mRNA_S-dermatodea_contig1091.613.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1091.613.1
Unique NamemRNA_S-dermatodea_contig1091.613.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1091.613.1 vs. uniprot
Match: D8LU99_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU99_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 3.450e-51
Identity = 82/96 (85.42%), Postives = 89/96 (92.71%), Query Frame = 1
Query:    1 MRDWGRVLLAMETRAARKYWQMPNGNGVYDAFFSSHRMVGMVASLEAVQLTWFGDNVEFVHCINMLPFTPITEELLPRDFMEQEWPVLTTAFDNRD 288
            M+DWGRVLLAME RAARKYWQMP  NGVYD++FSSHRMVGMVASLEAVQLTWFGDNVE+VHCINM+PFTPITE+LL RDFMEQEWPVL  AFD R+
Sbjct:  644 MKDWGRVLLAMEVRAARKYWQMPRHNGVYDSYFSSHRMVGMVASLEAVQLTWFGDNVEYVHCINMMPFTPITEDLLHRDFMEQEWPVLEAAFDGRE 739          
BLAST of mRNA_S-dermatodea_contig1091.613.1 vs. uniprot
Match: A0A6H5JC22_9PHAE (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC22_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 4.970e-50
Identity = 80/95 (84.21%), Postives = 88/95 (92.63%), Query Frame = 1
Query:    4 RDWGRVLLAMETRAARKYWQMPNGNGVYDAFFSSHRMVGMVASLEAVQLTWFGDNVEFVHCINMLPFTPITEELLPRDFMEQEWPVLTTAFDNRD 288
            +DWGRVLLAME RAARKYWQMP  NGVYD++FSSHRMVGMVASLEAVQLTWFGDNVE+VHC+NM+PFTPITE+LL RDFMEQEWPVL  AFD R+
Sbjct:  645 KDWGRVLLAMEVRAARKYWQMPRHNGVYDSYFSSHRMVGMVASLEAVQLTWFGDNVEYVHCVNMMPFTPITEDLLHRDFMEQEWPVLEAAFDGRE 739          
BLAST of mRNA_S-dermatodea_contig1091.613.1 vs. uniprot
Match: A0A835YW37_9STRA (Endo-1,3(4)-beta-glucanase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW37_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.320e-35
Identity = 58/96 (60.42%), Postives = 74/96 (77.08%), Query Frame = 1
Query:    1 MRDWGRVLLAMETRAARKYWQMPNGNGVYDAFFSSHRMVGMVASLEAVQLTWFGDNVEFVHCINMLPFTPITEELLPRDFMEQEWPVLTTAFDNRD 288
            +RDWGR+LLA E R+  KYW M N + VYD+ F+S+RMVG+V  L+AV +TWFGDNVE+VH INM+PFTPI+ ELLP  +M +EWP+L TA    D
Sbjct:  169 LRDWGRILLAGELRSTDKYWHMRNDSDVYDSIFASNRMVGVVGGLDAVDVTWFGDNVEYVHGINMMPFTPISAELLPYGYMREEWPMLATALTRED 264          
BLAST of mRNA_S-dermatodea_contig1091.613.1 vs. uniprot
Match: A0A7S2UYV8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYV8_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.260e-31
Identity = 55/92 (59.78%), Postives = 66/92 (71.74%), Query Frame = 1
Query:    7 DWGRVLLAMETRAARKYWQMPNGNGVYDAFFSSHRMVGMVASLEAVQLTWFGDNVEFVHCINMLPFTPITEELLPRDFMEQEWPVLTTAFDN 282
            DWGRVLLAME RAA+ YWQMP G+ VYDA F+ +RMVG V  L+ V  TWFG+N  F+H I  +PFTPITEE L   FM QEW V+ +  D+
Sbjct:   99 DWGRVLLAMEIRAAKMYWQMPQGSKVYDAAFAQNRMVGNVGGLDVVYSTWFGNNPAFIHGIQYMPFTPITEEYLEACFMVQEWEVIKSLADD 190          
BLAST of mRNA_S-dermatodea_contig1091.613.1 vs. uniprot
Match: A0A835ZFG2_9STRA (Endo-1,3(4)-beta-glucanase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFG2_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.190e-28
Identity = 50/91 (54.95%), Postives = 67/91 (73.63%), Query Frame = 1
Query:    1 MRDWGRVLLAMETRAARKYWQMPNGNGVYDAFFSSHRMVGMVASLEAVQLTWFGDNVEFVHCINMLPFTPITEELLPRDFMEQEWPVLTTA 273
            +RDWGRVL  ME RA   YWQMP+G  +YD+ F+S++M G+V +L+ +  TWFGD  E++H INM+PFTPITE LL   F+ +E+PVL  A
Sbjct:  325 LRDWGRVLAQMELRAGHTYWQMPSGTPIYDSNFASNKMAGVVGALDVICNTWFGDKFEYIHAINMMPFTPITEALLRPPFVAEEYPVLARA 415          
BLAST of mRNA_S-dermatodea_contig1091.613.1 vs. uniprot
Match: A0A7S2G3W6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G3W6_9STRA)

