Match: A0A7S1C7S7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C7S7_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 4.200e-19
Identity = 77/200 (38.50%), Postives = 111/200 (55.50%), Query Frame = 1 
Query:  478 AAGWGKSRSSYYNADTADLEIGQEFEDAEAEE----EAALELQRASYKRLDPADYGEEEDGEERREGTEARGKXXXXXXAGKRGGVTAQGAALL-AMKSDLEQIALGDGGEVETSVVKRDTSKLSRRDKLELVLSEAPELPSLLAEVRAQLETLTGTIQPLVSNVTADLGASKDGLVYLRTRQQLLLAYCMNVCFYMVLK 1062
            A  WGK R ++Y+ADT  LE G E  D EA      E A+ LQR   + +D  D+ +   G+  + G EA+ K       GK+G   A  A +L AM SDL  I+      V    V +D S L+  DKL++VLS++PEL SLL + RA +E +   +QPL++ V +    +  G+ YL  + QLLL+Y  N+ FY++LK
Sbjct:  145 AIAWGKDRRTFYDADTGHLE-GDESGDEEAXXXXXXEEAMRLQRKQLEMVDEDDF-DASLGDVVKAG-EAKKK-------GKKGKAAASDATMLQAMSSDLTAISSALDSRVAVERVAKDASALTDEDKLQIVLSDSPELVSLLGDFRATIEQVRSMLQPLLARVRSGELPTSRGINYLEVKVQLLLSYVTNLTFYLLLK 334
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BLAST of mRNA_S-dermatodea_contig11115.730.1 vs. uniprot
Match: A0A0P1A9L8_PLAHL (Disrupter of silencing SAS10 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A9L8_PLAHL)

HSP 1 Score: 98.2 bits (243), Expect = 7.160e-19
Identity = 74/204 (36.27%), Postives = 109/204 (53.43%), Query Frame = 1 
Query:  487 WGKSRSSYYNADTADLEIGQEFEDAEAEEEAALELQRASYKRLDPADYG-------EEEDGEERREGTEARGKXXXXXXAGKRGGVTAQGAALL-AMKSDLEQIALGDGGEVET-SVVKRDTSKLSRRDKLELVLSEAPELPSLLAEVRAQLETLTGTIQPLVSNVTADLGASKD---GLVYLRTRQQLLLAYCMNVCFYMVLK 1062
            WGK R ++Y+ADTA+ E+  + E A+ EE+AALELQR   + +D  D+G       E+ +GEE  +  E                +      L+ A  +D+ Q+A    G VET   V +D SK++++DKLE+V + APEL  LLAE+ +  + L   + P V  +      S     GL YL TRQ LLL Y  N+ FY++L+
Sbjct:  109 WGKKRKTFYSADTAEYELESDEEIAQDEEDAALELQRKQAEMMDDEDFGIDGPEADEDVEGEEEEDNNE----------------IPVDDEDLVKAQLADIAQVADNGIGGVETIEQVPKDFSKMTKKDKLEIVNNSAPELLGLLAELESSTKELEEVVTPAVVKLRPVRRKSHQLQMGLRYLMTRQNLLLNYSTNISFYLLLR 296
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BLAST of mRNA_S-dermatodea_contig11115.730.1 vs. uniprot
Match: A0A1Y1INM2_KLENI (Sas10/Utp3/C1D family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1INM2_KLENI)

HSP 1 Score: 97.8 bits (242), Expect = 1.420e-18
Identity = 70/192 (36.46%), Postives = 101/192 (52.60%), Query Frame = 1 
Query:  487 WGKSRSSYYNADTADLEIGQEFEDAEAEEEAALELQRASYKRLDPADYGEEEDGEERREGTEARGKXXXXXXAGKRGGVTAQGAALLAMKSDLEQIALGDGGEVETSVVKRDTSKLSRRDKLELVLSEAPELPSLLAEVRAQLETLTGTIQPLVSNVTADLGASKDGLVYLRTRQQLLLAYCMNVCFYMVLK 1062
            WGKS+  YY  D  DLE+  + E         LE QR   + L P DY +E + E  +E  +A             G  T + AA  A ++ +++    +G  VE   VK+D   L+R +KL  V+SEAPEL SLL E+R  L  +T  +QP++  V     A++DG+ YL  +  LLL YC N+ FY++LK
