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Homology
BLAST of mRNA_S-dermatodea_contig1077.522.1 vs. uniprot
Match: D8LFA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFA0_ECTSI) HSP 1 Score: 120 bits (302), Expect = 1.080e-27 Identity = 106/294 (36.05%), Postives = 128/294 (43.54%), Query Frame = 1
Query: 448 FEAAHVHVLSLMETESLVPFLTSRLYSTVRERIADGEMETLFQEDIESTSDIMSKEARNKILFAFLSTLRSIKFVEFLGDPDAKEVLSSNMGIDWFRQYLVIEFAEEGIDLWKATRDMLERSRLKVE--------------------------------------------------------------------------------------------DSRHAEEAHNIAEGKTPGSXXXXXXXXXXXXXXXXXXAGGDGEFDIRTEGRYIHERFIKSGCGAECNLPGRTVKK 1053
F++A + V+S ME ESL FL S Y +R+R +G ++ L QED+ES DIMSKEAR FVEFLGDP VLSS +GID FRQYLVIEFAEEGIDL ATR L ++R K + ++ E A + +XXXXXXXXXXX GG+G FDI+ EG+ I+ERFIK GCGAECNLPG V K
Sbjct: 2 FDSATMEVVSTMEKESLSEFLVSSTYLELRKRKEEGGLDQLLQEDLESVKDIMSKEAR---------------FVEFLGDPGLNVVLSSKIGIDKFRQYLVIEFAEEGIDLLLATRSFLVKARAKKTATASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALEGKNGEARDMPATTEANPAXXXXXXXXXXXENIPDGGXGGEGVFDIQLEGKTIYERFIKRGCGAECNLPGTVVTK 280
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | RGS domain |
| Ec32 ortholog | Ec-01_004180.1 |
| Exons | 6 |
| Model size | 1284 |
| Cds size | 1284 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1077.522.1 >prot_S-dermatodea_contig1077.522.1 ID=prot_S-dermatodea_contig1077.522.1|Name=mRNA_S-dermatodea_contig1077.522.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=428bp
MGNFVGNCVHVVVPFEERPREGSGKHGGTKEVENGAGTKGGKQPVIKGEL
DAANEPPTTITNVLSNALYAMEFHKHLAITNRSENYEFFQSVSHFTHDAA
TSKAAIVEAANKIYSLYVAEKAPLRVSLRDDICHSIKAAIDNGTANKQTF
EAAHVHVLSLMETESLVPFLTSRLYSTVRERIADGEMETLFQEDIESTSD
IMSKEARNKILFAFLSTLRSIKFVEFLGDPDAKEVLSSNMGIDWFRQYLV
IEFAEEGIDLWKATRDMLERSRLKVEDSRHAEEAHNIAEGKTPGSEGGSG
GKQAETDGNDEATAGGDGEFDIRTEGRYIHERFIKSGCGAECNLPGRTVK
KVSTVLEDEESSTEDIVHAFEQVEQEIFKLLAYDPFLRFKRQAVTKKTII
