mRNA_S-dermatodea_contig10902.605.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10902.605.1
Unique NamemRNA_S-dermatodea_contig10902.605.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig10902.605.1 vs. uniprot
Match: A0A6H5KNT1_9PHAE (Carrier domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KNT1_9PHAE)

HSP 1 Score: 419 bits (1077), Expect = 2.510e-136
Identity = 204/239 (85.36%), Postives = 218/239 (91.21%), Query Frame = 1
Query:    1 QMSDIKSMFSGGASWPELNWVVTDSLPLPPSDAQTNGGFQKPDPADVAFLQYTSGSTSEPKGVMITHANLADNLTLIVNGLSAVDDTVVVGWLPQYHDMGLIGSVLALLFCGGSGFYMSPVSFIKRPALWVELISRHRGTHMQAPNFAYGLTARKFMALEQQPQLDLSCVRHMINAAEPVDTASIDRFYAVFEAHGLKRGVIFPTYGLAEHTVYVCSNGRDRLVVDRMLLETERKVGAV 717
            +M+DIK MFSGGASWPELNWVVTDSL    +  +  G F  PDP DVAF+QYTSGSTSEPKGVMITH+NLA NL LI+ GLSAVDDTVVV WLPQYHDMGLIGSVLALLF GGSGFYMSPVSFIKRPALWVELISRHRGTHMQAPNFAYGLTARKF+AL+ QP+LDLSCVRHMINAAEPVDTASIDRFY+VFEAHGLKRGVIFPTYGLAEHTVYVCSNG+DRLVVDR++LETERKV  V
Sbjct:  130 KMADIKGMFSGGASWPELNWVVTDSLASVTAADEDTGRFSVPDPTDVAFIQYTSGSTSEPKGVMITHSNLAHNLKLILAGLSAVDDTVVVAWLPQYHDMGLIGSVLALLFSGGSGFYMSPVSFIKRPALWVELISRHRGTHMQAPNFAYGLTARKFLALDPQPKLDLSCVRHMINAAEPVDTASIDRFYSVFEAHGLKRGVIFPTYGLAEHTVYVCSNGKDRLVVDRVMLETERKVRPV 368          
BLAST of mRNA_S-dermatodea_contig10902.605.1 vs. uniprot
Match: A0A7S2SRR8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRR8_9STRA)

HSP 1 Score: 279 bits (714), Expect = 3.600e-92
Identity = 137/186 (73.66%), Postives = 151/186 (81.18%), Query Frame = 1
Query:  151 QYTSGSTSEPKGVMITHANLADNLTLIVNGLSAVDDTVVVGWLPQYHDMGLIGSVLALLFCGGSGFYMSPVSFIKRPALWVELISRHRGTHMQAPNFAYGLTARKFMALEQQPQLDLSCVRHMINAAEPVDTASIDRFYAVFEAHGLKRGVIFPTYGLAEHTVYVCSNGRDRLVVDRMLLETERKV 708
            QYTSGSTSEPKGV+I+H NLA NL +IV+ L A   T+VV WLP YHDMGLIGS L  LFCGGSGFY+SP+SFI+ P LWVELISRHRGTHMQAPNFAY L ARK++A    P LDLSCV+HMINAAEPV    I+RFYAVFEA GL R V FPTYGLAEHTV+VCSNGR  L VD+ LLE ERKV
Sbjct:    1 QYTSGSTSEPKGVVISHRNLAHNLKIIVHNLQASTSTIVVSWLPLYHDMGLIGSYLGCLFCGGSGFYLSPLSFIRNPVLWVELISRHRGTHMQAPNFAYALVARKYLARRPAPTLDLSCVQHMINAAEPVHELDIERFYAVFEASGLPRRV-FPTYGLAEHTVFVCSNGRQVLTVDKSLLERERKV 185          
BLAST of mRNA_S-dermatodea_contig10902.605.1 vs. uniprot
Match: A0A7S2HQ97_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HQ97_9STRA)

HSP 1 Score: 296 bits (757), Expect = 8.210e-92
Identity = 142/240 (59.17%), Postives = 182/240 (75.83%), Query Frame = 1
Query:    1 QMSDIKSMFS---GGASWPELNWVVTDSLPLPPSDAQTNGGFQKPDPA--DVAFLQYTSGSTSEPKGVMITHANLADNLTLIVNGLSAVDDTVVVGWLPQYHDMGLIGSVLALLFCGGSGFYMSPVSFIKRPALWVELISRHRGTHMQAPNFAYGLTARKFMALEQQPQLDLSCVRHMINAAEPVDTASIDRFYAVFEAHGLKRGVIFPTYGLAEHTVYVCSNGRDRLVVDRMLLETERK 705
