mRNA_S-dermatodea_contig10988.648.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10988.648.1
Unique NamemRNA_S-dermatodea_contig10988.648.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10988.648.1 vs. uniprot
Match: A0A6H5JKS9_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS9_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 4.740e-7
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 3 
Query:   90 RPVSPTRTAAVVRRQSVSKPHNWPHLHEPQLERS 191
            +P SP R+AAVVRRQSVSKPHNWPHLH  + E S
Sbjct:  160 KPASPKRSAAVVRRQSVSKPHNWPHLHSDEFEPS 193
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BLAST of mRNA_S-dermatodea_contig10988.648.1 vs. uniprot
Match: D7G893_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G893_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 5.540e-6
Identity = 24/34 (70.59%), Postives = 27/34 (79.41%), Query Frame = 3 
Query:   90 RPVSPTRTAAVVRRQSVSKPHNWPHLHEPQLERS 191
            +P SP R+ AVVRRQSVSKPHNWPHLH  + E S
Sbjct:  155 KPGSPKRSVAVVRRQSVSKPHNWPHLHTDEFEPS 188
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10988.648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKS9_9PHAE4.740e-773.53USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G893_ECTSI5.540e-670.59USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10988contigS-dermatodea_contig10988:1494..3614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924182.4808996-CDS-S-dermatodea_contig10988:1493..16531622924182.4808996-CDS-S-dermatodea_contig10988:1493..1653Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10988 1494..1653 -
1694079074.7153401-CDS-S-dermatodea_contig10988:1493..16531694079074.7153401-CDS-S-dermatodea_contig10988:1493..1653Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10988 1494..1653 -
1622924182.4901514-CDS-S-dermatodea_contig10988:3468..36141622924182.4901514-CDS-S-dermatodea_contig10988:3468..3614Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10988 3469..3614 -
1694079074.7261388-CDS-S-dermatodea_contig10988:3468..36141694079074.7261388-CDS-S-dermatodea_contig10988:3468..3614Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10988 3469..3614 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10988.648.1prot_S-dermatodea_contig10988.648.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10988 1494..3614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10988.648.1

>prot_S-dermatodea_contig10988.648.1 ID=prot_S-dermatodea_contig10988.648.1|Name=mRNA_S-dermatodea_contig10988.648.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=102bp
MRGALLSKRESLGRAAARPELENRRRPERTGRCRLRELPLSSGGSRCPSL
TTGRTSTSLNSNGLFSQPFIRCSLRRRPPKPPRRGRGPPPPQTPPTSAGW
GW
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mRNA from alignment at S-dermatodea_contig10988:1494..3614-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10988.648.1 ID=mRNA_S-dermatodea_contig10988.648.1|Name=mRNA_S-dermatodea_contig10988.648.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2121bp|location=Sequence derived from alignment at S-dermatodea_contig10988:1494..3614- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGGGGGGCTCTACTGTCGAAGAGAGAAAGTCTGGGTCGGGCGGCGGC