HSP 1 Score: 108 bits (271), Expect = 6.560e-28
Identity = 49/94 (52.13%), Postives = 68/94 (72.34%), Query Frame = 1
Query:    1 MRDWGRVLLAMETRAARKYWQMPNGNGVYDAFFSSHRMVGMVASLEAVQLTWFGDNVEFVHCINMLPFTPITEELLPRDFMEQEWPVLTTAFDN 282
            M DWGR+LLA E RAA  YWQM + + VY   F   +MVG+V S +A   TWFG+N E+VH INM+PFTPITEELL ++++++E+P+L    ++
Sbjct:   36 MSDWGRLLLATEMRAAHLYWQMMDEDTVYPKAFKETKMVGIVGSADAKVFTWFGNNPEYVHGINMMPFTPITEELLRKEYVKEEYPILEPRLED 129          
BLAST of mRNA_S-dermatodea_contig1091.613.1 vs. uniprot
Match: A0A836CER9_9STRA (Endo-1,3(4)-beta-glucanase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CER9_9STRA)

HSP 1 Score: 113 bits (282), Expect = 4.510e-27
Identity = 49/83 (59.04%), Postives = 63/83 (75.90%), Query Frame = 1
Query:   40 RAARKYWQMPNGNGVYDAFFSSHRMVGMVASLEAVQLTWFGDNVEFVHCINMLPFTPITEELLPRDFMEQEWPVLTTAFDNRD 288
            R+  KYW M N + VYD+ F+S+RMVG+V  L+AV +TWFGDNVE+VH INM+PFTPI+ ELLP  +M +EWP+L TA    D
Sbjct:  892 RSTDKYWHMRNDSDVYDSIFASNRMVGVVGGLDAVDVTWFGDNVEYVHGINMMPFTPISAELLPYGYMREEWPMLATALTRED 974          
BLAST of mRNA_S-dermatodea_contig1091.613.1 vs. uniprot
Match: A0A3R7V284_9FLAO (Endo-1,3(4)-beta-glucanase n=1 Tax=Crocinitomicaceae bacterium TMED209 TaxID=1986724 RepID=A0A3R7V284_9FLAO)

HSP 1 Score: 111 bits (277), Expect = 2.130e-26
Identity = 48/97 (49.48%), Postives = 74/97 (76.29%), Query Frame = 1
Query:    1 MRDWGRVLLAMETRAARKYWQMPNGNGVYDAFFSSHRMVGMVASLEAVQLTWFGDNVEFVHCINMLPFTPITEELLPRDFMEQEWPVLTTAFDNRDL 291
            +RD GR++LA E R+ ++YWQ+ + +G+Y+  F+S+++VG++ S +    T+FG N EF+HCI MLPFTPITEELL  +++E+E+PVL TA DN  +
Sbjct:  596 LRDLGRLMLATEIRSTQRYWQVDSNDGIYEELFASNKVVGVLWSTKVDYGTFFGANTEFIHCIQMLPFTPITEELLEPEWIEEEYPVLQTALDNPSI 692          
BLAST of mRNA_S-dermatodea_contig1091.613.1 vs. uniprot
Match: A0A356MMD5_9FLAO (Endo-1,3(4)-beta-glucanase (Fragment) n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A356MMD5_9FLAO)

HSP 1 Score: 109 bits (273), Expect = 4.020e-26
Identity = 48/97 (49.48%), Postives = 75/97 (77.32%), Query Frame = 1
Query:    1 MRDWGRVLLAMETRAARKYWQMPNGNGVYDAFFSSHRMVGMVASLEAVQLTWFGDNVEFVHCINMLPFTPITEELLPRDFMEQEWPVLTTAFDNRDL 291
            +RD GR++LA E R+ ++YWQ+ + +G+Y+  F+S+++VG++ S +    T+FG N EF+HCI MLPFTPITEELL  D++E+E+PVL TA +N ++
Sbjct:  367 LRDLGRLMLATEIRSTQQYWQVDSNDGIYEEPFASNKVVGVLWSTKVDYGTFFGANTEFIHCIQMLPFTPITEELLEPDWIEEEYPVLVTALNNPNI 463          
BLAST of mRNA_S-dermatodea_contig1091.613.1 vs. uniprot
Match: A0A355FT92_9FLAO (Endo-1,3(4)-beta-glucanase n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A355FT92_9FLAO)

