prot_S-dermatodea_contig9838.17809.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig9838.17809.1
Unique Nameprot_S-dermatodea_contig9838.17809.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length179
Homology
BLAST of mRNA_S-dermatodea_contig9838.17809.1 vs. uniprot
Match: A0A6H5JBL3_9PHAE (DNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL3_9PHAE)

HSP 1 Score: 302 bits (774), Expect = 9.100e-102
Identity = 153/171 (89.47%), Postives = 162/171 (94.74%), Query Frame = 0
Query:    2 QAQGLVRSFLKAFPQIESFLAATRRSARENGYVRTLTGRRRHLPQINNSHSAALKAQAERQAVNSVVQGTAADIIKTAMVLVARRLDAWRSSLEEGLECPRLIMQIHDELVLECPACEEDLEKLKGLLIECMEVEAPAMLGIKCPLTVNMLVGMSWGSMRRVVSHDEDGDN 172
            QAQGLVRSFLKAFP IE F+AATRR ARENGYV TLTGRRRHLP+INNS +AA KAQAERQAVNSVVQGTAADI+KTAMVLVARRLDAWRS L+EGL+CPRLIMQIHDELVLECPACEEDLEKLKGLL +CMEVEAPA+LGIKCPLTVNMLVGMSWGSMRRVVSHDED D+
Sbjct:   94 QAQGLVRSFLKAFPGIEPFMAATRRFARENGYVCTLTGRRRHLPEINNSRNAAAKAQAERQAVNSVVQGTAADIMKTAMVLVARRLDAWRSRLDEGLDCPRLIMQIHDELVLECPACEEDLEKLKGLLADCMEVEAPAVLGIKCPLTVNMLVGMSWGSMRRVVSHDEDDDD 264          
BLAST of mRNA_S-dermatodea_contig9838.17809.1 vs. uniprot
Match: D7FK42_ECTSI (DNA-directed DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK42_ECTSI)

HSP 1 Score: 294 bits (752), Expect = 1.150e-89
Identity = 153/184 (83.15%), Postives = 163/184 (88.59%), Query Frame = 0
Query:    2 QAQGLVRSFLKAFPQIESFLAATRRS-------------ARENGYVRTLTGRRRHLPQINNSHSAALKAQAERQAVNSVVQGTAADIIKTAMVLVARRLDAWRSSLEEGLECPRLIMQIHDELVLECPACEEDLEKLKGLLIECMEVEAPAMLGIKCPLTVNMLVGMSWGSMRRVVSHDEDGDN 172
            QAQGLVRSFLKAFP IE F+AATRR              ARENGYV TLTGRRRHLP+INNS +AA KAQAERQAVNSVVQGTAADI+KTAMVLVARRLDAWRSSL+EGL+CPRLIMQIHDELVLECPACEEDLE+LKGLL +CMEVEAPA+LGIKCPLTVNMLVGMSWGSMRRVVSHDED D+
Sbjct: 1034 QAQGLVRSFLKAFPGIEPFMAATRRYGTPCRHQISQRRFARENGYVCTLTGRRRHLPEINNSRNAAAKAQAERQAVNSVVQGTAADIMKTAMVLVARRLDAWRSSLDEGLDCPRLIMQIHDELVLECPACEEDLERLKGLLADCMEVEAPAVLGIKCPLTVNMLVGMSWGSMRRVVSHDEDDDD 1217          
BLAST of mRNA_S-dermatodea_contig9838.17809.1 vs. uniprot
Match: A0A7S3V8E1_9STRA (DNA-directed DNA polymerase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V8E1_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.230e-29
Identity = 66/164 (40.24%), Postives = 102/164 (62.20%), Query Frame = 0
Query:    3 AQGLVRSFLKAFPQIESFLAATRRSARENGYVRTLTGRRRHLPQINNSHSAALKAQAERQAVNSVVQGTAADIIKTAMVLVARRLDAWRSSLEEGLEC---PRLIMQIHDELVLECPACEEDLEKLKGLLIECMEVEAPAMLGIKCPLTVNMLVGMSWGSMRRV 163
            A+   RSF   FP ++ ++  T  SAR N YV T++GRRR+L  I N    AL++QAERQA+N+++QG+AAD++K AM+ +A R+  WR       E    PR+++QIHDEL+ E  A + D+++L+ ++  C   E      +K PL +   +G SWGSM+ +
Sbjct: 1215 AKSFFRSFYGRFPDVKRWMDQTISSARTNKYVTTISGRRRYLDNITNE-DRALRSQAERQAINTIIQGSAADLMKLAMLKMASRITDWRKERTGNGESNTPPRMLLQIHDELLFEIVANQADVDRLRSVVTRCCTEECVEEFRLKVPLKLKCSIGTSWGSMKEL 1377          
BLAST of mRNA_S-dermatodea_contig9838.17809.1 vs. uniprot
Match: A0A3M1LAW2_9CHLR (DNA polymerase I (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M1LAW2_9CHLR)

