mRNA_S-dermatodea_contig10739.502.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10739.502.1
Unique NamemRNA_S-dermatodea_contig10739.502.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10739.502.1 vs. uniprot
Match: A0A6H5K3X3_9PHAE (Lactamase_B domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K3X3_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 5.030e-5
Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:   19 QELTKMKLPELKALYREGGGKPGTLRKAELVERLTLS 129
            Q+L K+KL ELK LYR+ GGKPG+LRKAELV+RL+ S
Sbjct:  230 QDLAKLKLAELKVLYRQSGGKPGSLRKAELVQRLSES 266
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10739.502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K3X3_9PHAE5.030e-570.27Lactamase_B domain-containing protein n=2 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10739contigS-dermatodea_contig10739:3328..3801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size474
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924171.1090877-CDS-S-dermatodea_contig10739:3327..38011622924171.1090877-CDS-S-dermatodea_contig10739:3327..3801Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10739 3328..3801 +
1694079066.3486848-CDS-S-dermatodea_contig10739:3327..38011694079066.3486848-CDS-S-dermatodea_contig10739:3327..3801Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10739 3328..3801 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10739.502.1prot_S-dermatodea_contig10739.502.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10739 3328..3801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10739.502.1

>prot_S-dermatodea_contig10739.502.1 ID=prot_S-dermatodea_contig10739.502.1|Name=mRNA_S-dermatodea_contig10739.502.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=158bp
ASALQSQELTKMKLPELKALYREGGGKPGTLRKAELVERLTLSLEGKARD
EPRLETATVPPATGSTQRADVPDTQETEEVSVVALAPAGASPESAPRREG
FVDGDLLSQASIRAGDEESSASEQKPMSSLTLGAEGDTTRVPVSEGGGTA
APSHAEAG
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mRNA from alignment at S-dermatodea_contig10739:3328..3801+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10739.502.1 ID=mRNA_S-dermatodea_contig10739.502.1|Name=mRNA_S-dermatodea_contig10739.502.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=474bp|location=Sequence derived from alignment at S-dermatodea_contig10739:3328..3801+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGTCGGCGCTTCAGTCCCAAGAGCTGACGAAGATGAAGCTACCGGAGCT
AAAGGCGCTGTATCGGGAGGGTGGCGGAAAGCCAGGAACGTTACGGAAGG
CGGAGCTGGTGGAGAGGCTGACTCTGTCTCTAGAAGGGAAAGCCCGCGAC
GAGCCTCGGTTGGAAACCGCGACCGTCCCTCCGGCGACAGGAAGTACCCA
GCGTGCCGACGTCCCCGACACGCAGGAGACCGAGGAGGTGAGCGTTGTCG
CGTTAGCGCCTGCGGGAGCGTCTCCAGAATCGGCGCCACGGCGCGAGGGC
TTCGTGGATGGTGATCTCCTGTCGCAGGCGTCTATCCGCGCAGGTGACGA
GGAGAGTTCTGCGAGCGAGCAGAAGCCAATGTCGTCGCTCACGCTTGGCG
CCGAGGGGGATACCACACGTGTACCGGTCAGCGAAGGCGGCGGCACCGCT
GCCCCCAGCCACGCTGAGGCAGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10739:3328..3801+

>mRNA_S-dermatodea_contig10739.502.1 ID=mRNA_S-dermatodea_contig10739.502.1|Name=mRNA_S-dermatodea_contig10739.502.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at S-dermatodea_contig10739:3328..3801+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGTCGGCGCTTCAGTCCCAAGAGCTGACGAAGATGAAGCTACCGGAGCT
AAAGGCGCTGTATCGGGAGGGTGGCGGAAAGCCAGGAACGTTACGGAAGG
CGGAGCTGGTGGAGAGGCTGACTCTGTCTCTAGAAGGGAAAGCCCGCGAC
GAGCCTCGGTTGGAAACCGCGACCGTCCCTCCGGCGACAGGAAGTACCCA
GCGTGCCGACGTCCCCGACACGCAGGAGACCGAGGAGGTGAGCGTTGTCG
CGTTAGCGCCTGCGGGAGCGTCTCCAGAATCGGCGCCACGGCGCGAGGGC
TTCGTGGATGGTGATCTCCTGTCGCAGGCGTCTATCCGCGCAGGTGACGA
GGAGAGTTCTGCGAGCGAGCAGAAGCCAATGTCGTCGCTCACGCTTGGCG
CCGAGGGGGATACCACACGTGTACCGGTCAGCGAAGGCGGCGGCACCGCT
GCCCCCAGCCACGCTGAGGCAGGCGCGTCGGCGCTTCAGTCCCAAGAGCT
GACGAAGATGAAGCTACCGGAGCTAAAGGCGCTGTATCGGGAGGGTGGCG
GAAAGCCAGGAACGTTACGGAAGGCGGAGCTGGTGGAGAGGCTGACTCTG
TCTCTAGAAGGGAAAGCCCGCGACGAGCCTCGGTTGGAAACCGCGACCGT
CCCTCCGGCGACAGGAAGTACCCAGCGTGCCGACGTCCCCGACACGCAGG
AGACCGAGGAGGTGAGCGTTGTCGCGTTAGCGCCTGCGGGAGCGTCTCCA
GAATCGGCGCCACGGCGCGAGGGCTTCGTGGATGGTGATCTCCTGTCGCA
GGCGTCTATCCGCGCAGGTGACGAGGAGAGTTCTGCGAGCGAGCAGAAGC
CAATGTCGTCGCTCACGCTTGGCGCCGAGGGGGATACCACACGTGTACCG
GTCAGCGAAGGCGGCGGCACCGCTGCCCCCAGCCACGCTGAGGCAGGC
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