VGSLSGLYTKYCMRARLRTQRSSLSLVS back to topmRNA from alignment at S-dermatodea_contig1077:16776..21610- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig1077.522.1 ID=mRNA_S-dermatodea_contig1077.522.1|Name=mRNA_S-dermatodea_contig1077.522.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4835bp|location=Sequence derived from alignment at S-dermatodea_contig1077:16776..21610- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGGAACTTCGTCGGGAATTGCGTCCACGTTGTCGTGCCTTTCGAGGA
AAGACCACGAGAGGGAAGCGGCAAACACGGTGGGACTAAGGAGGTAGAAA
ACGGAGCGGGGACGAAGGGTGGTAAGCAACCGGTGATCAAGGGCGAGCTG
GATGCCGCGAACGAACCGCCGACCACAATCACCAACGTGCTGTCCAACGC
GTTGTACGCCATGGAATTCCACAAGCACCTGGCGATAACGTGAGTCAGCA
ATTAATATATAAATAGGCAGGCGCAGTTTAGGTTTTTGCAGCGTATTGCA
CCGAGAGAGATCCTGGAGGAAGTGCTTGATCGGAAACGTCGATGGCGTGT
ATGATAATGAAAAGCAGTCGGCCGCAAGAAAAGTTCCAGCGGTTTGCACC
TTCGAGCACATTGTGAAGGCGCCGCAAAGGAAACGCCAATGTGGCGGTGT
ACTGATGATAGAGGATTGTTTTGTACACCAAGTACTTGTATTGTATTAAC
TGAGGCACACATAATCTATAATATTATAATCAGGACCAAATGTGCCGAAA
CGTACTCGTATACTGCTGGAATGCTAGAATGTACCCAACATAATCTCTCA
GTTTCGTGTACAACAAAGTCCACCCGGGTCCTGTCCCGGGAGTTATGGAT
TGTATCATGCACTTTCTGTGTTCTGTTTCTTTTTTTAAATATAGCCAGAA
AATCAGTGTGGCCTGGCATAAAAAAACTGCAAAGTAAGCCGCTCTGAAAT
ACCAAATAAAAGGCTGACGTTCGGGCCAACGATTTAAAAATAGGACTTGA
CTACGCTACCTGTACGTGTATCGAGCACAAAAGTGGTCCAGAAATTATTA
TACTGCCTGTGTACCTCCGTAGTATAATAATTTCTGGTTTTCGCCGAGGA
GCCAAATATATTGTTTTTTGAAAATACTGCGGGGTAACCAACACGAGGCA
GTACGTAGTTGTTGGCCAAACATCCCGCTGCTTGGAGGGCCGACAGAAGC
AGGAAATTGGCCACTCGTGGAATATGACGAGGTGTGCATACCTCAAGTAC
GACCATTTGGTCCAGGTAGTGGACGCTCCCAAATCTGATGGTACCCCAAC
TCAGCACTTATGACGACACCATCCGCGGCTATCCCGATAAAATCACGGCA
AGGCTAACACAGAGCTCACACCTCAACAGAGCCGCAACGAGACCTAGTGG
GTCATAAGTACGGTGTCGTCGTAGACTAGATTTTGGTTGCGCCATACACG
GCTCAAGGGGGTTTGTACAGAGAATCGGCCAGTTTTCTTGCATTTTTTTG
TTTTTGCACACATATAATAGATAGACTTTATTTTCCGAGGTCCATCTGTG
GCCACAAGGGATCATCCCATCTCTCCCCGGTTCTCACCTTTGATTTTTGT
AGCGCATTGGGTTCGGCGATCCCAGCAGCTATTGTACGTGAATTATTGTC
TCGCCGCCTTTTGCCAGCGCGAACCCCGAGAAGGAACTACCATATGCGTA
CAACAAAGTCCACCGGGTTCTGTCCCGATGAGTTGTGGATTGTATCATGC
ACTTTCTGTCTTCTGTTTCTTTACTAATATAAGTTCTGAGTCCCGAGGAC
GCTGTCCAGAAGGTTGGTGGCGTTGTATCGCGCTTCCACAACTGTAACGC
GTGGTTCTCCCAAGAATTTTGCCGGTGGCTTCTCCCGAATACCAGTTTTC
AGCAAATTGCGTCATTGACCCCCATCCCTTGCGTTACTTTCCTTTTCTCC
GCTGCATTGTGATCCCAACAGAAACCGAAGCGAGAACTACGAGTTCTTCC
