mRNA_S-dermatodea_contig10999.652.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10999.652.1
Unique NamemRNA_S-dermatodea_contig10999.652.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10999.652.1 vs. uniprot
Match: A0A3N2PT46_9PEZI (Uncharacterized protein n=1 Tax=Sodiomyces alkalinus F11 TaxID=1314773 RepID=A0A3N2PT46_9PEZI)

HSP 1 Score: 74.3 bits (181), Expect = 1.750e-13
Identity = 44/126 (34.92%), Postives = 68/126 (53.97%), Query Frame = 1 
Query:    4 DVKDLIASFDFGKLVDGRGH--ECSHGCVFPLAPSFGKLSATTIKAMSDTVKIAIADTTRVIAGLSDKSWSCVTRALAQISTLEQVGEETYRSGKVMEDRGASFVKKSDPDPAATSKIGRWFEDLV 375
            DV D+I  FDF K+     H  E  H     LAPS+GKL++++++ + D +KI ++ T + +A L +K W+ V   + Q   LE  G E  RS  +++D  A F     PD A  S++  WF  L+
Sbjct:   20 DVADVILGFDFSKMDVTTTHSEEYLHT---ELAPSYGKLTSSSLEELDDHLKIMMSGTMKSLAKLENKDWASVVGTMMQNPLLETDGSEIDRSDMLIKDSVADFKFDGSPDSAIVSEVQSWFTKLI 142
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BLAST of mRNA_S-dermatodea_contig10999.652.1 vs. uniprot
Match: A0A2R6WK78_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WK78_MARPO)

HSP 1 Score: 70.9 bits (172), Expect = 3.320e-12
Identity = 41/127 (32.28%), Postives = 66/127 (51.97%), Query Frame = 1 
Query:    1 KDVKDLIASFDFGKLVDGRGH--ECSHGCVFPLAPSFGKLSATTIKAMSDTVKIAIADTTRVIAGLSDKSWSCVTRALAQISTLEQVGEETYRSGKVMEDRGASFVKKSDPDPAATSKIGRWFEDLV 375
            KD+  ++++FD+ K      H  E  H     LAPS+GKL++ ++KA+ + +KI IA T   I  L+DKSW  V   + Q   LE    E  R+ K+++   ++F     PD     ++  WF  L+
Sbjct:   16 KDIGTIVSTFDWSKCNVRSSHSEEYLHT---DLAPSYGKLTSDSVKALDENLKIMIAGTLTTIGKLTDKSWKSVLGTMMQHPLLEPDSAEVARADKLIKASSSAFKFDGSPDAQIVREVKTWFTKLI 139
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10999.652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A3N2PT46_9PEZI1.750e-1334.92Uncharacterized protein n=1 Tax=Sodiomyces alkalin... [more]
A0A2R6WK78_MARPO3.320e-1232.28Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10999contigS-dermatodea_contig10999:6504..6878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924182.6372693-CDS-S-dermatodea_contig10999:6503..68781622924182.6372693-CDS-S-dermatodea_contig10999:6503..6878Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10999 6504..6878 -
1694079074.8091536-CDS-S-dermatodea_contig10999:6503..68781694079074.8091536-CDS-S-dermatodea_contig10999:6503..6878Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10999 6504..6878 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10999.652.1prot_S-dermatodea_contig10999.652.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10999 6504..6878 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10999.652.1

>prot_S-dermatodea_contig10999.652.1 ID=prot_S-dermatodea_contig10999.652.1|Name=mRNA_S-dermatodea_contig10999.652.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=125bp
KDVKDLIASFDFGKLVDGRGHECSHGCVFPLAPSFGKLSATTIKAMSDTV
KIAIADTTRVIAGLSDKSWSCVTRALAQISTLEQVGEETYRSGKVMEDRG
ASFVKKSDPDPAATSKIGRWFEDLV
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mRNA from alignment at S-dermatodea_contig10999:6504..6878-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10999.652.1 ID=mRNA_S-dermatodea_contig10999.652.1|Name=mRNA_S-dermatodea_contig10999.652.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=375bp|location=Sequence derived from alignment at S-dermatodea_contig10999:6504..6878- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAAGACGTGAAGGACCTCATCGCAAGCTTTGATTTCGGAAAGCTTGTCGA
CGGGCGAGGCCACGAGTGCTCGCACGGCTGTGTCTTCCCCCTCGCGCCCT
CCTTTGGGAAGCTCAGCGCCACAACCATCAAGGCGATGAGCGACACCGTC
AAGATAGCCATCGCGGATACGACGCGCGTCATCGCCGGCCTATCGGATAA
ATCTTGGTCTTGCGTGACCAGAGCTTTGGCGCAGATCTCCACGTTGGAGC
AGGTCGGGGAAGAGACGTACCGGTCGGGGAAGGTCATGGAAGACCGTGGG
GCCTCTTTCGTCAAGAAATCCGACCCGGACCCCGCGGCCACTAGCAAGAT
TGGTCGCTGGTTTGAGGACCTCGTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10999:6504..6878-

>mRNA_S-dermatodea_contig10999.652.1 ID=mRNA_S-dermatodea_contig10999.652.1|Name=mRNA_S-dermatodea_contig10999.652.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at S-dermatodea_contig10999:6504..6878- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAAGACGTGAAGGACCTCATCGCAAGCTTTGATTTCGGAAAGCTTGTCGA
CGGGCGAGGCCACGAGTGCTCGCACGGCTGTGTCTTCCCCCTCGCGCCCT
CCTTTGGGAAGCTCAGCGCCACAACCATCAAGGCGATGAGCGACACCGTC
AAGATAGCCATCGCGGATACGACGCGCGTCATCGCCGGCCTATCGGATAA
ATCTTGGTCTTGCGTGACCAGAGCTTTGGCGCAGATCTCCACGTTGGAGC
AGGTCGGGGAAGAGACGTACCGGTCGGGGAAGGTCATGGAAGACCGTGGG
GCCTCTTTCGTCAAGAAATCCGACCCGGACCCCGCGGCCACTAGCAAGAT
TGGTCGCTGGTTTGAGGACCTCGTCAAAGACGTGAAGGACCTCATCGCAA
GCTTTGATTTCGGAAAGCTTGTCGACGGGCGAGGCCACGAGTGCTCGCAC
GGCTGTGTCTTCCCCCTCGCGCCCTCCTTTGGGAAGCTCAGCGCCACAAC
CATCAAGGCGATGAGCGACACCGTCAAGATAGCCATCGCGGATACGACGC
GCGTCATCGCCGGCCTATCGGATAAATCTTGGTCTTGCGTGACCAGAGCT
TTGGCGCAGATCTCCACGTTGGAGCAGGTCGGGGAAGAGACGTACCGGTC
GGGGAAGGTCATGGAAGACCGTGGGGCCTCTTTCGTCAAGAAATCCGACC
CGGACCCCGCGGCCACTAGCAAGATTGGTCGCTGGTTTGAGGACCTCGTC
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