            ++S ++S FS   G  +WP++ W+VTDS+      A+   GF+   P+    AFLQ+TSGSTSEPKGV+++H NLA NL L+V G+ A + TV V WLP YHDMGLIGS L LL+ GG+G YMSPVSF++ P LW+E +S++RGTH  APNFAYGLTARKF+A   QP LDLSCV HMINAAEP+    ++RFYAVFE  GLKRGVIFPTYGLAEHT++VCSNG+  L V++ +LE+E++
Sbjct:  140 KLSGVQSFFSKDSGNGTWPDIKWIVTDSVI---QAAKGGDGFESCSPSLDTPAFLQFTSGSTSEPKGVIVSHGNLAHNLDLMVTGVGASETTVQVSWLPLYHDMGLIGSYLGLLYSGGTGVYMSPVSFVRNPPLWMETMSKYRGTHASAPNFAYGLTARKFLAKRPQPLLDLSCVEHMINAAEPIHWIDVERFYAVFEQAGLKRGVIFPTYGLAEHTLFVCSNGKQVLTVNKTILESEQR 376          
BLAST of mRNA_S-dermatodea_contig10902.605.1 vs. uniprot
Match: A0A7S2HQA0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HQA0_9STRA)

HSP 1 Score: 296 bits (757), Expect = 5.730e-90
Identity = 142/240 (59.17%), Postives = 182/240 (75.83%), Query Frame = 1
Query:    1 QMSDIKSMFS---GGASWPELNWVVTDSLPLPPSDAQTNGGFQKPDPA--DVAFLQYTSGSTSEPKGVMITHANLADNLTLIVNGLSAVDDTVVVGWLPQYHDMGLIGSVLALLFCGGSGFYMSPVSFIKRPALWVELISRHRGTHMQAPNFAYGLTARKFMALEQQPQLDLSCVRHMINAAEPVDTASIDRFYAVFEAHGLKRGVIFPTYGLAEHTVYVCSNGRDRLVVDRMLLETERK 705
            ++S ++S FS   G  +WP++ W+VTDS+      A+   GF+   P+    AFLQ+TSGSTSEPKGV+++H NLA NL L+V G+ A + TV V WLP YHDMGLIGS L LL+ GG+G YMSPVSF++ P LW+E +S++RGTH  APNFAYGLTARKF+A   QP LDLSCV HMINAAEP+    ++RFYAVFE  GLKRGVIFPTYGLAEHT++VCSNG+  L V++ +LE+E++
Sbjct:  140 KLSGVQSFFSKDSGNGTWPDIKWIVTDSVI---QAAKGGDGFESCSPSLDTPAFLQFTSGSTSEPKGVIVSHGNLAHNLDLMVTGVGASETTVQVSWLPLYHDMGLIGSYLGLLYSGGTGVYMSPVSFVRNPPLWMETMSKYRGTHASAPNFAYGLTARKFLAKRPQPLLDLSCVEHMINAAEPIHWIDVERFYAVFEQAGLKRGVIFPTYGLAEHTLFVCSNGKQVLTVNKTILESEQR 376          
BLAST of mRNA_S-dermatodea_contig10902.605.1 vs. uniprot
Match: A0A835Z6I3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6I3_9STRA)

HSP 1 Score: 283 bits (723), Expect = 6.510e-89
Identity = 143/236 (60.59%), Postives = 166/236 (70.34%), Query Frame = 1
Query:   34 GASWPELNWVVTDSLPLPPSDAQTNGGFQKPDPADVAFLQYTSGSTSEPKGVMITHANLADNLTLIVNGLSAVDDTVVVGWLPQYHDMGLIGSVLALLFCGGSGFYMSPVSFIKRPALWVELISRHRGTHMQAPNFAYGLTARKFMALEQQP---------QLDLSCVRHMINAAEPVDTASIDRFYAVFEAHGLKRGVIFPTYGLAEHTVYVCSNGRDRLVVDRMLLETERKVGA 714
            G S PE+ WVVTDSLP   SD         P P D+AFLQYTSGSTS PKGVM+THANLA NL  I   + A +DTV + WLPQYHDMGLIG+ L  L+CGG GFY+SP +FI+RPALW +L+SRHR TH QAP+FA+GL ARK+ +L QQ          +LDLS ++H+INAAEPVD  S+DRF AVF  HGL  GVI PTYGLAEHTV VC+NG  RLV  R  LE  R   A
Sbjct:   10 GLSLPEVRWVVTDSLPAI-SDVGATAALGAPKPEDLAFLQYTSGSTSAPKGVMLTHANLAHNLAFITRAIGADEDTVELSWLPQYHDMGLIGAYLGCLYCGGRGFYLSPAAFIRRPALWPQLLSRHRVTHTQAPSFAFGLAARKYASLAQQQGDVPAAPRERLDLSRLKHVINAAEPVDPVSMDRFIAVFTPHGLPAGVIRPTYGLAEHTVCVCTNGARRLVAHRAALEGARSTAA 244          
BLAST of mRNA_S-dermatodea_contig10902.605.1 vs. uniprot
Match: A0A7S2SQC3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQC3_9STRA)

HSP 1 Score: 289 bits (739), Expect = 8.430e-89