CCGGCCAGAATTGGAAAACCGGCGGAGGCCGGAGCGAACCGGCCGGTGTC
GCCTACGCGAACTGCCGCTGTCGTCCGGAGGCAGTCGGTGTCCAAGGTGA
GAAGGAATTTTTCGGGCGCGTGTGGCTCACCGTTCTTGTGTGTGTGTGTG
TGTTTTTTTTTTTAGAGTTTTTGCTTGGATGTTCACGTACTGGAAGTGTT
TTGTTTTTGTTTTTTGTTTTTCAAAATAGTTTTTGTAATATATATTATTC
GGTATATTTGGTCATTAATGTGCAGTCACCCCTGACCAAAGAAGGAAGTG
GAAACCTCGGGGAGGCATCTGCCCCAAATCTCTTCGCGAGTTTTTGCTAT
TATTTATGTATTCACAGTTATTTTCTATTTTAGCCTTTTTCTATATCTGG
GACTTCTCTCTTGTAGCATATTATGTACAGTACCAGGGACGGTACGGTGT
ACAGTGTGTAAGTAGATTTATGATTAGTTGGTTTTCTCCTTTACTCTTAG
CGTATCTGACCACAGGTTGGATAGGTCGGATTCAGCCGATCGGCTATACG
TGTGCAAACCAATCAATTCATCAATCAGCAATCAGGACCACAGTTCTGCT
CAATATAAGTATGATACTTGCATTATTCATAGCGTATTAAAGTATTACAA
GTACAGTGTTTTCAAACGTTGGCCCGAACACTTGTCAAATCGTTGTGCTT
TTTTTGGGGTTCTGATAAACATTTATTTCAGGCTTTTGTACGCGGTGCTT
CTTTGTTTTTTTTATTGCATTTTACACGGTTCTCTCTCTTGTAATTACGT
TTCGTTTTTTTTTTTTTTTTAGTTGAGCGGTATGGGTAAATAGCATGTAT
GTGTTACAGTGATTCTTCCAAGCAATCGTCTCTCGCCGAAGAACACAATA
GTACTATTTTTGACCCCCCACTCCGGACAGCAGCCTAAACAAGACGAGTT
GTCCAAAATTGGAGATTGTCGTTATTACTTACCCCTTTTGGGACTAAAGC
TGTTTTCGGGTAACTGTTGTTTGCTGTTATTATTTACCCTTTTGGGACTA
AGCCTGGGGACGAAGCCTGTTTTTGGGCCTTAGTCCCAAAACAAAAGGGT
ATATAATAATAGCAAACAGTTACCCGAAAACAGCCTTAGTCCCAAAAGGG
TAATAGCGCTTTGACCAATTTTTAATAATATAGCAATTTTAGAGAACGAA
ATTGTGAGGCCGGAATCCTATAGGAAAAAGTGAAGCTAAACAACTTGATG
GTTGTGTTGAGCGCCAAGCATTGAAAACAGTAGGATTTTTCACCTCACGG
GCGTCGCCGTCGCTACCTACTATTATAGTGTAGTATATATATAGTGTATA
TAGTGTATATAGTGTATATAGTGTATATAGTGTATACTTAACTAGTGTAT
TAAGAGTGTATTGATTCTGTAGTGTAAGTGTAGCTGTAATTTGGGGTTTC
ATAGGGGTATACAATCAGGTACACAGCCTACACACGTGCTATTTTTAATC
TGGTATACTAGATATTAATATTAAACATGAATAGTAGAGAGGTCCAAAGT
ATTCAACAATTAAAGGTTAAAAAAAGCCAGAGCGAGCGTTGGGGTCCTCC
AATCTCAATCTCTTTAAGCTAACCGCCCTAGAGGCATAGCCCCTCCCTGT
TTTATCTATGCTATTTAAATGCGAATTAGAGTTGATTATTGTGCAGAAAG
TAACAGCCATTTCTTTCGCGAACTAAAAGTCACAGTGATTTCAGAGGGGG
CCCTCATAAACAACTGGTGAAAAGAGTAAGATTTTTTATTTTTCGCCTCA
CGGGCGTAGCCTAGCCTAGCCGTGGTTTCCTACTATAATAGTTCCTCTCT
AGTTTATTAATTCTCTACAAACCCCCTCCTTCCGGCCCGCCCTCCCTCCC
TCTTCCTTCAGCCTCACAACTGGCCGCACCTCCACGAGCCTCAACTCGAA
CGGTCTTTTCAGCCAGCCTTTCATCCGATGCAGCCTTCGCCGTCGACCCC
CAAAGCCTCCTCGGCGGGGGCGGGGGCCACCGCCTCCGCAGACCCCACCA
ACCTCCGCAGGATGGGGGTGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10988:1494..3614-

>mRNA_S-dermatodea_contig10988.648.1 ID=mRNA_S-dermatodea_contig10988.648.1|Name=mRNA_S-dermatodea_contig10988.648.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at S-dermatodea_contig10988:1494..3614- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGGGGGGCTCTACTGTCGAAGAGAGAAAGTCTGGGTCGGGCGGCGGC
CCGGCCAGAATTGGAAAACCGGCGGAGGCCGGAGCGAACCGGCCGGTGTC
GCCTACGCGAACTGCCGCTGTCGTCCGGAGGCAGTCGGTGTCCAAGATGC
GGGGGGCTCTACTGTCGAAGAGAGAAAGTCTGGGTCGGGCGGCGGCCCGG
CCAGAATTGGAAAACCGGCGGAGGCCGGAGCGAACCGGCCGGTGTCGCCT
ACGCGAACTGCCGCTGTCGTCCGGAGGCAGTCGGTGTCCAAGCCTCACAA
CTGGCCGCACCTCCACGAGCCTCAACTCGAACGGTCTTTTCAGCCAGCCT
TTCATCCGATGCAGCCTTCGCCGTCGACCCCCAAAGCCTCCTCGGCGGGG
GCGGGGGCCACCGCCTCCGCAGACCCCACCAACCTCCGCAGGATGGGGGT
GGCCTCACAACTGGCCGCACCTCCACGAGCCTCAACTCGAACGGTCTTTT
CAGCCAGCCTTTCATCCGATGCAGCCTTCGCCGTCGACCCCCAAAGCCTC
CTCGGCGGGGGCGGGGGCCACCGCCTCCGCAGACCCCACCAACCTCCGCA
GGATGGGGGTGG
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