Sbjct:  165 WGKSKKVYYGGDNVDLELTDDEEAPAEXXXMVLEQQRKLAQSLRPEDYDQESEDESDKETPDA-------------GEETLEAAANRA-ENGVKKGVKENGVTVEE--VKKDLDSLTREEKLAAVMSEAPELVSLLGELREGLREITEKVQPVLRAVKDGKYATQDGISYLEAKHLLLLTYCQNIVFYLLLK 340
[Close]
BLAST of mRNA_S-dermatodea_contig11115.730.1 vs. uniprot
Match: A0A3M6VII6_9STRA (Sas10 domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VII6_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 4.340e-18
Identity = 73/201 (36.32%), Postives = 104/201 (51.74%), Query Frame = 1 
Query:  487 WGKSRSSYYNADTADLEIGQEFEDAEAEEEAALELQRASYKRLDPADYGEE-----EDGEERREGTEARGKXXXXXXAGKRGGVTAQGAALLAMKSDLEQIALGDGGEVET-SVVKRDTSKLSRRDKLELVLSEAPELPSLLAEVRAQLETLTGTIQPLVSNVTADLGASKD---GLVYLRTRQQLLLAYCMNVCFYMVLK 1062
            WGKSR ++Y+ADTA+ E+  + E A+ EEEAALELQR   + ++  D+G +     ED EE  E  EA                           +D+  +A    G  ET   V RD SK+S++DKL++V   APEL  L++E+ +  + L   I P V  +      S+    GL YL TRQ LLL Y  N+ FY++L+
Sbjct:  110 WGKSRKTFYSADTAEYELEYDEEVAKDEEEAALELQRKQAEMMNDEDFGIDAPEAIEDAEEEEEENEAMHVDDEEMVG--------------TQLADIATLADNGTGSAETIEQVHRDFSKMSKKDKLQIVNQSAPELLGLISELESSTKELEEVITPAVLKLRPVRRKSRQLQMGLRYLMTRQNLLLNYSANISFYLLLR 296
[Close]
BLAST of mRNA_S-dermatodea_contig11115.730.1 vs. uniprot
Match: A0A2P4X5M6_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X5M6_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 7.010e-18
Identity = 75/197 (38.07%), Postives = 111/197 (56.35%), Query Frame = 1 
Query:  487 WGKSRSSYYNADTADLEIGQEFEDAEAEEEAALELQRASYKRLDPADYGEEEDGEERREGTEARGKXXXXXXAGKRGGVTAQGAALLAMK-SDLEQIALGDGGEVET-SVVKRDTSKLSRRDKLELVLSEAPELPSLLAEVRAQLETLTGTIQPLVSNVTADLGASKD---GLVYLRTRQQLLLAYCMNVCFYMVLK 1062
            WGK+R ++Y+ADTA+ E+  + E A+ EEEAALELQR   + +D  D+G +E         EA G+XXXXXX             L+  + +D+  +A    G  ET   V +D SK+S++DKL++V   APEL  L++E+ +  + L   + P V  +      S+    GL YL TRQ LLL Y  N+ FY++L+
Sbjct:  105 WGKNRKTFYSADTAEYELESDEEIAKDEEEAALELQRKQAEMMDDEDFGIDE--------PEADGEXXXXXXXXXXXAAPVDDEELVGEQLADIATLADNGAGGAETVEQVHKDFSKMSKKDKLQIVNQSAPELLGLVSELESTTKELEEVVTPAVLKLRPVRRKSRQLQMGLRYLMTRQNLLLNYSANISFYLLLR 293
[Close]
BLAST of mRNA_S-dermatodea_contig11115.730.1 vs. uniprot
Match: K3WST8_GLOUD (Sas10 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WST8_GLOUD)

HSP 1 Score: 94.7 bits (234), Expect = 1.050e-17
Identity = 68/201 (33.83%), Postives = 107/201 (53.23%), Query Frame = 1 
Query:  487 WGKSRSSYYNADTADLEIGQEFEDAEAEEEAALELQRASYKRLDPADYG------EEEDGEERREGTEARGKXXXXXXAGKRGGVTAQGAALLAMKSDLEQIALGDGGEVETSVVKRDTSKLSRRDKLELVLSEAPELPSLLAEVRAQLETLTGTIQPLV---SNVTADLGASKDGLVYLRTRQQLLLAYCMNVCFYMVLK 1062
