prot_S-dermatodea_contig97961.17774.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig97961.17774.1
Unique Nameprot_S-dermatodea_contig97961.17774.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length168
Homology
BLAST of mRNA_S-dermatodea_contig97961.17774.1 vs. uniprot
Match: A0A7U3NQV8_9STRA (DNA-directed RNA polymerase subunit beta'' n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7U3NQV8_9STRA)

HSP 1 Score: 327 bits (837), Expect = 1.090e-101
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0
Query:    1 FQEKDPLNSVYIMAFSGARGNISQVRQLVGMRGLMSDPNGQIIDIPIQSNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVDIAQSVVIRELDCRSQRGIKIKEIIEDNDILFSLQERIVGRVLACNIIDPRTKTIIAYKNELITPRLAEKIMKYNNNSI 168
            FQEKDPLNSVYIMAFSGARGNISQVRQLVGMRGLMSDPNGQIIDIPIQSNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVDIAQSVVIRELDCRSQRGIKIKEIIEDNDILFSLQERIVGRVLACNIIDPRTKTIIAYKNELITPRLAEKIMKYNNNSI
Sbjct:  118 FQEKDPLNSVYIMAFSGARGNISQVRQLVGMRGLMSDPNGQIIDIPIQSNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVDIAQSVVIRELDCRSQRGIKIKEIIEDNDILFSLQERIVGRVLACNIIDPRTKTIIAYKNELITPRLAEKIMKYNNNSI 285          
BLAST of mRNA_S-dermatodea_contig97961.17774.1 vs. uniprot
Match: UPI001FCCDA94 (RNA polymerase beta'' subunit n=1 Tax=Bangia atropurpurea TaxID=31347 RepID=UPI001FCCDA94)

HSP 1 Score: 228 bits (581), Expect = 3.470e-66
Identity = 108/164 (65.85%), Postives = 140/164 (85.37%), Query Frame = 0
Query:    1 FQEKDPLNSVYIMAFSGARGNISQVRQLVGMRGLMSDPNGQIIDIPIQSNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVDIAQSVVIRELDCRSQRGIKIKEIIEDNDILFSLQERIVGRVLACNIIDPRTKTIIAYKNELITPRLAEKIMKYN 164
            F+E DPLNSVY+MAFSGARGNISQVRQLVGMRGLM+DP GQIID+PI SNFREGL++TDY ISSYGARKGLVDTA++TADSGYLTRRLVD++Q V+IRE+DC++++GI ++++++   +L  L++ +VGRVLA NI  P T  +IA+  + I+P LA++I K N
Sbjct:  122 FKETDPLNSVYMMAFSGARGNISQVRQLVGMRGLMADPQGQIIDLPISSNFREGLTVTDYFISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIIREIDCKTKKGIILEDLVDTQKVLIDLEQALVGRVLAENIFHPETGNLIAHTRQDISPNLAKEITKAN 285          
BLAST of mRNA_S-dermatodea_contig97961.17774.1 vs. uniprot
Match: A0A4D6BKQ5_9FLOR (DNA-directed RNA polymerase n=1 Tax=Acrochaetium secundatum TaxID=209631 RepID=A0A4D6BKQ5_9FLOR)