AGTCTGTATCGCACTTCACGCACGATGCTGCTACGAGCAAGGCGGCCATC
GTAGAGGCTGCCAACAAGATCTACAGTCTCTACGTTGCGGAGAAGGCCCC
GCTCAGGGTTTCCCTGCGAGACGACATATGCCATAGTATCAAGGCGGTAC
GTATCATACTCAAAACTACCGCGCGATAGCACGCTACAAGTTGTGGAATA
TATGAAAGGTACCGTTAAAACCAGATCGAAACGAGGGCACCCCAGTCTGT
AGGCGCCGACTCGGCTGTCACTGCTTCACTGGAACAACGACACATGTGAT
CATCCTGTCGCACAGGGTGACGAGAGGAGGTCGTAGCCTACTTGGTCCCA
TGCAATAACTTTGTCAAACCACGTACGCAACCATTTTGGCGCTCGAGTTG
TTCCGGATGGGAAGTAAAGACCAAGCCACCCTAGCAGGCGACCAAGTGAT
CGAGGAAAGCGAAGATTCCCTAATACCAGGACGCCCCTTTCATCCTTCCA
GGCCATCGACAATGGGACGGCGAACAAGCAGACTTTCGAAGCGGCACACG
TGCATGTCCTCTCGCTCATGGAGACCGAGTCGTTGGTGCCCTTTCTCACG
TCCCGCCTGTACTCGACGGTTAGAGAAAGGATCGCGGACGGAGAGATGGA
GACCTTGTTTCAGGAAGATATCGAGAGCACCTCGGACATAATGTCCAAAG
AGGCAAGAAATAAAATACTTTTTGCGTTTTTATCCACCCTCCGTTCTATC
AAAGTTGCTTTGATATCCGGTTTCCTGGACCGTTCGCGATTTCAACGAGC
GATATAACCCCAAAACAAATTATGGCACTGCGTGCTTTGGGGAAAGAATT
GCGATGAAGCCGCAGGAAACCGGTAGCTCGAGTGGCACTACGACAGAGTA
CAGTAGCTCAGCAAAAGAGTGAAGACATGATAATACATTTGAAGCTATTG
CGCTACGTTTTTTTTATCTTGAATCGTCCACCTCTTAGGAACGACGTGTG
TTTCTTGTTCAAGTCGCATGCGAGCGACCTCGTATTCACGAGCAACGTTA
TGCAAAACCCTCTTAAGACTCAACTTGAACTTCCTCTCGCCGCCGACTTC
CGCTCCTGTTTCACCCCCGGCATCGTTCCGCCGACAACCCGTTTCACCGT
CACACACCGCGGCTATCCGCTAATCAACAGTTCGTTGAGTTCTTGGGAGA
CCCCGACGCCAAAGAAGTATTGTCTTCTAATATGGGCATTGACTGGTTCC
GGCAATATCTCGTTATCGAGTTCGCGGAGGAAGGGATAGACCTGTGGAAA
GCAACCCGCGACATGCTCGAACGGAGCCGCTTGAAGGTGGAGGACAGCCG
ACACGCTGAGGAGGCACACAATATTGCGGAGGGGAAAACCCCCGGCTCAG
AAGGGGGGAGTGGCGGCAAACAAGCCGAGACGGACGGGAATGACGAGGCA
ACAGCGGGAGGAGACGGGGAGTTCGATATCCGAACGGAGGGGAGATACAT
TCATGAGCGGTTCATTAAGAGCGGCTGTGGGGCTGAGTGCAACTTGCCTG
GGAGGACTGTAAAAAAGGTACGGGGGTATTATAGCGGTTGCACGGCGGTG
GCAGGGCAGGGGATAGCAGACAAGGGATTTAAAACCACCCTACAGGCTTG
GTAGTACCGCTGCGGATTTTGTTTGCTCTCTGTCTGGCCGCGCAACTGCT
GATGCCAACTTTGCATTCGTTGAAGCTCCAACTCCTGGCGTTTCGAATGG
TCACATGGTTGGGATAAATGAGTTCGTCCTTTGCTTAGTTTTTGACTCGA
TTGGTTCGAGCCTGACGGCGCTATAACGCACAGATTTCAGCTGTTGGGTG
AAATACTCCTGTGTTCGCGCTTGCTACGGCGGTGGAATAGGAAATTTAAG
TTGTCCAGACGGCAGGAAAACTCAGATTGTTTTTAAGCTCGTACTAATCA
TAACGTGAACGGAAGAGGGCGAAATCGTTGCTGGCATCAAGAGATTATTG