            WG S+ ++Y+ADTA+ E+  + E A+ EE+AALELQR   + +D  D+G      E++D +E+ +      +                GA L  +   ++Q   GDG  +E   V +D SK+S++DKL++V   APEL  L+AE+   ++ L   I P +    ++         GL YL TRQ L+L Y  N+ FYM+L+
Sbjct:  110 WGNSKKNFYSADTAEFELDSDEEAAKDEEDAALELQRKQAEMMDEEDFGFGDDVDEDDDADEQSDDVPVDDEDLV-------------GAQLADISMLVDQ---GDGSSIEQ--VHKDFSKMSKKDKLQIVNQSAPELLGLMAELENTMKELKEVITPAILKLKDICRKTKGYNTGLQYLVTRQNLMLNYVSNISFYMLLR 292
[Close]
BLAST of mRNA_S-dermatodea_contig11115.730.1 vs. uniprot
Match: H3GH43_PHYRM (Sas10 domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=H3GH43_PHYRM)

HSP 1 Score: 92.4 bits (228), Expect = 3.980e-17
Identity = 75/196 (38.27%), Postives = 111/196 (56.63%), Query Frame = 1 
Query:  487 WGKSRSSYYNADTADLEIGQEFEDAEAEEEAALELQRASYKRLDPADYGEEEDGEERREGTEARGKXXXXXXAGKRGGVTAQGAALLAMKSDLEQIALGDGGEVET-SVVKRDTSKLSRRDKLELVLSEAPELPSLLAEVRAQLETLTGTIQPLVSNVTADLGASKD---GLVYLRTRQQLLLAYCMNVCFYMVLK 1062
            WGKSR ++Y+ADTA+ E+  + E A+ EEEAALELQR   + +D  D+G +E         EA G+XXXXXX      V  +   +    +D+  +A    G  ET   V +D SK++++DKL++V   APEL  L++E+ +  + L   + P V  +      S+    GL YL TRQ LLL Y  N+ FY++L+
Sbjct:   18 WGKSRKTFYSADTAEYELESDEEVAKDEEEAALELQRKQAEMMDDEDFGIDE--------PEADGEXXXXXXXXXAAPVDDE-ELVGEQLADIATLADNGAGGAETVEQVHKDFSKMTKKDKLQIVNQSAPELLGLMSELESTTKELEEVVTPAVLKLRPVRRKSRQLQMGLRYLMTRQNLLLNYSANISFYLLLR 204
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11115.730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBR3_ECTSI1.320e-10069.39Sas10 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KFL1_9PHAE9.440e-7776.59Sas10 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S1U511_9STRA2.340e-1938.58Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A7S1C7S7_9STRA4.200e-1938.50Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A0P1A9L8_PLAHL7.160e-1936.27Disrupter of silencing SAS10 n=1 Tax=Plasmopara ha... [more]
A0A1Y1INM2_KLENI1.420e-1836.46Sas10/Utp3/C1D family protein n=1 Tax=Klebsormidiu... [more]
A0A3M6VII6_9STRA4.340e-1836.32Sas10 domain-containing protein n=1 Tax=Peronospor... [more]
A0A2P4X5M6_9STRA7.010e-1838.07Uncharacterized protein (Fragment) n=2 Tax=Phytoph... [more]
K3WST8_GLOUD1.050e-1733.83Sas10 domain-containing protein n=1 Tax=Globispora... [more]
H3GH43_PHYRM3.980e-1738.27Sas10 domain-containing protein n=9 Tax=Phytophtho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11115contigS-dermatodea_contig11115:3689..7535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score325.9
Seed ortholog evalue2.4e-86
Seed eggNOG ortholog2880.D8LBR3
Preferred nameUTP3
KEGG koko:K14765,ko:K14767
