mRNA_S-dermatodea_contig10946.626.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10946.626.1
Unique NamemRNA_S-dermatodea_contig10946.626.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10946.626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10946contigS-dermatodea_contig10946:5605..6814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size386
Cds size246
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10946.626.1prot_S-dermatodea_contig10946.626.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10946 5639..6071 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924181.0885751-UTR-S-dermatodea_contig10946:5604..56381622924181.0885751-UTR-S-dermatodea_contig10946:5604..5638Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10946 5605..5638 -
1694079073.7822962-UTR-S-dermatodea_contig10946:5604..56381694079073.7822962-UTR-S-dermatodea_contig10946:5604..5638Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10946 5605..5638 -
1622924181.1258836-UTR-S-dermatodea_contig10946:6071..61071622924181.1258836-UTR-S-dermatodea_contig10946:6071..6107Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10946 6072..6107 -
1694079073.8271646-UTR-S-dermatodea_contig10946:6071..61071694079073.8271646-UTR-S-dermatodea_contig10946:6071..6107Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10946 6072..6107 -
1622924181.1352942-UTR-S-dermatodea_contig10946:6744..68141622924181.1352942-UTR-S-dermatodea_contig10946:6744..6814Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10946 6745..6814 -
1694079073.8376544-UTR-S-dermatodea_contig10946:6744..68141694079073.8376544-UTR-S-dermatodea_contig10946:6744..6814Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10946 6745..6814 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924181.1015172-CDS-S-dermatodea_contig10946:5638..57611622924181.1015172-CDS-S-dermatodea_contig10946:5638..5761Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10946 5639..5761 -
1694079073.7945588-CDS-S-dermatodea_contig10946:5638..57611694079073.7945588-CDS-S-dermatodea_contig10946:5638..5761Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10946 5639..5761 -
1622924181.1157143-CDS-S-dermatodea_contig10946:5948..60711622924181.1157143-CDS-S-dermatodea_contig10946:5948..6071Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10946 5949..6071 -
1694079073.8150344-CDS-S-dermatodea_contig10946:5948..60711694079073.8150344-CDS-S-dermatodea_contig10946:5948..6071Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10946 5949..6071 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10946.626.1

>prot_S-dermatodea_contig10946.626.1 ID=prot_S-dermatodea_contig10946.626.1|Name=mRNA_S-dermatodea_contig10946.626.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=82bp
MSTTYVHLGGALGDVVISGPEDSGGGKVHAPAHLILTTAVKEHKLQYVEG
VREVAAAERTFREATGISVMVASTHVNLSNM*
back to top

mRNA from alignment at S-dermatodea_contig10946:5605..6814-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10946.626.1 ID=mRNA_S-dermatodea_contig10946.626.1|Name=mRNA_S-dermatodea_contig10946.626.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1210bp|location=Sequence derived from alignment at S-dermatodea_contig10946:5605..6814- (Saccorhiza dermatodea SderLu1190fm monoicous)
TGATCGAGTGCAAACTATCTGCAGTGCAGCCATCGAACTTTTGGAGGACA
CGGTTCGGAGGCTGGCCAAGGTGGTTGCTACCGTGTACCCTGTGAAGCAG
AGCATGGCTTCTTGATTCGTAGTCTTGTGTCTACATCGCTGCAAAAAAGA
ACATGTGCGCTTTCATGCTGGCATGCCGCCCTTCGCGACGCTTTCTGGTT
CAATGGGGGTTGTTCGAACCTCATTTTCACTCTAAAAATACACCCACGAA
ACGCGACGTTTACAGTTCATTACTTGTAGTGAACGCCCACTTCCCGAAAC
TTTTACTTTTTGGTCGTGGCTTTGGAGTGGATGCCCTGATCTCGAAACGA
CTAAAAAAACAATCATGGCGAAACAGCGTATATTGGAAAATGGTCCATCC
TATCGAACTCGTTTCTTCGCAGAGATGTACGCCTCACAAGATGTTTTTTT
GTACACGTATTTTGACTATCCTCGCCTTTATGCAATTTAGGACTCACCTT
ATTTCCGTAGAACTTATAAAAAAACTTGCTAGACTTTTCTTATTTTTGGA
CCGGCGTAGTTCGCACAGGCGGCGCACAGGAGGCGCACAGGATTCCATCT
CGTTTCGTGAGAAAACACGCGATCGATTCAAACGGTCCTTAGTAATCCAA
ATCCACCAAAAACATCTTTTCGTCGTTTATCTCCGGTCATTTCCTTCGTA
CCGGCAGCTCCTGAAGACCAAGGCGAAGCGTGACAAGGAGAGAATGTCAA
CGACATATGTCCACTTGGGAGGAGCGCTTGGCGACGTGGTAATTTCAGGC
CCCGAAGATTCTGGCGGAGGCAAGGTGCATGCTCCAGCCCATCTCATCCT
CACTACCGCGGTGAAGGTGAGATACTACGTAAGGGTGATCATTTCCAAGA
ATTATTGCTGGATTTGTGCTACGTAGTAACTCTCGTGTACAGTATTTGAG
TAGTGGTGTGTGGCTGACCCAGGTCAGTATCCACCCCTTACCGCAACAAT
TTTCGCTCACGCCTTGCGGGGCATATTTCACGCTACCGCTTTTCCATATC
CAGGAGCACAAGCTGCAATACGTTGAAGGTGTACGGGAGGTAGCGGCAGC
CGAGCGAACTTTCCGTGAGGCTACTGGAATCTCCGTCATGGTGGCTTCCA
CTCACGTGAATCTAAGCAACATGTAAGTGTGGCCTCTTATACCTTCAGCA
CGATGTCGTC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10946:5605..6814-

>mRNA_S-dermatodea_contig10946.626.1 ID=mRNA_S-dermatodea_contig10946.626.1|Name=mRNA_S-dermatodea_contig10946.626.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at S-dermatodea_contig10946:5605..6814- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCAACGACATATGTCCACTTGGGAGGAGCGCTTGGCGACGTGGTAAT
TTCAGGCCCCGAAGATTCTGGCGGAGGCAAGGTGCATGCTCCAGCCCATC
TCATCCTCACTACCGCGGTGAAGATGTCAACGACATATGTCCACTTGGGA
GGAGCGCTTGGCGACGTGGTAATTTCAGGCCCCGAAGATTCTGGCGGAGG
CAAGGTGCATGCTCCAGCCCATCTCATCCTCACTACCGCGGTGAAGGAGC
ACAAGCTGCAATACGTTGAAGGTGTACGGGAGGTAGCGGCAGCCGAGCGA
ACTTTCCGTGAGGCTACTGGAATCTCCGTCATGGTGGCTTCCACTCACGT
GAATCTAAGCAACATGTAAGAGCACAAGCTGCAATACGTTGAAGGTGTAC
GGGAGGTAGCGGCAGCCGAGCGAACTTTCCGTGAGGCTACTGGAATCTCC
GTCATGGTGGCTTCCACTCACGTGAATCTAAGCAACATGTAA
back to top