prot_S-dermatodea_contig10838.567.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig10838.567.1
Unique Nameprot_S-dermatodea_contig10838.567.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length99
Homology
BLAST of mRNA_S-dermatodea_contig10838.567.1 vs. uniprot
Match: D7FRP7_ECTSI (General transcription factor IIH subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRP7_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 3.600e-51
Identity = 84/97 (86.60%), Postives = 92/97 (94.85%), Query Frame = 0
Query:    1 VVVIYSSLSTCDPGDVHETVAKLKRHKVRSSVVGLGAEMFVLRRLTEETSGDYTVATDEGHYRDSLMAQCTPPPTQPG-QGALFADLVRMGFPAETQ 96
            VVVIYSSLSTCDPGD+HET+AKLK HKVR+SVVGLGAEMFVLRRLTEETSGDY++A DE HYR+SLMAQCTPPPT PG +GA+FADLVRMGFPAETQ
Sbjct:  170 VVVIYSSLSTCDPGDIHETIAKLKTHKVRASVVGLGAEMFVLRRLTEETSGDYSIAGDENHYRESLMAQCTPPPTPPGREGAMFADLVRMGFPAETQ 266          
BLAST of mRNA_S-dermatodea_contig10838.567.1 vs. uniprot
Match: A0A835ZF22_9STRA (General transcription factor IIH subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF22_9STRA)

HSP 1 Score: 132 bits (333), Expect = 3.460e-35
Identity = 60/91 (65.93%), Postives = 74/91 (81.32%), Query Frame = 0
Query:    2 VVIYSSLSTCDPGDVHETVAKLKRHKVRSSVVGLGAEMFVLRRLTEETSGDYTVATDEGHYRDSLMAQCTPPPTQPGQGALFADLVRMGFP 92
            VV+Y SL TCDPG++ +T+A LKRHKVR SVVGLGAE+++ RR+ E+T GD+ VA DE HY+DSL+AQCTPPPT   +G  FADLV MGFP
Sbjct:  182 VVLYGSLHTCDPGNILDTIALLKRHKVRCSVVGLGAEVYIARRIAEDTGGDFVVAVDEHHYKDSLLAQCTPPPTLAKRGPHFADLVEMGFP 272          
BLAST of mRNA_S-dermatodea_contig10838.567.1 vs. uniprot
Match: A0A7S2Y0G9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0G9_9STRA)

HSP 1 Score: 109 bits (272), Expect = 4.690e-26
Identity = 52/102 (50.98%), Postives = 71/102 (69.61%), Query Frame = 0
Query:    1 VVVIYSSLSTCDPGDVHETVAKLKRHKVRSSVVGLGAEMFVLRRLTEETSGDYTVATDEGHYRDSLMAQCTPPPTQPGQ--------GALFADLVRMGFPAE 94
            VVV+Y SLSTCDPGD+H T+ +L++ +VR SVV L AE+F+ R++ E T G + VA D GH R+ +MA C PPPT+ G         G ++ADLV+MGFP +
Sbjct:  201 VVVVYGSLSTCDPGDIHATLERLQKARVRVSVVHLSAELFICRKVVEGTGGAHGVAKDAGHMRELIMAHCRPPPTRSGGPQGGDGKCGPIYADLVKMGFPRQ 302          
BLAST of mRNA_S-dermatodea_contig10838.567.1 vs. uniprot
Match: A0A3L6Q4Y8_PANMI (GTF2H2 n=2 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6Q4Y8_PANMI)

HSP 1 Score: 102 bits (254), Expect = 9.810e-25
Identity = 46/92 (50.00%), Postives = 66/92 (71.74%), Query Frame = 0
Query:    1 VVVIYSSLSTCDPGDVHETVAKLKRHKVRSSVVGLGAEMFVLRRLTEETSGDYTVATDEGHYRDSLMAQCTPPPTQPGQGALFADLVRMGFP 92
            V+++YS+L+TCDPGD+ ET+ K K+ K+R SV+GL AE+F+ + L EET G YTVA DE H+++ L+    PPP      A  A+L++MGFP
Sbjct:   92 VLILYSALNTCDPGDIMETIEKCKKSKIRCSVIGLAAEIFICKHLCEETGGSYTVALDESHFKELLLEHAPPPPAIAEYAA--ANLIKMGFP 181          
BLAST of mRNA_S-dermatodea_contig10838.567.1 vs. uniprot
Match: UPI001CC5C31B (LOW QUALITY PROTEIN: general transcription factor IIH subunit 2-like n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC5C31B)