HSP 1 Score: 109 bits (272), Expect = 1.000e-25
Identity = 48/97 (49.48%), Postives = 74/97 (76.29%), Query Frame = 1
Query:    1 MRDWGRVLLAMETRAARKYWQMPNGNGVYDAFFSSHRMVGMVASLEAVQLTWFGDNVEFVHCINMLPFTPITEELLPRDFMEQEWPVLTTAFDNRDL 291
            +RD GR++LA E R+ +KYWQ+ +G+G+YD  ++S+++VG++ S +    T+FG N EF+HCI MLPFTPITE+LL   ++++E+PVL TA DN  +
Sbjct:  541 IRDLGRLMLATEIRSTQKYWQVDSGDGIYDEPYASNKVVGVLWSTKVDYGTFFGANTEFIHCIQMLPFTPITEDLLEPAWIDEEYPVLETALDNPSI 637          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1091.613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU99_ECTSI3.450e-5185.42Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sili... [more]
A0A6H5JC22_9PHAE4.970e-5084.21Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sp. ... [more]
A0A835YW37_9STRA1.320e-3560.42Endo-1,3(4)-beta-glucanase n=1 Tax=Tribonema minus... [more]
A0A7S2UYV8_9STRA1.260e-3159.78Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa... [more]
A0A835ZFG2_9STRA2.190e-2854.95Endo-1,3(4)-beta-glucanase n=1 Tax=Tribonema minus... [more]
A0A7S2G3W6_9STRA6.560e-2852.13Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A836CER9_9STRA4.510e-2759.04Endo-1,3(4)-beta-glucanase n=2 Tax=Tribonema minus... [more]
A0A3R7V284_9FLAO2.130e-2649.48Endo-1,3(4)-beta-glucanase n=1 Tax=Crocinitomicace... [more]
A0A356MMD5_9FLAO4.020e-2649.48Endo-1,3(4)-beta-glucanase (Fragment) n=1 Tax=Flav... [more]
A0A355FT92_9FLAO1.000e-2549.48Endo-1,3(4)-beta-glucanase n=1 Tax=Flavobacteriale... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1091contigS-dermatodea_contig1091:15220..16453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.5
Seed ortholog evalue2.4e-44
Seed eggNOG ortholog2880.D8LU99
KEGG koko:K01180
EggNOG free text desc.chitin catabolic process
EggNOG OGsCOG5498@1,KOG2254@2759
EC3.2.1.6
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size293
Cds size291
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1091.613.1prot_S-dermatodea_contig1091.613.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1091 15220..16453 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924180.3402016-CDS-S-dermatodea_contig1091:15219..153001622924180.3402016-CDS-S-dermatodea_contig1091:15219..15300Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1091 15220..15300 +
1694079073.2920039-CDS-S-dermatodea_contig1091:15219..153001694079073.2920039-CDS-S-dermatodea_contig1091:15219..15300Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1091 15220..15300 +
1622924180.3518333-CDS-S-dermatodea_contig1091:15708..157821622924180.3518333-CDS-S-dermatodea_contig1091:15708..15782Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1091 15709..15782 +
1694079073.3023543-CDS-S-dermatodea_contig1091:15708..157821694079073.3023543-CDS-S-dermatodea_contig1091:15708..15782Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1091 15709..15782 +
1622924180.3598099-CDS-S-dermatodea_contig1091:16317..164531622924180.3598099-CDS-S-dermatodea_contig1091:16317..16453Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1091 16318..16453 +
1694079073.3106735-CDS-S-dermatodea_contig1091:16317..164531694079073.3106735-CDS-S-dermatodea_contig1091:16317..16453Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1091 16318..16453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1091.613.1