GCATGGGTCGACCCCACGCGAGGATCTTCGAAGCGTTTTTACACGGCTAG
GTTGTTCGTTGGCAGCTTGGGCAAACGCCAGCCAAACAATCGAACAGGAA
TGTTACACACATGTAACCGTGGGCAATGAAACAGATGAGATGCATACGAA
AAGTGGGTGCATTCAGTTGCTTTGGAGAACTTGACACATTGGTGCCAAGA
TCGGACCAAGGTTTGCTAGGTTGACGCCACGCTCCAGAGCACACCGCGAA
CGAACATCATCAAGTAACCCGTGCTCTCACGCCCTTAACAAAGACCGCAC
AGACGTGGTGCTACCATGCACATAGTCACGACACCGAGCAGGCCCTCATG
TACCCATCGCAGCCATTTTTTTATATTTTCTTTTTCACATGTCTATCCCG
CAGGTTTCGACAGTGTTAGAGGACGAGGAGAGTAGCACGGAAGATATCGT
GCACGCCTTCGAGCAGGTGGAGCAAGAAATATTCAAGCTCCTTGCTTACG
ATCCATTCCTTCGCTTCAAAAGGCAAGCCGTCACGAAAAAAACGATTATT
GTGGGGAGCCTGTGTGCAGGTAGACCGCATGATGTCCAAGACCAGCTTTC
GAGGACGCTGGCGCGACTAGCTAACACTCGCCTGATTTCGTCTTTCGATC
TTTGTCGATAAGGTTGGACAGGTTATCACTGTTATGCCTGTGTCAATGGT
TGATATTGCAACAAATTAAGCAGATGCACAGGGTTTTGACGAATTTCGTA
TGATATGATAGCAACATTGTTTTCAAACGTCACACTCGATTTGGTTGTTT
GATTATCGCACATACACACCGGTTGGCTCGCAATGAACGGCGTTCAAAAC
TTTTTAGTCAGAGGATATAACACCTATGTAAGAACTTCAATAAGCGGCAC
GTGTTCAAGAACGCAGCACGTTTCCCCCGGCCTCTTGTGTGCGCGTTTTG
TCTCACTCGCAGGTCAGGGTTGTATACCAAGTACTGCATGAGGGCGCGGC
TCAGAACTCAGCGGTCATCGCTGTCGTTAGTGTCG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig1077:16776..21610- >mRNA_S-dermatodea_contig1077.522.1 ID=mRNA_S-dermatodea_contig1077.522.1|Name=mRNA_S-dermatodea_contig1077.522.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2568bp|location=Sequence derived from alignment at S-dermatodea_contig1077:16776..21610- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGGAACTTCGTCGGGAATTGCGTCCACGTTGTCGTGCCTTTCGAGGA
AAGACCACGAGAGGGAAGCGGCAAACACGGTGGGACTAAGGAGGTAGAAA
ACGGAGCGGGGACGAAGGGTGGTAAGCAACCGGTGATCAAGGGCGAGCTG
GATGCCGCGAACGAACCGCCGACCACAATCACCAACGTGCTGTCCAACGC
GTTGTACGCCATGGAATTCCACAAGCACCTGGCGATAACATGGGGAACTT
CGTCGGGAATTGCGTCCACGTTGTCGTGCCTTTCGAGGAAAGACCACGAG
AGGGAAGCGGCAAACACGGTGGGACTAAGGAGGTAGAAAACGGAGCGGGG
ACGAAGGGTGGTAAGCAACCGGTGATCAAGGGCGAGCTGGATGCCGCGAA
CGAACCGCCGACCACAATCACCAACGTGCTGTCCAACGCGTTGTACGCCA
TGGAATTCCACAAGCACCTGGCGATAACAAACCGAAGCGAGAACTACGAG
TTCTTCCAGTCTGTATCGCACTTCACGCACGATGCTGCTACGAGCAAGGC
GGCCATCGTAGAGGCTGCCAACAAGATCTACAGTCTCTACGTTGCGGAGA
