mRNA_S-dermatodea_contig10099.66.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10099.66.1
Unique NamemRNA_S-dermatodea_contig10099.66.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig10099.66.1 vs. uniprot
Match: A0A6H5JNL8_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNL8_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 2.980e-67
Identity = 102/132 (77.27%), Postives = 113/132 (85.61%), Query Frame = 1
Query:    1 QVECFEDNPGILMYGNMCVVYTTGVWLLFASYLELPVSTTHSTVGGIVGMAMAYRGADCVVWYEEADHFPYLSGVSAIVASWVLSPVISGVIAVGLFFAVRNLVLRREDAHKYAISIFPLLVTFTIAVNGKR 396
            ++ECF DNPGILMYGNMCVVYTTG+WLL ASY ELPVSTTHST+GGIVGMAM YRGADCVVWYEEAD FPYL G+SAIVASWVLSPV+S VIAV LF  +R  VLR  D+H+ AI +FP LVT TIAVNG +
Sbjct:    4 KIECFTDNPGILMYGNMCVVYTTGIWLLLASYFELPVSTTHSTIGGIVGMAMTYRGADCVVWYEEADLFPYLKGISAIVASWVLSPVLSAVIAVALFLFMRTFVLRSPDSHQRAIVVFPFLVTATIAVNGNK 135          
BLAST of mRNA_S-dermatodea_contig10099.66.1 vs. uniprot
Match: A0A6H5JNE7_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE7_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 9.470e-66
Identity = 103/128 (80.47%), Postives = 110/128 (85.94%), Query Frame = 1
Query:    4 VECFEDNPGILMYGNMCVVYTTGVWLLFASYLELPVSTTHSTVGGIVGMAMAYRGADCVVWYEEADHFPYLSGVSAIVASWVLSPVISGVIAVGLFFAVRNLVLRREDAHKYAISIFPLLVTFTIAVN 387
            +ECFEDNPGILMYGNMCVVYTTG+WLL AS+ ELPVSTTHSTVGGIVGMAM YRGADCVVWYEEAD FPYL GVSAIVASW LSP+ S VIAV LF  +R  VLR  DAHK AI++FP LVT TIAVN
Sbjct:   89 IECFEDNPGILMYGNMCVVYTTGIWLLLASFFELPVSTTHSTVGGIVGMAMTYRGADCVVWYEEADLFPYLKGVSAIVASWALSPLFSAVIAVALFLFMRTFVLRSPDAHKRAINVFPFLVTATIAVN 216          
BLAST of mRNA_S-dermatodea_contig10099.66.1 vs. uniprot
Match: D7G0K9_ECTSI (Phosphate transporter n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K9_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 6.460e-63
Identity = 99/127 (77.95%), Postives = 108/127 (85.04%), Query Frame = 1
Query:    7 ECFEDNPGILMYGNMCVVYTTGVWLLFASYLELPVSTTHSTVGGIVGMAMAYRGADCVVWYEEADHFPYLSGVSAIVASWVLSPVISGVIAVGLFFAVRNLVLRREDAHKYAISIFPLLVTFTIAVN 387
            ECFEDNPGILMYGNMCVVYTTG WLL AS+ ELPVSTTHST+GGIVGMA+ YRG DCVVWYE+AD FPYL G+SAIVASWVLSPV+S VIAV LF  +R  VLR  D+HK AI +FP LVT TIAVN
Sbjct:   91 ECFEDNPGILMYGNMCVVYTTGFWLLLASFFELPVSTTHSTIGGIVGMAITYRGPDCVVWYEKADLFPYLKGISAIVASWVLSPVLSAVIAVALFLFMRTFVLRSPDSHKRAIVVFPFLVTATIAVN 217          
BLAST of mRNA_S-dermatodea_contig10099.66.1 vs. uniprot
Match: D7FWT9_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT9_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 9.120e-62
Identity = 99/129 (76.74%), Postives = 109/129 (84.50%), Query Frame = 1
Query:    1 QVECFEDNPGILMYGNMCVVYTTGVWLLFASYLELPVSTTHSTVGGIVGMAMAYRGADCVVWYEEADHFPYLSGVSAIVASWVLSPVISGVIAVGLFFAVRNLVLRREDAHKYAISIFPLLVTFTIAVN 387
            QV CF DNPGILMYGNMCVVYT+G WLL AS+ ELPVSTTH+TVGGIVGMAM YRGADCVVWYEEA+ FPYL GVSAIVASW LSPV+S VIAV L+F +R  VLR + + K AI+IFP LVT TIAVN
Sbjct:   96 QVGCFVDNPGILMYGNMCVVYTSGFWLLLASFFELPVSTTHATVGGIVGMAMTYRGADCVVWYEEAEFFPYLKGVSAIVASWALSPVLSAVIAVALYFFMRTFVLRADQSQKKAINIFPCLVTVTIAVN 224          
BLAST of mRNA_S-dermatodea_contig10099.66.1 vs. uniprot
