mRNA_S-dermatodea_contig10875.581.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10875.581.1
Unique NamemRNA_S-dermatodea_contig10875.581.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10875.581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10875contigS-dermatodea_contig10875:5256..5583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924177.7843196-CDS-S-dermatodea_contig10875:5255..55671622924177.7843196-CDS-S-dermatodea_contig10875:5255..5567Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10875 5256..5567 +
1694079071.2916183-CDS-S-dermatodea_contig10875:5255..55671694079071.2916183-CDS-S-dermatodea_contig10875:5255..5567Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10875 5256..5567 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924177.7931423-UTR-S-dermatodea_contig10875:5567..55831622924177.7931423-UTR-S-dermatodea_contig10875:5567..5583Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10875 5568..5583 +
1694079071.3002048-UTR-S-dermatodea_contig10875:5567..55831694079071.3002048-UTR-S-dermatodea_contig10875:5567..5583Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10875 5568..5583 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10875.581.1prot_S-dermatodea_contig10875.581.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10875 5256..5567 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10875.581.1

>prot_S-dermatodea_contig10875.581.1 ID=prot_S-dermatodea_contig10875.581.1|Name=mRNA_S-dermatodea_contig10875.581.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=104bp
PPRLPPPHFAYPYPCLTRLSALAPLGHDGTCSLMMASHEARGTRGSGTVS
FRVVRWSCVLGCCVLLGKSHTRLLPKSNGCAGAGSQAREGTDGLPQRRTT
RAL*
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mRNA from alignment at S-dermatodea_contig10875:5256..5583+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10875.581.1 ID=mRNA_S-dermatodea_contig10875.581.1|Name=mRNA_S-dermatodea_contig10875.581.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=328bp|location=Sequence derived from alignment at S-dermatodea_contig10875:5256..5583+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTCCTCGTCTTCCTCCTCCTCATTTCGCCTACCCTTACCCTTGCCTGAC
CCGGCTGTCAGCCCTCGCTCCTCTCGGCCACGACGGAACATGCTCGTTGA
TGATGGCCTCGCACGAGGCAAGAGGCACGAGAGGAAGCGGGACTGTCAGC
TTTCGGGTGGTGCGATGGAGCTGCGTGCTGGGGTGCTGCGTGCTGCTGGG
CAAATCACACACACGTTTATTGCCAAAGTCCAATGGCTGCGCTGGCGCTG
GGTCTCAAGCGAGGGAGGGTACAGACGGGCTTCCACAACGCCGAACTACA
CGAGCGCTATGACACTGCCGCACTAAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10875:5256..5583+

>mRNA_S-dermatodea_contig10875.581.1 ID=mRNA_S-dermatodea_contig10875.581.1|Name=mRNA_S-dermatodea_contig10875.581.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at S-dermatodea_contig10875:5256..5583+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTCCTCGTCTTCCTCCTCCTCATTTCGCCTACCCTTACCCTTGCCTGAC
CCGGCTGTCAGCCCTCGCTCCTCTCGGCCACGACGGAACATGCTCGTTGA
TGATGGCCTCGCACGAGGCAAGAGGCACGAGAGGAAGCGGGACTGTCAGC
TTTCGGGTGGTGCGATGGAGCTGCGTGCTGGGGTGCTGCGTGCTGCTGGG
CAAATCACACACACGTTTATTGCCAAAGTCCAATGGCTGCGCTGGCGCTG
GGTCTCAAGCGAGGGAGGGTACAGACGGGCTTCCACAACGCCGAACTACA
CGAGCGCTATGACCTCCTCGTCTTCCTCCTCCTCATTTCGCCTACCCTTA
CCCTTGCCTGACCCGGCTGTCAGCCCTCGCTCCTCTCGGCCACGACGGAA
CATGCTCGTTGATGATGGCCTCGCACGAGGCAAGAGGCACGAGAGGAAGC
GGGACTGTCAGCTTTCGGGTGGTGCGATGGAGCTGCGTGCTGGGGTGCTG
CGTGCTGCTGGGCAAATCACACACACGTTTATTGCCAAAGTCCAATGGCT
GCGCTGGCGCTGGGTCTCAAGCGAGGGAGGGTACAGACGGGCTTCCACAA
CGCCGAACTACACGAGCGCTATGA
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