HSP 1 Score: 102 bits (255), Expect = 1.030e-24
Identity = 46/92 (50.00%), Postives = 68/92 (73.91%), Query Frame = 0
Query:    1 VVVIYSSLSTCDPGDVHETVAKLKRHKVRSSVVGLGAEMFVLRRLTEETSGDYTVATDEGHYRDSLMAQCTPPPTQPGQGALFADLVRMGFP 92
            V+++YS++STCDPGDV ET+ K K+ K+R SVVGL AE+++ + L +ET G YTVA DE H+++ L+    PPP    + A+ A+L++MGFP
Sbjct:   92 VLILYSAVSTCDPGDVMETIQKCKKSKIRCSVVGLSAEIYLCKHLCQETGGSYTVALDESHFKELLLEHAPPPPAI-AEFAVHANLIKMGFP 182          
BLAST of mRNA_S-dermatodea_contig10838.567.1 vs. uniprot
Match: A0A5P1F293_ASPOF (C2H2-type domain-containing protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1F293_ASPOF)

HSP 1 Score: 103 bits (257), Expect = 1.170e-24
Identity = 49/92 (53.26%), Postives = 66/92 (71.74%), Query Frame = 0
Query:    1 VVVIYSSLSTCDPGDVHETVAKLKRHKVRSSVVGLGAEMFVLRRLTEETSGDYTVATDEGHYRDSLMAQCTPPPTQPGQGALFADLVRMGFP 92
            V+V+YS+L+TCDPGD+ ETV K K+ K+R SVVGL AE+F+ + L EET G YTVA DE H+++ L+    PPP      A  A+L++MGFP
Sbjct:   85 VLVLYSALNTCDPGDIMETVKKCKKDKIRCSVVGLAAEIFICKHLCEETGGSYTVALDESHFKELLLEHAPPPPAIAEYAA--ANLIKMGFP 174          
BLAST of mRNA_S-dermatodea_contig10838.567.1 vs. uniprot
Match: A0A097PR43_CINCA (GTF2H2 (Fragment) n=1 Tax=Cinnamomum camphora TaxID=13429 RepID=A0A097PR43_CINCA)

HSP 1 Score: 102 bits (254), Expect = 1.850e-24
Identity = 47/92 (51.09%), Postives = 65/92 (70.65%), Query Frame = 0
Query:    1 VVVIYSSLSTCDPGDVHETVAKLKRHKVRSSVVGLGAEMFVLRRLTEETSGDYTVATDEGHYRDSLMAQCTPPPTQPGQGALFADLVRMGFP 92
            V+++YS+LSTCDPGD+ ET+ K K+ K+R SV+GL AE+++ + L EET G YTVA DE H++D LM    PPP         A+L++MGFP
Sbjct:   57 VLILYSALSTCDPGDIIETIQKCKQAKIRCSVIGLSAEIYICKHLCEETGGSYTVALDESHFKDLLMEHAPPPPAI--AEFAVANLIKMGFP 146          
BLAST of mRNA_S-dermatodea_contig10838.567.1 vs. uniprot
Match: A0A0A9DDU4_ARUDO (C2H2-type domain-containing protein n=2 Tax=Poaceae TaxID=4479 RepID=A0A0A9DDU4_ARUDO)

HSP 1 Score: 102 bits (255), Expect = 2.540e-24
Identity = 47/92 (51.09%), Postives = 66/92 (71.74%), Query Frame = 0
Query:    1 VVVIYSSLSTCDPGDVHETVAKLKRHKVRSSVVGLGAEMFVLRRLTEETSGDYTVATDEGHYRDSLMAQCTPPPTQPGQGALFADLVRMGFP 92
            V+++YS+L+TCDPGD+ ET+ K K+ K+R SV+GL AE+F+ + L EET G YTVA DE H+++ L+    PPP      A  A+LV+MGFP
Sbjct:   92 VLILYSALNTCDPGDIMETIEKCKKSKIRCSVIGLAAEIFICKHLCEETGGSYTVALDESHFKELLLEHAPPPPAIAEYAA--ANLVKMGFP 181          
BLAST of mRNA_S-dermatodea_contig10838.567.1 vs. uniprot
Match: A0A097PR17_ASPOF (GTF2H2 (Fragment) n=2 Tax=Asparagaceae TaxID=40552 RepID=A0A097PR17_ASPOF)