HSP 1 Score: 117 bits (292), Expect = 2.310e-29
Identity = 67/163 (41.10%), Postives = 102/163 (62.58%), Query Frame = 0
Query:    2 QAQGLVRSFLKAFPQIESFLAATRRSARENGYVRTLTGRRRHLPQINNSHSAALKAQAERQAVNSVVQGTAADIIKTAMVLVARRLDAWRSSLEEGLECPRLIMQIHDELVLECPACEEDLEKLKGLLIECMEVEAPAMLGIKCPLTVNMLVGMSWGSMRRVV 164
            +A+  +R++ + FP +++++  T+R A E GYV TL GRRR+ P + N    A + +AER+A+N+ +QGTAADIIK AMV + RRL       E+G    R+I+Q+HDEL+LE P  EE++  +  L+ E ME   P    +K PL V++ VG +W  M  + 
Sbjct:   78 EAEAFIRTYFERFPGVKAYIERTKRQALEQGYVETLLGRRRYFPNLANLRGPA-RGRAEREAINAPIQGTAADIIKIAMVRLHRRLQ------EQGFRA-RMILQVHDELILETP--EEEVPAVASLVREVMESAFP----LKVPLKVDLKVGENWEEMEEMA 226          
BLAST of mRNA_S-dermatodea_contig9838.17809.1 vs. uniprot
Match: A0A6V2EN94_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2EN94_9STRA)

HSP 1 Score: 123 bits (308), Expect = 3.050e-29
Identity = 71/164 (43.29%), Postives = 101/164 (61.59%), Query Frame = 0
Query:    3 AQGLVRSFLKAFPQIESFLAATRRSARENGYVRTLTGRRRHLPQINNSHSAALKAQAERQAVNSVVQGTAADIIKTAMVLVARRLDAWRSSLEE--GLE-CPRLIMQIHDELVLECPACEEDLEKLKGLLIECMEVEAPAMLGIKCPLTVNMLVGMSWGSMRRV 163
            AQ    SF + F  +  ++  T+  AR+N +V T+ GRRR+L  IN++ +A  KAQAERQAVN+++QG+AAD+IK AM+  A RL  W   + E  G    PRL++QIHDEL+ E  A E D+ KLK ++ +C   E      +K PL++    G+SWG M  V
Sbjct:  963 AQNFFTSFYRRFHGVRQWMEQTKDFARQNCFVTTIAGRRRYLDDINSTDTAK-KAQAERQAVNTIIQGSAADLIKLAMLKTASRLMDWHKEVIEAGGTNIAPRLLLQIHDELLFEVMANETDVSKLKDIVTQCCGEECVEEFKLKVPLSLKCTCGISWGLMNEV 1125          
BLAST of mRNA_S-dermatodea_contig9838.17809.1 vs. uniprot
Match: A0A7S2LVN7_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LVN7_9STRA)

HSP 1 Score: 116 bits (291), Expect = 7.590e-29
Identity = 59/165 (35.76%), Postives = 104/165 (63.03%), Query Frame = 0
Query:    3 AQGLVRSFLKAFPQIESFLAATRRSARENGYVRTLTGRRRHLPQINNSHSAALKAQAERQAVNSVVQGTAADIIKTAMVLVARRLDAWRSSLEEGLEC----PRLIMQIHDELVLECPACEEDLEKLKGLLIECMEVEAPAMLGIKCPLTVNMLVGMSWGSMRRV 163
            AQ  +  F + F +++S++  T++ AR NGYV T+ GRRR+L  I  S     ++QAERQA+N+V+QG+AAD++KTAM+ ++  L +W+     G       P++++QIHDE++LE    E D++K++ + ++    +   +  +K PL +    G+S+GSM+ +
Sbjct:   99 AQQTMNDFFRRFRRVKSWMEETKQLARRNGYVLTIAGRRRYLNDIR-SEDNGKRSQAERQAINTVIQGSAADLMKTAMIQLSENLQSWQEGTSTGELAMNARPQMVLQIHDEVLLELSFNERDIKKMQAIAVKSCCRDCEELFNLKVPLLLKCSCGLSFGSMKEI 262          
BLAST of mRNA_S-dermatodea_contig9838.17809.1 vs. uniprot
Match: A0A7S2LIW8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LIW8_9STRA)