Identity = 145/238 (60.92%), Postives = 171/238 (71.85%), Query Frame = 1
Query:    1 QMSDIKSMFSGGASWPELNWVVTDSLPL---PPSDAQTNGGFQKPDPADVAFLQYTSGSTSEPKGVMITHANLADNLTLIVNGLSAVDDTVVVGWLPQYHDMGLIGSVLALLFCGGSGFYMSPVSFIKRPALWVELISRHRGTHMQAPNFAYGLTARKFMALEQQPQ----LDLSCVRHMINAAEPVDTASIDRFYAVFEAHGLKRGVIFPTYGLAEHTVYVCSNGRDRLVVDRMLLE 693
            +M+DI++MFS  A WPEL WVV D LP    PP    +      P P +VAFLQYTSGSTSEPKGVMI+  NL  NL+ IV+ L A D TVVV WLPQYHDMGLIGS L  LFCGGSG+Y+SP SF+K P LW++ +SR+RGTH+QAPNFAY LT R++  L    +    LDLS VRHMINAAEPV    +  FY  F  HGL RGV++PTYGLAEHTV+VCS GR  L VD++LLE
Sbjct:  165 KMADIRNMFSSEAKWPELCWVVVDDLPSYRSPPHVPVSETSGSAP-PEEVAFLQYTSGSTSEPKGVMISQGNLWHNLSSIVHELEADDSTVVVSWLPQYHDMGLIGSYLGCLFCGGSGYYLSPFSFLKNPLLWLQSVSRYRGTHLQAPNFAYALTVRRYRPLTDAARGTLNLDLSSVRHMINAAEPVSAGDLAAFYECFSPHGLPRGVVYPTYGLAEHTVFVCSGGRTVLQVDKVLLE 401          
BLAST of mRNA_S-dermatodea_contig10902.605.1 vs. uniprot
Match: B7GDP1_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GDP1_PHATC)

HSP 1 Score: 281 bits (719), Expect = 8.060e-87
Identity = 143/250 (57.20%), Postives = 176/250 (70.40%), Query Frame = 1
Query:    1 QMSDIKSMFSG----GASWPE-LNWVVTDSL---------PLPPSDAQTNGGFQKPDPADVAFLQYTSGSTSEPKGVMITHANLADNLTLIVNGLSAVDDTVVVGWLPQYHDMGLIGSVLALLFCGGSGFYMSPVSFIKRPALWVELISRHRGTHMQAPNFAYGLTARKFMALEQQPQLDLSCVRHMINAAEPVDTASIDRFYAVFEAHGLKRGVIFPTYGLAEHTVYVCSNGRDRLVVDRMLLETERKV 708
            +M+ I+ +F+      + WP+ L+W  TD+L         P PPSD            + VAFLQYTSGSTSEPKGVMITH NLA NLT+I N   A DDTVVV WLPQYHDMGLIGS L +LFCGG+G+Y+SP+SF++RP +W+E +SR+R TH+QAPNFA+ LTARKF       +LDLS VRH+INAAEPVD  SID FY +F  +G    VI+PTYGLAEHTV+VCS G+ RL VD+  LE + KV
Sbjct:  136 KMAGIRDVFTKFQRPTSGWPDDLDWTTTDTLKEPRNSVNLPQPPSDR-----------SQVAFLQYTSGSTSEPKGVMITHGNLAHNLTIITNDSQAKDDTVVVSWLPQYHDMGLIGSYLGVLFCGGTGYYLSPLSFLQRPMVWIEAVSRYRATHLQAPNFAFKLTARKFSIDASNTELDLSSVRHVINAAEPVDEESIDNFYRIFGKYGFAN-VIYPTYGLAEHTVFVCSGGKQRLTVDKAKLEIDAKV 373          
BLAST of mRNA_S-dermatodea_contig10902.605.1 vs. uniprot
Match: A0A7R9U2M5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2M5_9STRA)

HSP 1 Score: 281 bits (719), Expect = 1.200e-86
Identity = 143/224 (63.84%), Postives = 167/224 (74.55%), Query Frame = 1
Query:   43 WPE-LNWVVTDSLPLPPSDAQTNGGFQK-PDPADVAFLQYTSGSTSEPKGVMITHANLADNLTLIVNGLSAVDDTVVVGWLPQYHDMGLIGSVLALLFCGGSGFYMSPVSFIKRPALWVELISRHRGTHMQAPNFAYGLTARKFMAL--EQQPQLDLSCVRHMINAAEPVDTASIDRFYAVFEAHGLKRGVIFPTYGLAEHTVYVCSNGRDRLVVDRMLLETER 702
            WP+ L WV+TD+       A  +G   +  D  DVAFLQ+TSGSTSEPKGV IT  NLA NL  I   L AV DTVVV WLPQYHDMGLIG+ L +LFCGG G+YMSP++FIKRP LW+ELIS++RGTHMQAPNF Y L ARKF AL  +Q+P LDLSCVRHMINAAEPV   +I+ FY  F ++GL R V+FPTYGLAEHTV+VCS G+ RLVV +  LE  R