Match: D7FZJ7_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ7_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 2.200e-60
Identity = 94/128 (73.44%), Postives = 105/128 (82.03%), Query Frame = 1
Query:    4 VECFEDNPGILMYGNMCVVYTTGVWLLFASYLELPVSTTHSTVGGIVGMAMAYRGADCVVWYEEADHFPYLSGVSAIVASWVLSPVISGVIAVGLFFAVRNLVLRREDAHKYAISIFPLLVTFTIAVN 387
            +ECF DNPGILMYGNMCVVYT G+WLL AS+ ELPVSTTHST+GGIVGM M YRGADCVVWYEEADHFPY+ GV AIV SW L PV+SGV+A  LFF VR LVLR E A   ++ +FPLLVT TIA+ 
Sbjct:   90 IECFTDNPGILMYGNMCVVYTNGIWLLLASFFELPVSTTHSTIGGIVGMTMTYRGADCVVWYEEADHFPYIKGVFAIVVSWALFPVLSGVVATLLFFVVRALVLRSEHALNRSMIVFPLLVTVTIAIE 217          
BLAST of mRNA_S-dermatodea_contig10099.66.1 vs. uniprot
Match: D8LJQ4_ECTSI (High affinity phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ4_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 9.920e-53
Identity = 76/131 (58.02%), Postives = 101/131 (77.10%), Query Frame = 1
Query:    1 QVECFEDNPGILMYGNMCVVYTTGVWLLFASYLELPVSTTHSTVGGIVGMAMAYRGADCVVWYEEADHFPYLSGVSAIVASWVLSPVISGVIAVGLFFAVRNLVLRREDAHKYAISIFPLLVTFTIAVNGK 393
            +VECF DNPG+LMYG MCVVYTTG+WLL ASYL LPVSTTH+T+G ++GM + Y GA CVVW++E+D FPY+ GV+AI  SWVLSP+ SG++++ +F  VR  VLR  +A   +  +FP+LV   I V+G+
Sbjct:   28 KVECFLDNPGVLMYGMMCVVYTTGMWLLLASYLALPVSTTHATIGAMIGMTVVYGGAGCVVWFQESDSFPYVKGVAAIAVSWVLSPIFSGIVSLLVFLTVRAFVLRSPNAFGRSFWVFPILVMVAITVDGE 158          
BLAST of mRNA_S-dermatodea_contig10099.66.1 vs. uniprot
Match: D8LJQ6_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ6_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 2.760e-52
Identity = 85/128 (66.41%), Postives = 101/128 (78.91%), Query Frame = 1
Query:    4 VECFEDNPGILMYGNMCVVYTTGVWLLFASYLELPVSTTHSTVGGIVGMAMAYRGADCVVWYEEADHFPYLSGVSAIVASWVLSPVISGVIAVGLFFAVRNLVLRREDAHKYAISIFPLLVTFTIAVN 387
            VECF DNPGILMYG MCVVYTTG+WLL ASYLELPVSTTHST+G I+GMA+AY G+ CVVWY+E+D FPY  GV+AI  SWVLSP+ SGV ++ +F  VR  VLR  +A   +  +FP+LV  TIAVN
Sbjct:   50 VECFLDNPGILMYGMMCVVYTTGMWLLLASYLELPVSTTHSTIGAIIGMAVAYAGSGCVVWYQESDIFPYFKGVAAIAVSWVLSPIFSGVASLLVFLTVRAFVLRSPNAFGRSFWVFPVLVMVTIAVN 177          
BLAST of mRNA_S-dermatodea_contig10099.66.1 vs. uniprot
Match: D8LJP9_ECTSI (High affinity phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJP9_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 2.030e-47
Identity = 71/131 (54.20%), Postives = 95/131 (72.52%), Query Frame = 1
Query:    1 QVECFEDNPGILMYGNMCVVYTTGVWLLFASYLELPVSTTHSTVGGIVGMAMAYRGADCVVWYEEADHFPYLSGVSAIVASWVLSPVISGVIAVGLFFAVRNLVLRREDAHKYAISIFPLLVTFTIAVNGK 393
            QV CF DNPG+LMYG MCV+YTT +WLL ASYLELPVS T ST+  IVGM +AY G  CVVW+ E++HFP   GV AI+  W+LSP+++GV +  +F A+R  VLR   A + +  +FP+LV   +A++G+
Sbjct:    6 QVSCFLDNPGVLMYGMMCVLYTTAMWLLLASYLELPVSATQSTISSIVGMTLAYGGRACVVWHRESEHFPGFQGVGAILLYWLLSPIVAGVASCLVFLALRTFVLRSPHAFRRSFWVFPVLVMIIVALDGE 136          
BLAST of mRNA_S-dermatodea_contig10099.66.1 vs. uniprot
Match: A0A7S0QA31_9EUKA (Phosphate transporter n=3 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QA31_9EUKA)

HSP 1 Score: 162 bits (410), Expect = 6.230e-45