HSP 1 Score: 228 bits (580), Expect = 4.770e-66
Identity = 112/168 (66.67%), Postives = 138/168 (82.14%), Query Frame = 0
Query:    1 FQEKDPLNSVYIMAFSGARGNISQVRQLVGMRGLMSDPNGQIIDIPIQSNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVDIAQSVVIRELDCRSQRGIKIKEIIEDNDILFSLQERIVGRVLACNIIDPRTKTIIAYKNELITPRLAEKIMKYNNNSI 168
            F+E DPLNS+Y+MAFSGARGNISQVRQLVGMRGLMSDP GQIID+PI SNFREGL+ITDY ISSYGARKGLVDTA++TADSGYLTRRLVD++Q V+IRE DC++ RGI I+E+IE+   L +L E ++GR+LA ++ DP +K  IA  N+ I P LA +I+    N +
Sbjct:  122 FKETDPLNSIYVMAFSGARGNISQVRQLVGMRGLMSDPQGQIIDLPISSNFREGLTITDYFISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIIRETDCKTTRGILIEEMIENQASLIALDEALLGRILADDLYDPVSKKTIAKANQEINPLLANRILSTKINKV 289          
BLAST of mRNA_S-dermatodea_contig97961.17774.1 vs. uniprot
Match: A0A8F0F804_9PHAE (DNA-directed RNA polymerase n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F804_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 5.090e-66
Identity = 118/169 (69.82%), Postives = 142/169 (84.02%), Query Frame = 0
Query:    1 FQEKDPLNSVYIMAFSGARGNISQVRQLVGMRGLMSDPNGQIIDIPIQSNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVDIAQSVVIRELDCRSQRGIKIKEIIEDNDILF-SLQERIVGRVLACNIIDPRTKTIIAYKNELITPRLAEKIMKYNNNSI 168
            F++ DPLNSVYIMAFSGARGNI+QVRQLVGMRGLMSDPNG+IID  I +NFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLV++AQS++I ELDC+++RGI I+E +E ++  F SL E + GRVLA +I  P TK  IA +N+ ITP L EK++K+  N +
Sbjct:  118 FKKNDPLNSVYIMAFSGARGNIAQVRQLVGMRGLMSDPNGKIIDRAIGANFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIISELDCKTERGIFIEEDLEKDEKGFLSLNELLNGRVLASSIFKPGTKDSIALRNQQITPSLLEKLLKFKINKV 286          
BLAST of mRNA_S-dermatodea_contig97961.17774.1 vs. uniprot
Match: A0A1C9C810_9FLOR (DNA-directed RNA polymerase n=1 Tax=Riquetophycus sp. TaxID=1897556 RepID=A0A1C9C810_9FLOR)

HSP 1 Score: 226 bits (577), Expect = 1.220e-65
Identity = 109/168 (64.88%), Postives = 141/168 (83.93%), Query Frame = 0
Query:    1 FQEKDPLNSVYIMAFSGARGNISQVRQLVGMRGLMSDPNGQIIDIPIQSNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVDIAQSVVIRELDCRSQRGIKIKEIIEDNDILFSLQERIVGRVLACNIIDPRTKTIIAYKNELITPRLAEKIMKYNNNSI 168
            F+  DPLNS+Y+MAFSGARGNISQVRQLVGMRGLMSDP GQIID+PI SNFREGL+ITDY ISSYGARKGLVDTA++TADSGYLTRRLVD+AQ ++IRE +C++ RGI ++ +I++  IL  L++ +VGRVLA +++DP + +IIAY ++ +T  LA+K++    N I
Sbjct:  120 FKNTDPLNSIYMMAFSGARGNISQVRQLVGMRGLMSDPQGQIIDLPIASNFREGLTITDYFISSYGARKGLVDTALRTADSGYLTRRLVDVAQDIIIRESNCKTTRGILLESMIDNQKILIDLKQALVGRVLAEDVLDPISNSIIAYADQAVTSMLADKLIDLGVNKI 287          
BLAST of mRNA_S-dermatodea_contig97961.17774.1 vs. uniprot
Match: A0A1G4NVS4_9FLOR (DNA-directed RNA polymerase subunit beta'' n=1 Tax=Liagoropsis maxima TaxID=1653392 RepID=A0A1G4NVS4_9FLOR)

HSP 1 Score: 226 bits (576), Expect = 1.680e-65
Identity = 109/160 (68.12%), Postives = 140/160 (87.50%), Query Frame = 0
Query:    1 FQEKDPLNSVYIMAFSGARGNISQVRQLVGMRGLMSDPNGQIIDIPIQSNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVDIAQSVVIRELDCRSQRGIKIKEIIEDNDILFSLQERIVGRVLACNIIDPRTKTIIAYKNELITPRLAEKI 160
            F+E DPLNS+Y++AFSGARGNISQVRQLVGMRGLMSDP GQIID+PI SNFREGL++TDY ISSYGARKGLVDTA++TADSGYLTRRLVD+AQ V+IRE+DC+++RGI ++++IE+   L SL++ ++GR LA ++ DP+ KT IA  N+ I P+LA++I
Sbjct:  122 FKETDPLNSIYMIAFSGARGNISQVRQLVGMRGLMSDPQGQIIDLPISSNFREGLTVTDYFISSYGARKGLVDTALRTADSGYLTRRLVDVAQDVIIREIDCKTRRGIILEDMIENQRKLISLKQALLGRTLADDLYDPQNKTRIAKLNQEIDPQLAKRI 281          
BLAST of mRNA_S-dermatodea_contig97961.17774.1 vs. uniprot
Match: M4ITR7_CALTB (DNA-directed RNA polymerase subunit beta'' n=1 Tax=Calliarthron tuberculosum TaxID=48942 RepID=M4ITR7_CALTB)