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048513,GO:0048731,GO:0048856,GO:0060322,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG3118@1,KOG3118@2759
Ec32 ortholog descriptionSas10 C-terminal domain
Ec32 orthologEc-27_003010.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Exons6
Model size1073
Cds size1071
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11115.730.1prot_S-dermatodea_contig11115.730.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11115 3689..7535 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924188.1399205-CDS-S-dermatodea_contig11115:3688..38541622924188.1399205-CDS-S-dermatodea_contig11115:3688..3854Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11115 3689..3854 +
1694079078.6829762-CDS-S-dermatodea_contig11115:3688..38541694079078.6829762-CDS-S-dermatodea_contig11115:3688..3854Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11115 3689..3854 +
1622924188.1516755-CDS-S-dermatodea_contig11115:5451..55521622924188.1516755-CDS-S-dermatodea_contig11115:5451..5552Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11115 5452..5552 +
1694079078.6984448-CDS-S-dermatodea_contig11115:5451..55521694079078.6984448-CDS-S-dermatodea_contig11115:5451..5552Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11115 5452..5552 +
1622924188.1609347-CDS-S-dermatodea_contig11115:5981..61041622924188.1609347-CDS-S-dermatodea_contig11115:5981..6104Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11115 5982..6104 +
1694079078.7096918-CDS-S-dermatodea_contig11115:5981..61041694079078.7096918-CDS-S-dermatodea_contig11115:5981..6104Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11115 5982..6104 +
1622924188.171521-CDS-S-dermatodea_contig11115:6362..64721622924188.171521-CDS-S-dermatodea_contig11115:6362..6472Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11115 6363..6472 +
1694079078.7227614-CDS-S-dermatodea_contig11115:6362..64721694079078.7227614-CDS-S-dermatodea_contig11115:6362..6472Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11115 6363..6472 +
1622924188.1862366-CDS-S-dermatodea_contig11115:6662..69571622924188.1862366-CDS-S-dermatodea_contig11115:6662..6957Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11115 6663..6957 +
1694079078.7322161-CDS-S-dermatodea_contig11115:6662..69571694079078.7322161-CDS-S-dermatodea_contig11115:6662..6957Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11115 6663..6957 +
1622924188.1947198-CDS-S-dermatodea_contig11115:7259..75351622924188.1947198-CDS-S-dermatodea_contig11115:7259..7535Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11115 7260..7535 +