Identity = 72/128 (56.25%), Postives = 94/128 (73.44%), Query Frame = 1
Query:    4 VECFEDNPGILMYGNMCVVYTTGVWLLFASYLELPVSTTHSTVGGIVGMAMAYRGADCVVWYEEADHFPYLSGVSAIVASWVLSPVISGVIAVGLFFAVRNLVLRREDAHKYAISIFPLLVTFTIAVN 387
            ++CF D P +LMYG +CV+++ G WLL ASYLE+PVSTTHS VGG++GMAM   G  CV+W E  D FPY+ GVSAIV SW LSP++S + A+GLF  VR  VLR +D++  A  ++PLLV  TI +N
Sbjct:   79 IDCFVDEPAVLMYGCLCVIFSVGGWLLLASYLEMPVSTTHSCVGGMIGMAMVAHGPACVIWAEPTDQFPYVKGVSAIVISWFLSPLLSAISAMGLFLLVRTTVLRAKDSYDRAFKVYPLLVGVTIFIN 206          
BLAST of mRNA_S-dermatodea_contig10099.66.1 vs. uniprot
Match: A0A7R9T173_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A0A7R9T173_9CHLO)

HSP 1 Score: 150 bits (379), Expect = 2.470e-43
Identity = 63/127 (49.61%), Postives = 95/127 (74.80%), Query Frame = 1
Query:    7 ECFEDNPGILMYGNMCVVYTTGVWLLFASYLELPVSTTHSTVGGIVGMAMAYRGADCVVWYEEADHFPYLSGVSAIVASWVLSPVISGVIAVGLFFAVRNLVLRREDAHKYAISIFPLLVTFTIAVN 387
            +CF D+PG+LMYG +CV+++  +WL+ AS+LE+PVSTTHS VGG++GM M  RG+ CVVW  ++D FPY+ GV+AIV SW+LSP++SG  +   F  +R LV+R ++++  A   FP+L+  T+ +N
Sbjct:   16 DCFNDDPGLLMYGCLCVIFSVAIWLVVASFLEMPVSTTHSCVGGMIGMTMVARGSSCVVWSAKSDTFPYIKGVAAIVVSWLLSPIVSGGFSFVFFLTLRALVMRSQNSYARARLAFPVLLACTLIIN 142          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10099.66.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNL8_9PHAE2.980e-6777.27Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
A0A6H5JNE7_9PHAE9.470e-6680.47Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7G0K9_ECTSI6.460e-6377.95Phosphate transporter n=2 Tax=Ectocarpus siliculos... [more]
D7FWT9_ECTSI9.120e-6276.74Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D7FZJ7_ECTSI2.200e-6073.44Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D8LJQ4_ECTSI9.920e-5358.02High affinity phosphate transporter n=1 Tax=Ectoca... [more]
D8LJQ6_ECTSI2.760e-5266.41Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D8LJP9_ECTSI2.030e-4754.20High affinity phosphate transporter n=1 Tax=Ectoca... [more]
A0A7S0QA31_9EUKA6.230e-4556.25Phosphate transporter n=3 Tax=Coccolithus braarudi... [more]
A0A7R9T173_9CHLO2.470e-4349.61Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10099contigS-dermatodea_contig10099:598..1014 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score219.5
Seed ortholog evalue9.5e-55
Seed eggNOG ortholog2880.D7G0K8
Preferred namePHO89
KEGG koko:K01280,ko:K03306,ko:K14640
KEGG TC2.A.20,2.A.20.2
GOsGO:0003674,GO:0005215,GO:0005315,GO:0005436,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006817,GO:0006820,GO:0008150,GO:0008324,GO:0012505,GO:0015075,GO:0015077,GO:0015081,GO:0015291,GO:0015293,GO:0015294,GO:0015318,GO:0015319,GO:0015370,GO:0015672,GO:0015698,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0034220,GO:0035435,GO:0035725,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098655,GO:0098656,GO:0098660,GO:0098661,GO:0098662
EggNOG free text desc.inorganic phosphate transmembrane transporter activity
EggNOG OGsCOG0306@1,KOG2493@2759
EC3.4.14.10
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko02000,ko03110
