mRNA_S-dermatodea_contig10976.644.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10976.644.1
Unique NamemRNA_S-dermatodea_contig10976.644.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10976.644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10976contigS-dermatodea_contig10976:3096..3642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size548
Cds size546
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924182.2524145-CDS-S-dermatodea_contig10976:3095..36411622924182.2524145-CDS-S-dermatodea_contig10976:3095..3641Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10976 3096..3641 +
1694079074.561642-CDS-S-dermatodea_contig10976:3095..36411694079074.561642-CDS-S-dermatodea_contig10976:3095..3641Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10976 3096..3641 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10976.644.1prot_S-dermatodea_contig10976.644.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10976 3096..3641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10976.644.1

>prot_S-dermatodea_contig10976.644.1 ID=prot_S-dermatodea_contig10976.644.1|Name=mRNA_S-dermatodea_contig10976.644.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=182bp
GDSQRSSSSPPVANSSESPGTSLGSEVAEKRGAGGGGGVDKRTEEAERED
SPGKGAASGEKKHKKKRKKPASSEDDAGDATAATALPSEASHPEPAIPEA
SPETAVDASQGKRKRGGVEEGDAESKSEGRVEAGASDRVPPKAKKSRKKK
KKRSKGVDVVASGKEAAVRGAGASAATDPERP
back to top

mRNA from alignment at S-dermatodea_contig10976:3096..3642+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10976.644.1 ID=mRNA_S-dermatodea_contig10976.644.1|Name=mRNA_S-dermatodea_contig10976.644.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=547bp|location=Sequence derived from alignment at S-dermatodea_contig10976:3096..3642+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAGATAGTCAGCGGTCGTCATCGAGTCCGCCCGTCGCGAACTCCAGCGA
GTCGCCCGGAACGTCTTTGGGCTCGGAGGTGGCCGAGAAACGCGGTGCCG
GCGGCGGCGGCGGTGTAGACAAGCGGACCGAAGAGGCAGAGAGGGAAGAT
TCACCTGGGAAGGGCGCGGCGTCGGGCGAAAAGAAACACAAGAAGAAGAG
AAAGAAGCCCGCCAGCTCGGAGGACGACGCCGGAGACGCAACGGCGGCGA
CGGCGTTACCTTCCGAGGCTTCTCACCCGGAACCCGCGATACCCGAAGCC
TCGCCGGAAACCGCAGTAGACGCGTCACAGGGCAAGCGGAAGCGGGGGGG
CGTAGAAGAGGGAGACGCGGAAAGCAAAAGCGAGGGACGCGTAGAGGCGG
GGGCGAGCGACAGGGTCCCTCCCAAGGCAAAGAAATCGAGGAAGAAGAAG
AAGAAAAGGTCCAAGGGCGTGGATGTGGTGGCATCGGGGAAGGAGGCGGC
GGTGCGAGGGGCAGGAGCTTCCGCCGCCACGGACCCCGAACGTCCGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10976:3096..3642+

>mRNA_S-dermatodea_contig10976.644.1 ID=mRNA_S-dermatodea_contig10976.644.1|Name=mRNA_S-dermatodea_contig10976.644.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1092bp|location=Sequence derived from alignment at S-dermatodea_contig10976:3096..3642+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAGATAGTCAGCGGTCGTCATCGAGTCCGCCCGTCGCGAACTCCAGCGA
GTCGCCCGGAACGTCTTTGGGCTCGGAGGTGGCCGAGAAACGCGGTGCCG
GCGGCGGCGGCGGTGTAGACAAGCGGACCGAAGAGGCAGAGAGGGAAGAT
TCACCTGGGAAGGGCGCGGCGTCGGGCGAAAAGAAACACAAGAAGAAGAG
AAAGAAGCCCGCCAGCTCGGAGGACGACGCCGGAGACGCAACGGCGGCGA
CGGCGTTACCTTCCGAGGCTTCTCACCCGGAACCCGCGATACCCGAAGCC
TCGCCGGAAACCGCAGTAGACGCGTCACAGGGCAAGCGGAAGCGGGGGGG
CGTAGAAGAGGGAGACGCGGAAAGCAAAAGCGAGGGACGCGTAGAGGCGG
GGGCGAGCGACAGGGTCCCTCCCAAGGCAAAGAAATCGAGGAAGAAGAAG
AAGAAAAGGTCCAAGGGCGTGGATGTGGTGGCATCGGGGAAGGAGGCGGC
GGTGCGAGGGGCAGGAGCTTCCGCCGCCACGGACCCCGAACGTCCGGGAG
ATAGTCAGCGGTCGTCATCGAGTCCGCCCGTCGCGAACTCCAGCGAGTCG
CCCGGAACGTCTTTGGGCTCGGAGGTGGCCGAGAAACGCGGTGCCGGCGG
CGGCGGCGGTGTAGACAAGCGGACCGAAGAGGCAGAGAGGGAAGATTCAC
CTGGGAAGGGCGCGGCGTCGGGCGAAAAGAAACACAAGAAGAAGAGAAAG
AAGCCCGCCAGCTCGGAGGACGACGCCGGAGACGCAACGGCGGCGACGGC
GTTACCTTCCGAGGCTTCTCACCCGGAACCCGCGATACCCGAAGCCTCGC
CGGAAACCGCAGTAGACGCGTCACAGGGCAAGCGGAAGCGGGGGGGCGTA
GAAGAGGGAGACGCGGAAAGCAAAAGCGAGGGACGCGTAGAGGCGGGGGC
GAGCGACAGGGTCCCTCCCAAGGCAAAGAAATCGAGGAAGAAGAAGAAGA
AAAGGTCCAAGGGCGTGGATGTGGTGGCATCGGGGAAGGAGGCGGCGGTG
CGAGGGGCAGGAGCTTCCGCCGCCACGGACCCCGAACGTCCG
back to top