HSP 1 Score: 226 bits (576), Expect = 1.700e-65
Identity = 107/162 (66.05%), Postives = 138/162 (85.19%), Query Frame = 0
Query:    1 FQEKDPLNSVYIMAFSGARGNISQVRQLVGMRGLMSDPNGQIIDIPIQSNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVDIAQSVVIRELDCRSQRGIKIKEIIEDNDILFSLQERIVGRVLACNIIDPRTKTIIAYKNELITPRLAEKIMK 162
            F+E DPLN++Y+MAFSGARGNISQVRQLVGMRGLMSDP GQIID+PI SNFREGL++TDY ISSYGARKGLVDTA++TADSGYLTRRLVD+AQ V+IRE+DC++ +GI ++ II++  IL SL++ ++GR+LA ++  P+T  +IAY N+ I   LA  I++
Sbjct:  120 FKETDPLNAIYMMAFSGARGNISQVRQLVGMRGLMSDPQGQIIDLPISSNFREGLTVTDYFISSYGARKGLVDTALRTADSGYLTRRLVDVAQDVIIREIDCKTSKGILLENIIDNQKILISLEQALIGRLLAEDLFHPKTNKLIAYVNQDINENLAHNIVE 281          
BLAST of mRNA_S-dermatodea_contig97961.17774.1 vs. uniprot
Match: A0A1C9CHN3_PLOCA (DNA-directed RNA polymerase n=1 Tax=Plocamium cartilagineum TaxID=31452 RepID=A0A1C9CHN3_PLOCA)

HSP 1 Score: 226 bits (575), Expect = 2.250e-65
Identity = 109/168 (64.88%), Postives = 143/168 (85.12%), Query Frame = 0
Query:    1 FQEKDPLNSVYIMAFSGARGNISQVRQLVGMRGLMSDPNGQIIDIPIQSNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVDIAQSVVIRELDCRSQRGIKIKEIIEDNDILFSLQERIVGRVLACNIIDPRTKTIIAYKNELITPRLAEKIMKYNNNSI 168
            F+  DPLN++Y+MAFSGAR NISQVRQLVGMRGLMSDP GQIID+PI SNFREGL+ITDY ISSYGARKGLVDTA++TADSGYLTRRLVD+AQ V+IRE DC+++RGI ++E+I++  +L +L++ ++GRVLA NI+DP +  +IA+  + I P LA+KI++ +  S+
Sbjct:  120 FKNTDPLNTIYMMAFSGARANISQVRQLVGMRGLMSDPQGQIIDLPIASNFREGLTITDYFISSYGARKGLVDTALRTADSGYLTRRLVDVAQDVIIRESDCKTERGIVLEEMIDNQKVLITLRQSLLGRVLAENILDPFSYEVIAFAGQGIDPVLADKIVQMDVRSV 287          
BLAST of mRNA_S-dermatodea_contig97961.17774.1 vs. uniprot
Match: A0A1C9C9R7_9FLOR (DNA-directed RNA polymerase n=1 Tax=Sebdenia flabellata TaxID=42024 RepID=A0A1C9C9R7_9FLOR)

HSP 1 Score: 226 bits (575), Expect = 2.320e-65
Identity = 109/160 (68.12%), Postives = 134/160 (83.75%), Query Frame = 0
Query:    1 FQEKDPLNSVYIMAFSGARGNISQVRQLVGMRGLMSDPNGQIIDIPIQSNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVDIAQSVVIRELDCRSQRGIKIKEIIEDNDILFSLQERIVGRVLACNIIDPRTKTIIAYKNELITPRLAEKI 160
            F+  DPLNS+Y+MAFSGAR NISQVRQLVGMRGLMSDP GQIID+PI SNFREGL+ITDY ISSYGARKGLVDTA++TADSGYLTRRLVD+AQ V++RE DC++ +GI ++E+I++  IL   ++ ++GRVLA NI+DP +  IIA+  E I P LA KI
Sbjct:  120 FKNTDPLNSIYMMAFSGARANISQVRQLVGMRGLMSDPQGQIIDLPISSNFREGLTITDYFISSYGARKGLVDTALRTADSGYLTRRLVDVAQDVIVREFDCQTVKGILLEEMIDNQKILIDFKQALLGRVLAENILDPHSNNIIAFSGEAIDPVLANKI 279          
BLAST of mRNA_S-dermatodea_contig97961.17774.1 vs. uniprot
Match: A0A1I9LV94_9PHAE (DNA-directed RNA polymerase n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LV94_9PHAE)