Sbjct:  144 WPDSLRWVITDTGGRKTKKAVVDGNLSEGADSNDVAFLQFTSGSTSEPKGVQITFGNLAHNLKAITTDLQAVQDTVVVSWLPQYHDMGLIGAYLGILFCGGHGYYMSPLTFIKRPVLWMELISKYRGTHMQAPNFTYILCARKFKALPEKQRPSLDLSCVRHMINAAEPVTAGAIEGFYDTFASYGLGR-VVFPTYGLAEHTVFVCSGGQKRLVVSKRALENGR 366          
BLAST of mRNA_S-dermatodea_contig10902.605.1 vs. uniprot
Match: A0A7S3L309_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L309_9STRA)

HSP 1 Score: 276 bits (707), Expect = 1.870e-85
Identity = 145/247 (58.70%), Postives = 176/247 (71.26%), Query Frame = 1
Query:    1 QMSDIKSMFS-----GGASWPE-LNWVVTDSLPLPPSDAQTNGGFQ--KPDPADVAFLQYTSGSTSEPKGVMITHANLADNLTLIVNGLSAVDDTVVVGWLPQYHDMGLIGSVLALLFCGGSGFYMSPVSFIKRPALWVELISRHRGTHMQAPNFAYGLTARKFMALEQQPQLDLSCVRHMINAAEPVDTASIDRFYAVFEAHGLKRGVIFPTYGLAEHTVYVCSNGRDRLVVDRMLLETERKVGAV 717
            +M+ I  +F      G A+WP+ L WVVTD+     S   T   FQ   PDP+D+AFLQYTSGSTS+PKGVMITHANL  NL++I N L A +DT+VV WLPQYHDMGLIGS L  L+CGG G+YMSP+SFI+RP LW+E IS+++ TH+QAPNFA+ LTARKF   E +  LDLS VRH+INAAEPVD  SI+ FY  F   GL + VI+PTYGLAE TV+VCS G  RL V +  LE   +V  V
Sbjct:   70 KMAGITQVFGKLKNKGAAAWPDNLKWVVTDTT----SKVSTADSFQIVNPDPSDIAFLQYTSGSTSDPKGVMITHANLGHNLSIITNELKATNDTIVVSWLPQYHDMGLIGSYLGALYCGGQGYYMSPLSFIQRPMLWIEAISKYKATHLQAPNFAFKLTARKFDKGEYR-DLDLSSVRHIINAAEPVDEDSIESFYTAFCPFGLNK-VIYPTYGLAESTVFVCSGGTQRLTVVKTELEVNGRVEIV 310          
BLAST of mRNA_S-dermatodea_contig10902.605.1 vs. uniprot
Match: A0A067BNK6_SAPPC (AMP-binding domain-containing protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BNK6_SAPPC)

HSP 1 Score: 263 bits (673), Expect = 4.600e-83
Identity = 136/233 (58.37%), Postives = 162/233 (69.53%), Query Frame = 1
Query:   16 KSMFSGGASWPELNWVVTDSLPLPPSDAQTNGGFQKPDPADVAFLQYTSGSTSEPKGVMITHANLADNLTLIVNGLSAVDDTVVVGWLPQYHDMGLIGSVLALLFCGGSGFYMSPVSFIKRPALWVELISRHRGTHMQAPNFAYGLTARKFMALEQQPQLDLSCVRHMINAAEPVDTASIDRFYAVFEAHGLKRGVIFPTYGLAEHTVYVCSNGRD--RLVVDRMLLETERKV 708
            K  FS    WP+L+WV TD L   P+ +        P    +AFLQYTSGSTS+PKGVMI+H NL  NL LIV+ L+A  D VVV WLPQYHDMGLIG+ L +LF GG+G Y+SP SFIK P+LW+ LI++H+ TH+QAPNFAY L ARKF +    P LDLS VRHMIN AEPVD  +ID FYA F   GL RGVI PTYGLAEHTVYVC +      L V + +LE+E K+
Sbjct:  140 KMTFSERYPWPDLDWVETDRLIHAPAPSSMT--LAAPSADAIAFLQYTSGSTSDPKGVMISHGNLTSNLHLIVDALAARQDAVVVSWLPQYHDMGLIGAYLGILFSGGNGVYLSPFSFIKNPSLWIALIAKHKATHLQAPNFAYALCARKFQS--PSPTLDLSSVRHMINGAEPVDVHAIDAFYATFSPLGLPRGVIRPTYGLAEHTVYVCDSPPTLTHLRVVKSVLESEDKM 368          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10902.605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNT1_9PHAE2.510e-13685.36Carrier domain-containing protein n=2 Tax=Ectocarp... [more]