HSP 1 Score: 120 bits (300), Expect = 2.290e-28
Identity = 69/163 (42.33%), Postives = 101/163 (61.96%), Query Frame = 0
Query:    2 QAQGLVRSFLKAFPQIESFLAATRRSARENGYVRTLTGRRRHLPQINNSHSAALKAQAERQAVNSVVQGTAADIIKTAMVLVARRLDAWRSSLEEGLEC------PRLIMQIHDELVLECPACEEDLEKLKGLLIECMEVEAPAMLGIKCPLTVNMLVGMSWG 158
            +AQ    SF   F Q   ++  T+ SA++ G+V T+ GRRR+L +I  S+ +A +AQAERQAVNSV+QG+AAD++K AM+ +  R+  W    +EG         PR+++QIHDEL+ E    ++D+++LK  +I C   E    L +K PL VN  VG SWG
Sbjct:  412 KAQHFFNSFFARFKQTRRWIDMTKESAKKLGFVTTIVGRRRYLDEIR-SNDSAKRAQAERQAVNSVIQGSAADLMKLAMLKIGSRITDWH---KEGHSAGGTGRHPRMLLQIHDELLFEIANNKDDIQRLKDAIICCCAEECELDLKLKVPLKVNCSVGSSWG 570          
BLAST of mRNA_S-dermatodea_contig9838.17809.1 vs. uniprot
Match: A0A6I1ZKY2_9CHLR (DNA-directed DNA polymerase (Fragment) n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6I1ZKY2_9CHLR)

HSP 1 Score: 113 bits (282), Expect = 6.330e-28
Identity = 64/159 (40.25%), Postives = 101/159 (63.52%), Query Frame = 0
Query:    2 QAQGLVRSFLKAFPQIESFLAATRRSARENGYVRTLTGRRRHLPQINNSHSAALKAQAERQAVNSVVQGTAADIIKTAMVLVARRLDAWRSSLEEGLECPRLIMQIHDELVLECPACEEDLEKLKGLLIECMEVEAPAMLGIKCPLTVNMLVGMSWGSM 160
            +A   + ++   +P+++ +L AT++ ARENGYV+T+ GRRR +P+IN+S+   L+  AER A+N  VQGT+ADIIK AM+ + R +D  R          R+++Q+HDELVLE PA  E++E ++ L+ + M     + L +  PL V+   G +WG M
Sbjct:   76 EAAQFIAAYFAKYPKVKEYLEATKKQARENGYVQTILGRRRFIPEINSSNRQ-LREAAERMAINMPVQGTSADIIKVAMINLEREMDKQRLK-------SRMLLQVHDELVLEVPA--EEMETVQKLVPQVMS----SALQLNVPLKVDTKQGQNWGEM 220          
BLAST of mRNA_S-dermatodea_contig9838.17809.1 vs. uniprot
Match: A0A7R9VQU8_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VQU8_9STRA)

HSP 1 Score: 117 bits (294), Expect = 8.820e-28
Identity = 64/162 (39.51%), Postives = 104/162 (64.20%), Query Frame = 0
Query:    3 AQGLVRSFLKAFPQIESFLAATRRSARENGYVRTLTGRRRHLPQINNSHSAALKAQAERQAVNSVVQGTAADIIKTAMVLVARRLDAWRSSLEEGLE----CPRLIMQIHDELVLECPACEEDLEKLKGLLIECMEVEAPAMLGIKCPLTVNMLVGMSWGSM 160
            AQ  + +F + F  +  ++ AT+  AR + +V T++GRRR+L  I  S     +AQAERQAVN+++QG+AADI+K AM+ ++ R+  W+ +  EGL+     PR+++QIHDEL+ E  A E D+++L+  ++ C   E      +K  LT+ + +G+SWGSM
Sbjct:  325 AQNFLNTFFRRFQGVSRWIEATKDFARRHQFVTTISGRRRYLDDIC-SGDKGKRAQAERQAVNTIIQGSAADIMKLAMLKMSARIMDWKKA--EGLDSLGSAPRILLQIHDELLFETDANESDVKRLRDAIMRCCADECVREFDLKVQLTMTLRIGISWGSM 483          
BLAST of mRNA_S-dermatodea_contig9838.17809.1 vs. uniprot
Match: A0A523ZN10_9CHLR (DNA polymerase I n=2 Tax=root TaxID=1 RepID=A0A523ZN10_9CHLR)