1694079078.7481613-CDS-S-dermatodea_contig11115:7259..75351694079078.7481613-CDS-S-dermatodea_contig11115:7259..7535Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11115 7260..7535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11115.730.1

>prot_S-dermatodea_contig11115.730.1 ID=prot_S-dermatodea_contig11115.730.1|Name=mRNA_S-dermatodea_contig11115.730.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=357bp
KEKYTAVHVRERRMAAPRGRGARGRGRGRGRGRSGGRGPNSKGAQRRGGR
SSGPESDPDNEHLFTDVDRFHMQKDKITFDGDDSDSNDSDESEQEEAVME
LKGTGGDGDSDSSGEDDDSEDDSDGSELPELPEHVRRAAMEAASSDDDSD
DEGEGGGKFAAGWGKSRSSYYNADTADLEIGQEFEDAEAEEEAALELQRA
SYKRLDPADYGEEEDGEERREGTEARGKGKGKGKAGKRGGVTAQGAALLA
MKSDLEQIALGDGGEVETSVVKRDTSKLSRRDKLELVLSEAPELPSLLAE
VRAQLETLTGTIQPLVSNVTADLGASKDGLVYLRTRQQLLLAYCMNVCFY
MVLKVC*
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mRNA from alignment at S-dermatodea_contig11115:3689..7535+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11115.730.1 ID=mRNA_S-dermatodea_contig11115.730.1|Name=mRNA_S-dermatodea_contig11115.730.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3847bp|location=Sequence derived from alignment at S-dermatodea_contig11115:3689..7535+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGAGAAGTACACAGCAGTGCACGTGCGAGAGAGGAGAATGGCGGCGCC
TCGGGGGCGTGGAGCTCGTGGAAGGGGAAGAGGAAGAGGGAGAGGTCGAA
GTGGCGGGCGAGGACCCAACAGCAAGGGAGCGCAGCGTCGAGGAGGGCGT
TCGTCGGGACCAGAGAGTGAGTGGCCGTACTGGAGTCTTGAGCAACCTGG
GCTGCGATGTGATCCAGGCACAGAGGCCACACATACTTGTACGAGCACCA
CGGTAGTATACTACGCTGTGTTGGGAGAAGTTGTCCAGTAGCTCCGGTAC
AGGGCTTAGCTCGTCCGTGCTTGCTTTGCACGCCGTGTCCCTCGACCATG
TTGTTTTGTGATGATGTTTGCAGCGTCTGTCATCCTTGCTTGGCTCGTGA
ACGATGAGCAACCGTGGCTGGCCGACGCCTGTTGCATGTTTTGTATGTAC
AGAGTATACTACAGCAGTGTTGCAGCTCTACAAGTATGTTTGCTAATCAT
ATCAGTTTTGTACACAGAGTAGACCCACAGGCAGGGTGCGGCAAGGTGGA
CTCGAGGACCGCGCCGTATCGCAGCCAAAAGACGACGAGTTCCATGCCGT
GCTTCCTATAGGACTAACTCAAGTAGTTGGTGCGACCTCTCGGGGACACT
ATAGTACATGGAGTAATTATAGAGCTACAATAATATCAGCTCTATCTCTC
GTACGAGTATGATACATCATTCCCAAGGAGGAGCTCTACCAGCGTTCATA
CTGTACACACGATTACATGTAGAGTGAACGCGAGACACTCACTCCAGGAG
CGAAACTTCGCTCGTGTGATGAATGGAGCAGCCAATCTCCCGGCAACAGC
GACGTCGAACCACATATACAGTCGCCTCACCAGGGCTACACTAATTATAG
TTGTTGCGGCTGCTGGGCGGACGCGCCCTGCTGGTATTTGTACAACTATT
TCTTGGACGGGATTGAACTACTTGTATAGGGCACGTACAAATCAAGTACT
TGTAGGAGCACCCTCGACATCATGGGTGGATGGAGGTATAGATGAATACA
ACTTCAAGTGACTAAAAGAATGATGGCATGCACTTGACACACCCACAACA
CAAAGGCAGTTAGGTGAGGGGATGTACAAGTACGTGTCTGGAGTCTGGAA
TAGGCAACGGCTCCTCGAGTAAGTCGCCACCCTTCGCTACTGCGGTACAG
ACGGGATATTTATCTCAACGAAATATACTGGAGATGGGAGGCGTCGTGCT
TACACACAGGTTTGTCAAGTTGCTCCGAATCGCCGGCGTCGTGCTTGTGT