A0A7S2SRR8_9STRA3.600e-9273.66Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2HQ97_9STRA8.210e-9259.17Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2HQA0_9STRA5.730e-9059.17Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835Z6I3_9STRA6.510e-8960.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SQC3_9STRA8.430e-8960.92Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
B7GDP1_PHATC8.060e-8757.20Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7R9U2M5_9STRA1.200e-8663.84Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3L309_9STRA1.870e-8558.70Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A067BNK6_SAPPC4.600e-8358.37AMP-binding domain-containing protein (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10902contigS-dermatodea_contig10902:1038..5238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score419.5
Seed ortholog evalue1.1e-114
Seed eggNOG ortholog2880.D8LBI2
GOsGO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009273,GO:0009987,GO:0042546,GO:0044085,GO:0044238,GO:0071554,GO:0071704,GO:0071766,GO:0071840,GO:1901576
EggNOG free text desc.fatty acid biosynthetic process
EggNOG OGsCOG0318@1,KOG3628@2759
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAcyl carrier protein-like
Ec32 orthologEc-27_003890.1
Exons5
Model size717
Cds size714
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10902.605.1prot_S-dermatodea_contig10902.605.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10902 1038..5235 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924179.7854989-CDS-S-dermatodea_contig10902:1037..11581622924179.7854989-CDS-S-dermatodea_contig10902:1037..1158Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10902 1038..1158 -
1694079072.9066792-CDS-S-dermatodea_contig10902:1037..11581694079072.9066792-CDS-S-dermatodea_contig10902:1037..1158Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10902 1038..1158 -
1622924179.799595-CDS-S-dermatodea_contig10902:1753..19201622924179.799595-CDS-S-dermatodea_contig10902:1753..1920Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10902 1754..1920 -
1694079072.918242-CDS-S-dermatodea_contig10902:1753..19201694079072.918242-CDS-S-dermatodea_contig10902:1753..1920Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10902 1754..1920 -
1622924179.8107743-CDS-S-dermatodea_contig10902:2227..23711622924179.8107743-CDS-S-dermatodea_contig10902:2227..2371Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10902 2228..2371 -
1694079072.9291942-CDS-S-dermatodea_contig10902:2227..23711694079072.9291942-CDS-S-dermatodea_contig10902:2227..2371Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10902 2228..2371 -
1622924179.8192236-CDS-S-dermatodea_contig10902:3233..33551622924179.8192236-CDS-S-dermatodea_contig10902:3233..3355Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10902 3234..3355 -