HSP 1 Score: 226 bits (575), Expect = 2.420e-65
Identity = 116/165 (70.30%), Postives = 139/165 (84.24%), Query Frame = 0
Query:    1 FQEKDPLNSVYIMAFSGARGNISQVRQLVGMRGLMSDPNGQIIDIPIQSNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVDIAQSVVIRELDCRSQRGIKIKEIIEDNDI--LFSLQERIVGRVLACNIIDPRTKTIIAYKNELITPRLAEKIMKY 163
            F++ DPLNSVYIMAFSGARGNISQVRQLVGMRGLM DP+G+IID  I +NFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLV++AQS++I ELDCR+QRG+ ++E I+D D     SL E + GRVLA +I +P TK IIA++N+ IT  L E ++K+
Sbjct:  118 FKKTDPLNSVYIMAFSGARGNISQVRQLVGMRGLMCDPSGRIIDKAIAANFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIISELDCRTQRGVFLQEGIDDEDEKGFLSLTELLKGRVLASSIFEPGTKKIIAFRNQQITSSLVEMLIKF 282          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig97961.17774.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7U3NQV8_9STRA1.090e-101100.00DNA-directed RNA polymerase subunit beta'' n=1 Tax... [more]
UPI001FCCDA943.470e-6665.85RNA polymerase beta'' subunit n=1 Tax=Bangia atrop... [more]
A0A4D6BKQ5_9FLOR4.770e-6666.67DNA-directed RNA polymerase n=1 Tax=Acrochaetium s... [more]
A0A8F0F804_9PHAE5.090e-6669.82DNA-directed RNA polymerase n=2 Tax=Laminariales T... [more]
A0A1C9C810_9FLOR1.220e-6564.88DNA-directed RNA polymerase n=1 Tax=Riquetophycus ... [more]
A0A1G4NVS4_9FLOR1.680e-6568.13DNA-directed RNA polymerase subunit beta'' n=1 Tax... [more]
M4ITR7_CALTB1.700e-6566.05DNA-directed RNA polymerase subunit beta'' n=1 Tax... [more]
A0A1C9CHN3_PLOCA2.250e-6564.88DNA-directed RNA polymerase n=1 Tax=Plocamium cart... [more]
A0A1C9C9R7_9FLOR2.320e-6568.13DNA-directed RNA polymerase n=1 Tax=Sebdenia flabe... [more]
A0A1I9LV94_9PHAE2.420e-6570.30DNA-directed RNA polymerase n=1 Tax=Pleurocladia l... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007081RNA polymerase Rpb1, domain 5PFAMPF04998RNA_pol_Rpb1_5coord: 54..142
e-value: 5.9E-24
score: 84.9
IPR007083RNA polymerase Rpb1, domain 4PFAMPF05000RNA_pol_Rpb1_4coord: 7..42
e-value: 1.3E-11
score: 44.4
IPR038120RNA polymerase Rpb1, funnel domain superfamilyGENE3D1.10.132.30coord: 1..78
e-value: 8.9E-39
score: 134.7
NoneNo IPR availablePANTHERPTHR19376:SF43coord: 1..160
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 1..160
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 4..158

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig97961contigS-dermatodea_contig97961:1..504 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig97961.17774.1mRNA_S-dermatodea_contig97961.17774.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig97961 1..504 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig97961.17774.1 ID=prot_S-dermatodea_contig97961.17774.1|Name=mRNA_S-dermatodea_contig97961.17774.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=168bp
FQEKDPLNSVYIMAFSGARGNISQVRQLVGMRGLMSDPNGQIIDIPIQSN
FREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVDIAQSVVIREL
DCRSQRGIKIKEIIEDNDILFSLQERIVGRVLACNIIDPRTKTIIAYKNE
LITPRLAEKIMKYNNNSI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007081RNA_pol_Rpb1_5
IPR007083RNA_pol_Rpb1_4
IPR038120Rpb1_funnel_sf