Hectar predicted targeting categoryother localisation
Exons1
Model size417
Cds size417
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924138.8217382-CDS-S-dermatodea_contig10099:597..10141622924138.8217382-CDS-S-dermatodea_contig10099:597..1014Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10099 598..1014 -
1694079043.9071798-CDS-S-dermatodea_contig10099:597..10141694079043.9071798-CDS-S-dermatodea_contig10099:597..1014Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10099 598..1014 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10099.66.1prot_S-dermatodea_contig10099.66.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10099 598..1014 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10099.66.1

>prot_S-dermatodea_contig10099.66.1 ID=prot_S-dermatodea_contig10099.66.1|Name=mRNA_S-dermatodea_contig10099.66.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=139bp
QVECFEDNPGILMYGNMCVVYTTGVWLLFASYLELPVSTTHSTVGGIVGM
AMAYRGADCVVWYEEADHFPYLSGVSAIVASWVLSPVISGVIAVGLFFAV
RNLVLRREDAHKYAISIFPLLVTFTIAVNGKRPGGIVR*
back to top

mRNA from alignment at S-dermatodea_contig10099:598..1014-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10099.66.1 ID=mRNA_S-dermatodea_contig10099.66.1|Name=mRNA_S-dermatodea_contig10099.66.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=417bp|location=Sequence derived from alignment at S-dermatodea_contig10099:598..1014- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGGAGTGTTTCGAGGACAACCCGGGTATCCTCATGTACGGCAACAT GTGCGTTGTCTATACCACCGGCGTCTGGCTCCTCTTCGCCTCGTACCTAG AGCTCCCCGTGTCCACCACCCACTCCACCGTGGGAGGCATCGTCGGAATG GCCATGGCGTACCGAGGGGCCGACTGTGTGGTTTGGTACGAAGAGGCCGA CCACTTCCCCTACCTATCGGGGGTGTCCGCCATTGTGGCCTCGTGGGTGC TGTCGCCTGTAATTTCGGGCGTCATCGCGGTGGGTCTCTTCTTCGCAGTG CGCAATCTTGTCCTCCGCCGCGAAGACGCGCACAAGTACGCCATCAGCAT CTTCCCGCTGCTCGTCACCTTCACCATCGCAGTCAACGGTAAGCGCCCAG GAGGCATCGTACGGTAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10099:598..1014-

>mRNA_S-dermatodea_contig10099.66.1 ID=mRNA_S-dermatodea_contig10099.66.1|Name=mRNA_S-dermatodea_contig10099.66.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at S-dermatodea_contig10099:598..1014- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGGAGTGTTTCGAGGACAACCCGGGTATCCTCATGTACGGCAACAT
GTGCGTTGTCTATACCACCGGCGTCTGGCTCCTCTTCGCCTCGTACCTAG
AGCTCCCCGTGTCCACCACCCACTCCACCGTGGGAGGCATCGTCGGAATG
GCCATGGCGTACCGAGGGGCCGACTGTGTGGTTTGGTACGAAGAGGCCGA
CCACTTCCCCTACCTATCGGGGGTGTCCGCCATTGTGGCCTCGTGGGTGC
TGTCGCCTGTAATTTCGGGCGTCATCGCGGTGGGTCTCTTCTTCGCAGTG
CGCAATCTTGTCCTCCGCCGCGAAGACGCGCACAAGTACGCCATCAGCAT
CTTCCCGCTGCTCGTCACCTTCACCATCGCAGTCAACGGTAAGCGCCCAG
GAGGCATCGTACGGTAGCAGGTGGAGTGTTTCGAGGACAACCCGGGTATC
CTCATGTACGGCAACATGTGCGTTGTCTATACCACCGGCGTCTGGCTCCT
CTTCGCCTCGTACCTAGAGCTCCCCGTGTCCACCACCCACTCCACCGTGG
GAGGCATCGTCGGAATGGCCATGGCGTACCGAGGGGCCGACTGTGTGGTT
TGGTACGAAGAGGCCGACCACTTCCCCTACCTATCGGGGGTGTCCGCCAT
TGTGGCCTCGTGGGTGCTGTCGCCTGTAATTTCGGGCGTCATCGCGGTGG
GTCTCTTCTTCGCAGTGCGCAATCTTGTCCTCCGCCGCGAAGACGCGCAC
AAGTACGCCATCAGCATCTTCCCGCTGCTCGTCACCTTCACCATCGCAGT
CAACGGTAAGCGCCCAGGAGGCATCGTACGGTAG
back to top