1694079072.9391072-CDS-S-dermatodea_contig10902:3233..33551694079072.9391072-CDS-S-dermatodea_contig10902:3233..3355Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10902 3234..3355 -
1622924179.827466-CDS-S-dermatodea_contig10902:5075..52351622924179.827466-CDS-S-dermatodea_contig10902:5075..5235Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10902 5076..5235 -
1694079072.949476-CDS-S-dermatodea_contig10902:5075..52351694079072.949476-CDS-S-dermatodea_contig10902:5075..5235Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10902 5076..5235 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924179.8400736-UTR-S-dermatodea_contig10902:5235..52381622924179.8400736-UTR-S-dermatodea_contig10902:5235..5238Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10902 5236..5238 -
1694079072.9591308-UTR-S-dermatodea_contig10902:5235..52381694079072.9591308-UTR-S-dermatodea_contig10902:5235..5238Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10902 5236..5238 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10902.605.1

>prot_S-dermatodea_contig10902.605.1 ID=prot_S-dermatodea_contig10902.605.1|Name=mRNA_S-dermatodea_contig10902.605.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=238bp
MSDIKSMFSGGASWPELNWVVTDSLPLPPSDAQTNGGFQKPDPADVAFLQ
YTSGSTSEPKGVMITHANLADNLTLIVNGLSAVDDTVVVGWLPQYHDMGL
IGSVLALLFCGGSGFYMSPVSFIKRPALWVELISRHRGTHMQAPNFAYGL
TARKFMALEQQPQLDLSCVRHMINAAEPVDTASIDRFYAVFEAHGLKRGV
IFPTYGLAEHTVYVCSNGRDRLVVDRMLLETERKVGAV
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mRNA from alignment at S-dermatodea_contig10902:1038..5238-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10902.605.1 ID=mRNA_S-dermatodea_contig10902.605.1|Name=mRNA_S-dermatodea_contig10902.605.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4201bp|location=Sequence derived from alignment at S-dermatodea_contig10902:1038..5238- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGATGTCCGACATCAAGAGCATGTTCTCTGGCGGCGCCTCGTGGCCGGA GCTGAACTGGGTCGTCACGGACTCCCTTCCCCTGCCGCCGAGCGACGCGC AAACGAACGGAGGGTTCCAGAAGCCGGACCCGGCGGACGTCGCGTTCCTC CAGTACACGTCAGGTGTGTACATACATATATATTTAAAACAAGTGCCAGT ATCGATACGATCAATCGAGCTCTTCTAACATTAATATAGTTGGTCTACAA TTCCGCTGCTACGAAAGGAATACAAACTAAATAAAACTATAGACTACCTG GTTCTATGTATTAACCTTAACTGTGTAGTGGCTCGTCCATGTAGGAAGAG AGGTTTTATCGTATGATGTATTAGGAGTTTGTATACGAGGGCGGAGGGGC CGAGCCATCAGTTTCTGGCGCACTCTAAAAACTTACCTTTCTCAACCAAA CACTCCAACGCACTCTGTGTTGTTCTTTTTGTGGGAGGGGCACGTGAGCG AGCGCGAGCGCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT CCGCGACACACACACACGCACGCACACGCCGCACGCACACCTTCCCGCCA TTCTGTTTTTGTACATTTCGAAGTCCAGCCCTTTGTTTTTTCGTGGAGAG CTAGAGCTGTACAAGTACTCGTGTTAATTTATCGCAGAGATCATAAAGCG TTGGCACCCTACAGCAGTATGATACCCGTTTGGTGTTGTTTGGGGGGTTC GGCCGGCTGCCTTTCTGCCTGCCTTCCCAAGCGGATTTGCGCATGGTCTT