CGATCGTGGGCGATATTATACTGGCTGTGAATGCACAACAGGTACAGAAC
AAAGCGGCATGGTCGGCGTTTCTGTCAAAACACGGAGCAAACCGTCGAAC
GAACACCCACAGATAAGAGTATCTTTGTCAGATGAGAGGAGCAAAAAAAA
GTAAAGGCGATGCCGGCGGCCTCGAGAAGAAGATACATAGGCCACCTGCT
CCAATGGCGGCAAGTAGACGAGTCCTCCCGCGGAGCGCGGGGCACCTGCT
CCGCTGCCAGGAACTTTTACTTGTATACCGTCGCCTACGACACCGAATTG
TTCCATTTCACCCCTTGTCCCACACATCCAAAAGGTGGCAAATTGTACGA
TTGTAGAGAACTATAATATATTTAGTGGGGTGCCATAAGTTGACGTTCAG
ACACCAAGGTGCATGTGGAAACTGATATTAGCTTGCCCAATATGTCCATG
ATCTTCGTTGCAGGCGACCCGGACAACGAACACCTATTCACTGATGTGGA
TCGTTTTCACATGCAAAAGGACAAGATCACCTTCGATGGGGACGACAGCG
ACTCCAACGACTCGGTGAGTATTTTGTGCAACTGGAGTGCGCTCCTGTTA
CCGTATCGCCAGCACTGCGACCCCCGGCACAGCATTGCGAACACTTCTGT
AAAACCTAATACTATTAGAGTGCTAGACTGTTGTCTCTCCGCGATTTGTA
CGTTTCGGATTGAAGGCAAAAGTGTATGCAGGCTGCCTTACCACTTAGTG
TCTCACTCGAAGAAACACCCGTGTTTTGATACAATCGGAAGTATCGGGTC
GTGGTTTTGTGGCAATACAGCGGAAGGAAAAAGCGTTCGTTGGTTTGTAC
GTTCTTCGCGATCGGTTTGCGAGCAGCAGAGCACTAAATGCTGAACTGCG
AAACATCCCCGGCCCCAAAAGGCCAGCCTCGGCCCCCCAAAGCTTCAGTT
CGCCTTGTTTGTTACTGTTTTATATACATACCTCTCTCTGTAGGACGAGT
CTGAGCAAGAAGAGGCAGTGATGGAGCTGAAAGGCACGGGCGGCGACGGT
GACAGCGATTCCAGCGGCGAAGACGACGACTCGGAGGACGACTCTGACGG
GTCTGAACTGCCGGAGGTCAGTGGCTACCTGCGCACAGCACGGGACCTTG
TTGAAACCCGTCGATAGGGTTGTTCGCGGCCCAACAGCCTCCAGAGCTTT
CAGTGCCGCTCTACAGCAGGCACGCAGAACTCGCGTGCGAATCTTGGCGA
CCACACAGAATATGCGGGTGAATTGAAGGCTCTTCCGTCAGGTTCGTGTT
GGTGTTTGTTTGCTACAGCAACGGCTCTCCGTGATATCCGTGTCTTGCGT
TGTCCCGGTGTCTCTGCCTGGCAGTTGCCGGAGCACGTGCGACGGGCTGC
GATGGAGGCCGCCTCTAGTGATGATGACAGCGACGATGAGGGAGAAGGCG
GTGGCAAGTTTGCCGCGGGCTGGGGAAAGAGCAGGTGTGTGGCGTGGCGG
GCGTAAACACTCTGCGAGAACAAGTACTCGGTACGGCGAGATGTGCACGA
ACACCGCCATGCATACGCATAGCAAACTTGAGCCAGGTGTACGGTGGTCG
ATGTACGCATGCGTAGCTCCGTGGTAACATGTGCGGTATGGACGCGTGAC
GCTAATGCTTTGCTGCCGCTGCAGGTCCTCGTACTACAACGCCGACACGG
CGGACCTGGAGATCGGACAAGAGTTTGAGGATGCCGAGGCAGAGGAAGAG
GCCGCCCTGGAGTTGCAGAGAGCGAGCTACAAGCGGCTTGACCCGGCAGA
CTACGGAGAGGAGGAGGATGGCGAGGAACGCAGGGAGGGGACGGAAGCTC
GAGGAAAAGGAAAGGGGAAAGGGAAAGCCGGGAAACGTGGTGGGGTAACC
GCCCAAGGAGCAGCGCTGTTGGCGATGAAGAGTGATCTCGAGCAGATCGC
GCTTGGGGATGGCGGAGAGGTGACGAAAAAACATGATCGGCTGTGTTGGT
GTCATCCACGCGGGTTTCGTCTGAAGTTTGTTGCCCTACTGTGTTACAAA
AGCCACGTTTTGAACCTCGCCCTTCTCGCTTAGATTTAGCCTGTGAATTT
CTGCCTCTTCAATACGCTCGTCATTCCCCCTCACCTATTGCCGACGCAGC
GGGATACGCGTATTGGCGCCGAACTCGAGCACATCTCCGACGGTTTCTGT
TTCCGTGGAATACGACCGCCCCAACCCCCCCCTCCCTCCCCCGCCCTTTG
GGTGCGAAAAACGTGAAACAGGTGGAAACCTCCGTGGTGAAGAGAGATAC
TTCCAAGCTCAGCCGTCGTGACAAACTGGAGCTCGTCCTGTCCGAGGCGC
CGGAGCTGCCGTCTCTCTTGGCGGAGGTGCGGGCGCAGCTGGAGACGCTC
ACGGGCACGATTCAGCCGCTTGTGTCCAACGTGACGGCTGACCTAGGCGC
AAGCAAGGACGGGCTCGTGTACCTGCGAACCCGTCAGCAGCTGCTTCTGG
CGTACTGCATGAACGTGTGCTTCTACATGGTCCTCAAGGTATGTTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11115:3689..7535+