>prot_S-dermatodea_contig1091.613.1 ID=prot_S-dermatodea_contig1091.613.1|Name=mRNA_S-dermatodea_contig1091.613.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=97bp
MRDWGRVLLAMETRAARKYWQMPNGNGVYDAFFSSHRMVGMVASLEAVQL
TWFGDNVEFVHCINMLPFTPITEELLPRDFMEQEWPVLTTAFDNRDL
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mRNA from alignment at S-dermatodea_contig1091:15220..16453+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1091.613.1 ID=mRNA_S-dermatodea_contig1091.613.1|Name=mRNA_S-dermatodea_contig1091.613.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1234bp|location=Sequence derived from alignment at S-dermatodea_contig1091:15220..16453+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGGGACTGGGGCAGGGTGCTCCTGGCGATGGAGACGCGAGCGGCGCG CAAGTATTGGCAGATGCCCAACGGCAACGGGGTGAGTGCCACCCGTTTTA TTTTACGTTCTGGAAGCAGAAGTCAGGGGGCGTGCAAAGTCGACTTTGTG TATTGTGCGATGTGTGCCATGAGTGCGAGACATTCGGTTTCGCCCGTGAG TGAGTGCGGGCGTGCGAAAGGATCGCGAACCAGAAAGTGTGTTTCCGAGA GAAAAAAGGAACACGGGGGAACACAAGAGGATGGAAAGAAGTGAAGAGCA ATTATCTGTGATGAGGGCTTTAGCATGCTGGCGGTTATGCCCTCTCGCCT TCGGGGGTACCCTCCCCCCGCCCCACCCCAGCGGTGCGCATCTGTCGCTC CTCCATCGCTCGCACCGAGTGGAGACATCGCTTGCTTGCTTTCACGCTCA CACACCGTCGTTTGTCCTTCACAACCAATGTATGACCAGGTGTACGACGC TTTCTTCTCGTCCCATCGGATGGTCGGAATGGTAGCGTCGCTAGAAGCGG TGCAGCTCACCTGGTAAGCGAGCAAATTGGACGGGGAGGGGAGGTTGGAG AGCGTCTCGCCTTGCACGTGGTGGCTGAAGACCGTGGGCGAGTGTATATG TGTGCGTTTGTTTTAAGGTGCCATTTGTTAAGCGGTTTGGCTGCCCGAGA CCGGCGATGCGCTCGCTGCTTTCTGATACTTCTGTGTCTCTTTTGGACGT AGTAGAAGGACTACTGCCGCGGGAGGCACCACAGTGTAAGCCTAGAAAAA ATTATTGGATCCTGACCAGCGGCGGTGGTGTTATCAACGCGAACGTGTTG ACAAGGAGGCAACCGTGGGACATGGGATTTAGCTAATATTTTGTTGATCT GGGACGATAGAGACTATTTTTATGGATTCTATTCAACGGTGTATGGATTC AAAAGGCGTTCAACGCGAGCGAGGGCTGCGTTCTACCTGCCCGCAATGAG ACCGACTACCCTTCCTGCCCCCCCCCCCCCCTCCCCGACTGTGCCTGCTC ACGCTATGCTCACGACGGCACATGCTTGCTTCGACGTGTTTGCCATAGGT TCGGCGATAACGTCGAGTTCGTGCATTGCATCAACATGCTCCCCTTCACA CCCATAACGGAGGAGCTGCTGCCTCGCGATTTCATGGAGCAGGAGTGGCC AGTTCTGACAACCGCGTTTGACAACCGCGACCTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1091:15220..16453+

>mRNA_S-dermatodea_contig1091.613.1 ID=mRNA_S-dermatodea_contig1091.613.1|Name=mRNA_S-dermatodea_contig1091.613.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at S-dermatodea_contig1091:15220..16453+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGGGACTGGGGCAGGGTGCTCCTGGCGATGGAGACGCGAGCGGCGCG
CAAGTATTGGCAGATGCCCAACGGCAACGGGATGAGGGACTGGGGCAGGG
TGCTCCTGGCGATGGAGACGCGAGCGGCGCGCAAGTATTGGCAGATGCCC
AACGGCAACGGGGTGTACGACGCTTTCTTCTCGTCCCATCGGATGGTCGG
AATGGTAGCGTCGCTAGAAGCGGTGCAGCTCACCTGGTGTACGACGCTTT
CTTCTCGTCCCATCGGATGGTCGGAATGGTAGCGTCGCTAGAAGCGGTGC
AGCTCACCTGGTTCGGCGATAACGTCGAGTTCGTGCATTGCATCAACATG
CTCCCCTTCACACCCATAACGGAGGAGCTGCTGCCTCGCGATTTCATGGA
GCAGGAGTGGCCAGTTCTGACAACCGCGTTTGACAACCGCGACCTGGTTC
GGCGATAACGTCGAGTTCGTGCATTGCATCAACATGCTCCCCTTCACACC
CATAACGGAGGAGCTGCTGCCTCGCGATTTCATGGAGCAGGAGTGGCCAG
TTCTGACAACCGCGTTTGACAACCGCGACCTG
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