TGGGCTGGGGCTGCACGGGGTGCGCGTGCATTCTATCTACTGCTGTGCGG CGCGCATAGAGGCGATTTTTGAGGAGCAATGAGTATTGCCGGTTTTTCCG ATGGGATGCGAAGGCCGAGCGGTTGTCGAGCAGTGCAGTTTGAGTGGTCA AGACAAGCGACGAGCCAGCCAATTGTTGATGATTGAAAATCTCCTTCGTG TCATGTGCTGGAAGGTGAAGCACAACTATATTATTAATAGATGGCTGTGG CTCAACGCGCATGCCCCCCTCACGAGAGAACGCGCCTCGTCTCTGCCCGT TGCTGTGTCTACGCGGGCACTAAATACTAAATATGAGATGGCCACATGAA GCCACACACGTAAGACCCTCAGTAGCGCGTCCAGCGCGGCACGGCTTGAT GATGTGGGAGGCGGAAATTAGCCCCAATAAATGTCAGCGCAAAGGCTTTG GTGCCCGTTTTGTGCTCAAGGGGAACGCCGTGCTGCTGAAGGCAAGCGTG TGTTGGTAAAAAGCCGGCATCTCTTGAGGACCCTTGCACAAAATCCACAC CATTAATAACCCTTTCTGGGGCTGAGTGTATAGTAGTGTGTGTATGTACC ATACGTTTTTGCGTCGAATATCAGCACTGCGGGTACGATGTGTCGCTGTG ACGGGTGGGTGGGTGGGTGCACGCACAAGCGCAACACCACGGGCTCCGTG CATGCAAGCTGGGCGCGGCAAATTTATCGTCATTTTCACACCGCGGCTAC TACTTGTATCTGTACGGCGAGGAGAATATAGTATATACTGTAGTATTGTT TATAACAGTATATCGTAGCCACCGTTCGGTCGCTATTCGATGTGAAATAT CCTATATACGGTTCGGGAAGGTGGCTATTCCCCGAAAACAACCTCGTCTT CTCGAAAGGGCTAAAGGAAGCATGGCACGGCGCGGCGCGGCGCGGCGCGT CGGTGAAGGCTTATTCACGAAAGAAGAAGATATCGTTGCTCGACCGATTC ACAAATCCGCGTGTTTTGTGCTCATTTTCCCCCGTGCTGCGCGCGCACTC CGCTCCCTGGCCTTTCGCGGGGGCAACGCTCAGGGTCGACGAGCGAACCG AAGGGAGTGATGATCACCCACGCCAACCTCGCGGACAACCTGACGCTGAT CGTGAACGGGCTAAGCGCCGTGGATGACACGGTCGTGGTGGGCTGGCTCC CACAGGTGGGAAGATGATACCATACAGCTATTGTATCATATTGTATCAAT TGGAACTATCATAGTGGGTAGCCACGGCGACGCCCGTGAGGGGTGCGTTG GCACAGATTTACTTATCTGTAAGGTACCACTCTAAAATCCCTATGGCATT TAGCATCACGAGTTGTATAGGAAATTCGGCATCAAATCTCAACTCTAAAT CGCTATTACATAACGTGTGAAGCTGTCTTAATTAATCGAAACATAAGAAG TATACTGGTACCTGTAGCTTGTGTTTTTTTTGTTTTGTAACGCTACAAAT GGTATGAGAGCGTTTCGTTTTCTCTTTTCCGTTCTCTTTTTTTGATTCTA TTTTTTTACGTTTTGCCTTCAGTCATAAGAAGCTCGATGCGCCCGCGCAC GCATTTTGCTACCAAAACACCAGGCGGTTTCGACGCTGTGCGCTACAGCT AGGATACAGCTTCCACGTGTCTCGTCGCGAGAGCATTTGTGCTGCGTGCT GCGTGTTTTTTATGTAGTAGGAATTTATTCCGCGGTCGAAAACGCCCGGC TATGCCTACAAGCTATGCCTACAAGCGCGCTACAATAGTGTACTGCTGAA CGTAACCCCAGCATTTTTTGCCACTCCAGGCATTTTTCATCTTCTTGTTC AACCCAAGAACGACATAATAACGACATACAGTAATAGCTGGCGGCGGCGG ATCGCCAGCGAGCACACACCATCCGAACCTTTTCTGCTGGGAGGGACGGC TGTATTATTGCGTGTGTTTCGGCCGAGCTCTCGCAAAGCTAAACAGCTCT CCACGTGCCTTGCTTGCCCGCCCCCCGCCCCGCCCACTATCTGTTATCCT CCCCGTCGCTCCAAAAGTATCACGACATGGGCCTGATTGGCTCGGTGCTC GCCCTCCTCTTCTGCGGAGGGTCGGGTTTCTACATGTCCCCCGTGTCGTT CATCAAGCGCCCCGCGCTCTGGGTGGAGCTCATCTCGCGCCACCGTGGGA CGCACATGCAGGTATGACATCATACGCACGGTTCCCGTAAATAGCGCACT TACACGGCAAAGCTTGGGTGCAAGCTTAAGCTTTAGACGGGGGGGTGTAC GGTAGCTTCGAGAGCTCCGAACGCGCGCACGCAGCACCGCCTTCCTAGTT TCCCCACGGTAACGCCAGCGCCAAGCGTAGTCGCTGGAGTCTCGCGACCC TTCTCGCTACTTTTTTTCGAAACGCCCCTTGTCGAAACGTACGGCGGCCC CGGCCACGGCTCCTGCCCCGTTTGCTTACGTGTCTGTGTTTCGTCGTCTG TGGCGATTCTATATACAGGCGCCCAACTTCGCGTACGGGCTGACGGCGCG AAAGTTTATGGCGCTTGAGCAGCAGCCCCAGCTGGACCTGTCTTGCGTGA GGCACATGATCAACGCCGCGGAGCCCGTGGACACGGCGTCGATCGACCGC