AGGCCCCGCTCAGGGTTTCCCTGCGAGACGACATATGCCATAGTATCAAG
GCGAAACCGAAGCGAGAACTACGAGTTCTTCCAGTCTGTATCGCACTTCA
CGCACGATGCTGCTACGAGCAAGGCGGCCATCGTAGAGGCTGCCAACAAG
ATCTACAGTCTCTACGTTGCGGAGAAGGCCCCGCTCAGGGTTTCCCTGCG
AGACGACATATGCCATAGTATCAAGGCGGCCATCGACAATGGGACGGCGA
ACAAGCAGACTTTCGAAGCGGCACACGTGCATGTCCTCTCGCTCATGGAG
ACCGAGTCGTTGGTGCCCTTTCTCACGTCCCGCCTGTACTCGACGGTTAG
AGAAAGGATCGCGGACGGAGAGATGGAGACCTTGTTTCAGGAAGATATCG
AGAGCACCTCGGACATAATGTCCAAAGAGGCAAGAAATAAAATACTTTTT
GCGTTTTTATCCACCCTCCGTTCTATCAAAGCCATCGACAATGGGACGGC
GAACAAGCAGACTTTCGAAGCGGCACACGTGCATGTCCTCTCGCTCATGG
AGACCGAGTCGTTGGTGCCCTTTCTCACGTCCCGCCTGTACTCGACGGTT
AGAGAAAGGATCGCGGACGGAGAGATGGAGACCTTGTTTCAGGAAGATAT
CGAGAGCACCTCGGACATAATGTCCAAAGAGGCAAGAAATAAAATACTTT
TTGCGTTTTTATCCACCCTCCGTTCTATCAAATTCGTTGAGTTCTTGGGA
GACCCCGACGCCAAAGAAGTATTGTCTTCTAATATGGGCATTGACTGGTT
CCGGCAATATCTCGTTATCGAGTTCGCGGAGGAAGGGATAGACCTGTGGA
AAGCAACCCGCGACATGCTCGAACGGAGCCGCTTGAAGGTGGAGGACAGC
CGACACGCTGAGGAGGCACACAATATTGCGGAGGGGAAAACCCCCGGCTC
AGAAGGGGGGAGTGGCGGCAAACAAGCCGAGACGGACGGGAATGACGAGG
CAACAGCGGGAGGAGACGGGGAGTTCGATATCCGAACGGAGGGGAGATAC
ATTCATGAGCGGTTCATTAAGAGCGGCTGTGGGGCTGAGTGCAACTTGCC
TGGGAGGACTGTAAAAAAGTTCGTTGAGTTCTTGGGAGACCCCGACGCCA
AAGAAGTATTGTCTTCTAATATGGGCATTGACTGGTTCCGGCAATATCTC
GTTATCGAGTTCGCGGAGGAAGGGATAGACCTGTGGAAAGCAACCCGCGA
CATGCTCGAACGGAGCCGCTTGAAGGTGGAGGACAGCCGACACGCTGAGG
AGGCACACAATATTGCGGAGGGGAAAACCCCCGGCTCAGAAGGGGGGAGT
GGCGGCAAACAAGCCGAGACGGACGGGAATGACGAGGCAACAGCGGGAGG
AGACGGGGAGTTCGATATCCGAACGGAGGGGAGATACATTCATGAGCGGT
TCATTAAGAGCGGCTGTGGGGCTGAGTGCAACTTGCCTGGGAGGACTGTA
AAAAAGGTTTCGACAGTGTTAGAGGACGAGGAGAGTAGCACGGAAGATAT
CGTGCACGCCTTCGAGCAGGTGGAGCAAGAAATATTCAAGCTCCTTGCTT
ACGATCCATTCCTTCGCTTCAAAAGGCAAGCCGTCACGAAAAAAACGATT
ATTGTGGGGAGCCTGTTTCGACAGTGTTAGAGGACGAGGAGAGTAGCACG
GAAGATATCGTGCACGCCTTCGAGCAGGTGGAGCAAGAAATATTCAAGCT
CCTTGCTTACGATCCATTCCTTCGCTTCAAAAGGCAAGCCGTCACGAAAA
AAACGATTATTGTGGGGAGCCTGTCAGGGTTGTATACCAAGTACTGCATG
AGGGCGCGGCTCAGAACTCAGCGGTCATCGCTGTCGTTAGTGTCGGTCAG
GGTTGTATACCAAGTACTGCATGAGGGCGCGGCTCAGAACTCAGCGGTCA
TCGCTGTCGTTAGTGTCG back to top
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