HSP 1 Score: 103 bits (257), Expect = 3.400e-24
Identity = 49/92 (53.26%), Postives = 66/92 (71.74%), Query Frame = 0
Query:    1 VVVIYSSLSTCDPGDVHETVAKLKRHKVRSSVVGLGAEMFVLRRLTEETSGDYTVATDEGHYRDSLMAQCTPPPTQPGQGALFADLVRMGFP 92
            V+V+YS+L+TCDPGD+ ETV K K+ K+R SVVGL AE+F+ + L EET G YTVA DE H+++ L+    PPP      A  A+L++MGFP
Sbjct:  167 VLVLYSALNTCDPGDIMETVKKCKKDKIRCSVVGLAAEIFICKHLCEETGGSYTVALDESHFKELLLEHAPPPPAIAEYAA--ANLIKMGFP 256          
BLAST of mRNA_S-dermatodea_contig10838.567.1 vs. uniprot
Match: A0A8K0IFP8_COCNU (Putative General transcription factor IIH subunit 2 n=1 Tax=Cocos nucifera TaxID=13894 RepID=A0A8K0IFP8_COCNU)

HSP 1 Score: 99.8 bits (247), Expect = 4.390e-24
Identity = 44/92 (47.83%), Postives = 66/92 (71.74%), Query Frame = 0
Query:    1 VVVIYSSLSTCDPGDVHETVAKLKRHKVRSSVVGLGAEMFVLRRLTEETSGDYTVATDEGHYRDSLMAQCTPPPTQPGQGALFADLVRMGFP 92
            V+++YS+L+TCDPGD+ ET+ K K+ K+R SV+GL AE+++ + L EET G YTVA DE H+++ L+    PPP      +  A+L++MGFP
Sbjct:   85 VLILYSALNTCDPGDIMETIQKCKKAKIRCSVIGLSAEIYICKHLCEETGGSYTVALDESHFKELLLEHAPPPPAIAEYAS--ANLIKMGFP 174          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10838.567.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRP7_ECTSI3.600e-5186.60General transcription factor IIH subunit n=2 Tax=E... [more]
A0A835ZF22_9STRA3.460e-3565.93General transcription factor IIH subunit n=1 Tax=T... [more]
A0A7S2Y0G9_9STRA4.690e-2650.98Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A3L6Q4Y8_PANMI9.810e-2550.00GTF2H2 n=2 Tax=Panicum miliaceum TaxID=4540 RepID=... [more]
UPI001CC5C31B1.030e-2450.00LOW QUALITY PROTEIN: general transcription factor ... [more]
A0A5P1F293_ASPOF1.170e-2453.26C2H2-type domain-containing protein n=1 Tax=Aspara... [more]
A0A097PR43_CINCA1.850e-2451.09GTF2H2 (Fragment) n=1 Tax=Cinnamomum camphora TaxI... [more]
A0A0A9DDU4_ARUDO2.540e-2451.09C2H2-type domain-containing protein n=2 Tax=Poacea... [more]
A0A097PR17_ASPOF3.400e-2453.26GTF2H2 (Fragment) n=2 Tax=Asparagaceae TaxID=40552... [more]
A0A8K0IFP8_COCNU4.390e-2447.83Putative General transcription factor IIH subunit ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410coord: 1..75
e-value: 3.3E-23
score: 84.2
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 1..65
IPR007198Ssl1-likePFAMPF04056Ssl1coord: 1..92
e-value: 3.5E-29
score: 102.0
NoneNo IPR availablePANTHERPTHR12695GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2coord: 1..96

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10838contigS-dermatodea_contig10838:3337..3928 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10838.567.1mRNA_S-dermatodea_contig10838.567.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig10838 3337..3928 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig10838.567.1 ID=prot_S-dermatodea_contig10838.567.1|Name=mRNA_S-dermatodea_contig10838.567.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=99bp
VVVIYSSLSTCDPGDVHETVAKLKRHKVRSSVVGLGAEMFVLRRLTEETS
GDYTVATDEGHYRDSLMAQCTPPPTQPGQGALFADLVRMGFPAETQVD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036465vWFA_dom_sf
IPR007198Ssl1-like