TTCTACGCCGTCTTCGAGGCGCACGGGCTCAAGAGGTGCCGCCACTTTTT GCCGTTGGCGCGTGTGCGTGTGCACGAGGAATTGCACTTGATAAATCCAT CAAGCGTGTCGTGTAGAGCTAGCTCTCTATATGTATAGTACGACTTAATC ATCAAAAACTTGTGTATGTGTGTGTGTGTGTGTTTCGTGTACTTTCCTAT TTTACACTTTTTTTCTCTTGTACAATATTAATAGTATTATACGAAGTAGT AAGTGTGTTTTTTTTCGTCCACGTGTAGAGCTGTCATACTTCGAAGTATG TAGTATGATGCTTTAAGACACGCTGTCTGAATACCTGTACTATCATACTA TCATGCTGCATGATGGGATCTGCGGCATTTGTTTTTTTTTAGCTTGTTTT TTTCATGCACGGGTAATGTGTACAAATTGTGATTATAGTAGTAAAAAGTG TACAGACACGCTTATATTGACTCTGCGGCATCGATAGCGTGTTTTCCTGC CTCGGCCGCTAAATTCGTGACGATGCAAGCCGTGTTGTATCTCGTGATTA GGGTTATTTATTTGTTCTTTCCAATTTTTATCTTTGCCCCGTACCTTCGT TCGATTACGCGGTCGCGCGCGCGCGCGCAGGGGGGTGATCTTCCCCACCT ACGGCCTGGCGGAGCACACTGTGTATGTATGCTCGAACGGCCGCGACAGG CTGGTGGTGGACAGGATGCTGCTCGAGACGGAGAGAAAGGTAGGTGCAGT G
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Coding sequence (CDS) from alignment at S-dermatodea_contig10902:1038..5238-

>mRNA_S-dermatodea_contig10902.605.1 ID=mRNA_S-dermatodea_contig10902.605.1|Name=mRNA_S-dermatodea_contig10902.605.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1428bp|location=Sequence derived from alignment at S-dermatodea_contig10902:1038..5238- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCCGACATCAAGAGCATGTTCTCTGGCGGCGCCTCGTGGCCGGAGCT
GAACTGGGTCGTCACGGACTCCCTTCCCCTGCCGCCGAGCGACGCGCAAA
CGAACGGAGGGTTCCAGAAGCCGGACCCGGCGGACGTCGCGTTCCTCCAG
TACACGTCAGATGTCCGACATCAAGAGCATGTTCTCTGGCGGCGCCTCGT
GGCCGGAGCTGAACTGGGTCGTCACGGACTCCCTTCCCCTGCCGCCGAGC
GACGCGCAAACGAACGGAGGGTTCCAGAAGCCGGACCCGGCGGACGTCGC
GTTCCTCCAGTACACGTCAGGGTCGACGAGCGAACCGAAGGGAGTGATGA
TCACCCACGCCAACCTCGCGGACAACCTGACGCTGATCGTGAACGGGCTA
AGCGCCGTGGATGACACGGTCGTGGTGGGCTGGCTCCCACAGGGTCGACG
AGCGAACCGAAGGGAGTGATGATCACCCACGCCAACCTCGCGGACAACCT
GACGCTGATCGTGAACGGGCTAAGCGCCGTGGATGACACGGTCGTGGTGG
GCTGGCTCCCACAGTATCACGACATGGGCCTGATTGGCTCGGTGCTCGCC
CTCCTCTTCTGCGGAGGGTCGGGTTTCTACATGTCCCCCGTGTCGTTCAT
CAAGCGCCCCGCGCTCTGGGTGGAGCTCATCTCGCGCCACCGTGGGACGC
ACATGCAGTATCACGACATGGGCCTGATTGGCTCGGTGCTCGCCCTCCTC
TTCTGCGGAGGGTCGGGTTTCTACATGTCCCCCGTGTCGTTCATCAAGCG
CCCCGCGCTCTGGGTGGAGCTCATCTCGCGCCACCGTGGGACGCACATGC
AGGCGCCCAACTTCGCGTACGGGCTGACGGCGCGAAAGTTTATGGCGCTT
GAGCAGCAGCCCCAGCTGGACCTGTCTTGCGTGAGGCACATGATCAACGC
CGCGGAGCCCGTGGACACGGCGTCGATCGACCGCTTCTACGCCGTCTTCG
AGGCGCACGGGCTCAAGAGGCGCCCAACTTCGCGTACGGGCTGACGGCGC
GAAAGTTTATGGCGCTTGAGCAGCAGCCCCAGCTGGACCTGTCTTGCGTG
AGGCACATGATCAACGCCGCGGAGCCCGTGGACACGGCGTCGATCGACCG
CTTCTACGCCGTCTTCGAGGCGCACGGGCTCAAGAGGGGGGTGATCTTCC
CCACCTACGGCCTGGCGGAGCACACTGTGTATGTATGCTCGAACGGCCGC
GACAGGCTGGTGGTGGACAGGATGCTGCTCGAGACGGAGAGAAAGGTAGG
TGCAGTGGGGGGTGATCTTCCCCACCTACGGCCTGGCGGAGCACACTGTG
TATGTATGCTCGAACGGCCGCGACAGGCTGGTGGTGGACAGGATGCTGCT
CGAGACGGAGAGAAAGGTAGGTGCAGTG
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