>mRNA_S-dermatodea_contig11115.730.1 ID=mRNA_S-dermatodea_contig11115.730.1|Name=mRNA_S-dermatodea_contig11115.730.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2142bp|location=Sequence derived from alignment at S-dermatodea_contig11115:3689..7535+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGAGAAGTACACAGCAGTGCACGTGCGAGAGAGGAGAATGGCGGCGCC
TCGGGGGCGTGGAGCTCGTGGAAGGGGAAGAGGAAGAGGGAGAGGTCGAA
GTGGCGGGCGAGGACCCAACAGCAAGGGAGCGCAGCGTCGAGGAGGGCGT
TCGTCGGGACCAGAGAAAGGAGAAGTACACAGCAGTGCACGTGCGAGAGA
GGAGAATGGCGGCGCCTCGGGGGCGTGGAGCTCGTGGAAGGGGAAGAGGA
AGAGGGAGAGGTCGAAGTGGCGGGCGAGGACCCAACAGCAAGGGAGCGCA
GCGTCGAGGAGGGCGTTCGTCGGGACCAGAGAGCGACCCGGACAACGAAC
ACCTATTCACTGATGTGGATCGTTTTCACATGCAAAAGGACAAGATCACC
TTCGATGGGGACGACAGCGACTCCAACGACTCGGCGACCCGGACAACGAA
CACCTATTCACTGATGTGGATCGTTTTCACATGCAAAAGGACAAGATCAC
CTTCGATGGGGACGACAGCGACTCCAACGACTCGGACGAGTCTGAGCAAG
AAGAGGCAGTGATGGAGCTGAAAGGCACGGGCGGCGACGGTGACAGCGAT
TCCAGCGGCGAAGACGACGACTCGGAGGACGACTCTGACGGGTCTGAACT
GCCGGAGGACGAGTCTGAGCAAGAAGAGGCAGTGATGGAGCTGAAAGGCA
CGGGCGGCGACGGTGACAGCGATTCCAGCGGCGAAGACGACGACTCGGAG
GACGACTCTGACGGGTCTGAACTGCCGGAGTTGCCGGAGCACGTGCGACG
GGCTGCGATGGAGGCCGCCTCTAGTGATGATGACAGCGACGATGAGGGAG
AAGGCGGTGGCAAGTTTGCCGCGGGCTGGGGAAAGAGCAGTTGCCGGAGC
ACGTGCGACGGGCTGCGATGGAGGCCGCCTCTAGTGATGATGACAGCGAC
GATGAGGGAGAAGGCGGTGGCAAGTTTGCCGCGGGCTGGGGAAAGAGCAG
GTCCTCGTACTACAACGCCGACACGGCGGACCTGGAGATCGGACAAGAGT
TTGAGGATGCCGAGGCAGAGGAAGAGGCCGCCCTGGAGTTGCAGAGAGCG
AGCTACAAGCGGCTTGACCCGGCAGACTACGGAGAGGAGGAGGATGGCGA
GGAACGCAGGGAGGGGACGGAAGCTCGAGGAAAAGGAAAGGGGAAAGGGA
AAGCCGGGAAACGTGGTGGGGTAACCGCCCAAGGAGCAGCGCTGTTGGCG
ATGAAGAGTGATCTCGAGCAGATCGCGCTTGGGGATGGCGGAGAGGTCCT
CGTACTACAACGCCGACACGGCGGACCTGGAGATCGGACAAGAGTTTGAG
GATGCCGAGGCAGAGGAAGAGGCCGCCCTGGAGTTGCAGAGAGCGAGCTA
CAAGCGGCTTGACCCGGCAGACTACGGAGAGGAGGAGGATGGCGAGGAAC
GCAGGGAGGGGACGGAAGCTCGAGGAAAAGGAAAGGGGAAAGGGAAAGCC
GGGAAACGTGGTGGGGTAACCGCCCAAGGAGCAGCGCTGTTGGCGATGAA
GAGTGATCTCGAGCAGATCGCGCTTGGGGATGGCGGAGAGGTGGAAACCT
CCGTGGTGAAGAGAGATACTTCCAAGCTCAGCCGTCGTGACAAACTGGAG
CTCGTCCTGTCCGAGGCGCCGGAGCTGCCGTCTCTCTTGGCGGAGGTGCG
GGCGCAGCTGGAGACGCTCACGGGCACGATTCAGCCGCTTGTGTCCAACG
TGACGGCTGACCTAGGCGCAAGCAAGGACGGGCTCGTGTACCTGCGAACC
CGTCAGCAGCTGCTTCTGGCGTACTGCATGAACGTGTGCTTCTACATGGT
CCTCAAGGTATGTTGAGTGGAAACCTCCGTGGTGAAGAGAGATACTTCCA
AGCTCAGCCGTCGTGACAAACTGGAGCTCGTCCTGTCCGAGGCGCCGGAG
CTGCCGTCTCTCTTGGCGGAGGTGCGGGCGCAGCTGGAGACGCTCACGGG
CACGATTCAGCCGCTTGTGTCCAACGTGACGGCTGACCTAGGCGCAAGCA
AGGACGGGCTCGTGTACCTGCGAACCCGTCAGCAGCTGCTTCTGGCGTAC
TGCATGAACGTGTGCTTCTACATGGTCCTCAAGGTATGTTGA
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