HSP 1 Score: 116 bits (290), Expect = 7.760e-27
Identity = 66/163 (40.49%), Postives = 102/163 (62.58%), Query Frame = 0
Query:    2 QAQGLVRSFLKAFPQIESFLAATRRSARENGYVRTLTGRRRHLPQINNSHSAALKAQAERQAVNSVVQGTAADIIKTAMVLVARRLDAWRSSLEEGL----ECPRLIMQIHDELVLECPACEEDLEKLKGLLIECMEVEAPAMLGIKCPLTVNMLVGMSWGSM 160
            +A   + ++ +    ++ ++ AT+R ARE GYV T+ GRRR++P IN+S+   ++A AER A+N  VQGTAADIIK AM+ + R ++      + G+    +  ++I+Q+HDELV E P   E+LE++KGL+ E M    P  L +  PLTV +  G +WG M
Sbjct:  760 EASRFINTYFEKHSGVKEYIEATKRQARERGYVETVLGRRRYIPDINSSNGQ-VRAAAERMAINMPVQGTAADIIKLAMIGIQREMERRGLGAKGGIVGRAKEAKMILQVHDELVFEVP--REELEQMKGLVAEIM----PNALKLSVPLTVEVKTGPNWGEM 915          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9838.17809.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBL3_9PHAE9.100e-10289.47DNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
D7FK42_ECTSI1.150e-8983.15DNA-directed DNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A7S3V8E1_9STRA1.230e-2940.24DNA-directed DNA polymerase n=1 Tax=Chaetoceros de... [more]
A0A3M1LAW2_9CHLR2.310e-2941.10DNA polymerase I (Fragment) n=1 Tax=Chloroflexi ba... [more]
A0A6V2EN94_9STRA3.050e-2943.29Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2LVN7_9STRA7.590e-2935.76Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2LIW8_9STRA2.290e-2842.33Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A6I1ZKY2_9CHLR6.330e-2840.25DNA-directed DNA polymerase (Fragment) n=1 Tax=Deh... [more]
A0A7R9VQU8_9STRA8.820e-2839.51Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A523ZN10_9CHLR7.760e-2740.49DNA polymerase I n=2 Tax=root TaxID=1 RepID=A0A523... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002298DNA polymerase APRINTSPR00868DNAPOLIcoord: 65..81
score: 63.35
coord: 10..21
score: 17.63
coord: 32..43
score: 62.82
IPR002298DNA polymerase APANTHERPTHR10133DNA POLYMERASE Icoord: 2..163
IPR001098DNA-directed DNA polymerase, family A, palm domainSMARTSM00482polaultra3coord: 1..119
e-value: 4.2E-7
score: -10.5
IPR001098DNA-directed DNA polymerase, family A, palm domainPFAMPF00476DNA_pol_Acoord: 2..158
e-value: 1.4E-39
score: 136.3
NoneNo IPR availableGENE3D3.30.70.370coord: 15..161
e-value: 1.2E-22
score: 82.0
NoneNo IPR availablePANTHERPTHR10133:SF27DNA POLYMERASE THETAcoord: 2..163
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 2..160

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9838contigS-dermatodea_contig9838:1845..7793 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9838.17809.1mRNA_S-dermatodea_contig9838.17809.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig9838 1845..7793 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig9838.17809.1 ID=prot_S-dermatodea_contig9838.17809.1|Name=mRNA_S-dermatodea_contig9838.17809.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=179bp
MQAQGLVRSFLKAFPQIESFLAATRRSARENGYVRTLTGRRRHLPQINNS
HSAALKAQAERQAVNSVVQGTAADIIKTAMVLVARRLDAWRSSLEEGLEC
PRLIMQIHDELVLECPACEEDLEKLKGLLIECMEVEAPAMLGIKCPLTVN
MLVGMSWGSMRRVVSHDEDGDNPGGTPP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002298DNA_polymerase_A
IPR001098DNA-dir_DNA_pol_A_palm_dom