mRNA_S-dermatodea_contig10953.630.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10953.630.1
Unique NamemRNA_S-dermatodea_contig10953.630.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10953.630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10953contigS-dermatodea_contig10953:3006..3155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_008290.1
Exons1
Model size151
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924181.3801007-CDS-S-dermatodea_contig10953:3005..31551622924181.3801007-CDS-S-dermatodea_contig10953:3005..3155Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10953 3006..3155 -
1694079073.9442825-CDS-S-dermatodea_contig10953:3005..31551694079073.9442825-CDS-S-dermatodea_contig10953:3005..3155Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10953 3006..3155 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10953.630.1prot_S-dermatodea_contig10953.630.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10953 3006..3155 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10953.630.1

>prot_S-dermatodea_contig10953.630.1 ID=prot_S-dermatodea_contig10953.630.1|Name=mRNA_S-dermatodea_contig10953.630.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=50bp
LASLVCSSSSRATSSSRTAPTWRWRQSKDTATSPNSRISAHTASNSSVHG
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mRNA from alignment at S-dermatodea_contig10953:3006..3155-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10953.630.1 ID=mRNA_S-dermatodea_contig10953.630.1|Name=mRNA_S-dermatodea_contig10953.630.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at S-dermatodea_contig10953:3006..3155- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGGCCTCCCTTGTCTGTTCTTCCTCTTCACGCGCGACGAGCTCCTCGCG
AACGGCTCCAACATGGCGGTGGCGACAAAGCAAAGACACCGCTACATCTC
CTAATTCCCGAATCAGCGCGCACACGGCTTCCAACTCGTCCGTGCACGGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig10953:3006..3155-

>mRNA_S-dermatodea_contig10953.630.1 ID=mRNA_S-dermatodea_contig10953.630.1|Name=mRNA_S-dermatodea_contig10953.630.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at S-dermatodea_contig10953:3006..3155- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGGCCTCCCTTGTCTGTTCTTCCTCTTCACGCGCGACGAGCTCCTCGCG
AACGGCTCCAACATGGCGGTGGCGACAAAGCAAAGACACCGCTACATCTC
CTAATTCCCGAATCAGCGCGCACACGGCTTCCAACTCGTCCGTGCACGGT
CTGGCCTCCCTTGTCTGTTCTTCCTCTTCACGCGCGACGAGCTCCTCGCG
AACGGCTCCAACATGGCGGTGGCGACAAAGCAAAGACACCGCTACATCTC
CTAATTCCCGAATCAGCGCGCACACGGCTTCCAACTCGTCCGTGCACGGT
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