prot_S-dermatodea_contig954.17564.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig954.17564.1
Unique Nameprot_S-dermatodea_contig954.17564.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length293
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig954.17564.1 vs. uniprot
Match: A0A6H5KKS1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKS1_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 2.020e-43
Identity = 109/265 (41.13%), Postives = 145/265 (54.72%), Query Frame = 0 
Query:   13 ASGYLGAVGVGGGSIREGGVNVWPVAKGNSGWDTPMVGSKSELIP----NDSCHCLAWIPGEDSVLLAGT--KFLRIADLRVNVRGAS---MRTVDVHGGGGVSGIAFRPTNPTTLATWSDTLGEPVKIWDVRKL------------QDAPPAHGPPNYPPVAILPSPAASS-VIDVAWCPDRPDILATVHSDNPRRVCLWDVWKPEDSREPRVWDADRRKIPSDYRYTKDPISSISWQPRGLKPRPIAAPSCSTPWVQGAGAEG 255
            ASG   A  V GG    G   +WP+ KG+ GWD+ +  +++        N+    LAW+PG DSVLLAGT  KFL+  D+R     +S   +R ++VH GG V GIA  P +P  +ATWSD+ GEPVK+W  R L            +DA  +  P     VA L  P  +S V+DVAWCP R D++ATVHS++ +RVCLWD+++            +  KIPS Y  TK P+S +SWQP  + PRPIA      PW    G  G
Sbjct:  677 ASGSNAAAVVAGGGSAAGSGEIWPIPKGDCGWDSAVAAAENTHADLGGLNEGYVSLAWLPGTDSVLLAGTGSKFLKSIDVRGRGADSSNSVLRIMEVHKGG-VVGIAVLPEDPRIVATWSDSAGEPVKLWKSRSLVGRNAGGGNVKARDASQSSNP-----VATLRPPDKTSFVVDVAWCPSRNDLIATVHSNDRKRVCLWDLFEGI---------KNMCKIPSRYELTKHPVSRVSWQPPRVTPRPIA------PWALSGGGSG 920
[Close]
BLAST of mRNA_S-dermatodea_contig954.17564.1 vs. uniprot
Match: D7G6M1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6M1_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 3.920e-22
Identity = 81/234 (34.62%), Postives = 112/234 (47.86%), Query Frame = 0 
Query:   34 VWPVAKGNSGWDTPMVGSKS---ELIPNDSCHCLAWIPGEDSVLLAGT--KFLRIADLRVN----VRGASM-----RTVDVHGGGGVSGIAFRPTNPTTLATWSDTLGEPVKIWDVRKLQDAPPAHGPPNYPPVAILPSPAASSVIDVAWCPDRPDILATVHSDNPRRVCLWDVWKPEDSREPRVWDADRRKIPSDYRYTKDPISSISWQPRGLKPRPIAAPSCSTPW-VQGAG 252
            +WP+ KG+ GWD+ +  +++   +L  N+    LAW+PG DSVLLAGT  KFL+  D+R      +R A       RT++VH GG V  IA  P +P  +ATWSD++GEPVK+W  R L       G  N   V    +  +S+ +     PD+   +                                  IPS Y  TK P+S +SWQP  + PRPIA      PW + GAG
Sbjct:  285 IWPIPKGDGGWDSAVAAAENAHADLGGNEGYASLAWLPGTDSVLLAGTGSKFLKSIDVRGRGDDALRSADSSNVVPRTMEVHKGG-VIRIAVLPEDPRIVATWSDSVGEPVKLWKSRSLVGRNGGGG--N---VKARDASQSSNPVATLRPPDKTSFVVD--------------------------------IPSRYELTKHPVSRVSWQPPRVTPRPIA------PWALSGAG 474
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig954.17564.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKS1_9PHAE2.020e-4341.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6M1_ECTSI3.920e-2234.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 91..134
e-value: 1.4
score: 16.1
coord: 48..85
e-value: 430.0
score: 0.4
coord: 149..192
e-value: 0.76
score: 17.8
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 22..246
e-value: 3.5E-21
score: 77.7
NoneNo IPR availablePANTHERPTHR22850WD40 REPEAT FAMILYcoord: 32..200
NoneNo IPR availablePANTHERPTHR22850:SF27HISTONE-BINDING PROTEIN CAF1-RELATEDcoord: 32..200
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 54..232

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig954contigS-dermatodea_contig954:14622..23697 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig954.17564.1mRNA_S-dermatodea_contig954.17564.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig954 14622..23697 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig954.17564.1 ID=prot_S-dermatodea_contig954.17564.1|Name=mRNA_S-dermatodea_contig954.17564.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=293bp
MGFSGLGLLSRAASGYLGAVGVGGGSIREGGVNVWPVAKGNSGWDTPMVG
SKSELIPNDSCHCLAWIPGEDSVLLAGTKFLRIADLRVNVRGASMRTVDV
HGGGGVSGIAFRPTNPTTLATWSDTLGEPVKIWDVRKLQDAPPAHGPPNY
PPVAILPSPAASSVIDVAWCPDRPDILATVHSDNPRRVCLWDVWKPEDSR
EPRVWDADRRKIPSDYRYTKDPISSISWQPRGLKPRPIAAPSCSTPWVQG
AGAEGEDEAGGDSDTAVAAAAGAVAGTGLGDPDLSAGSAPTHA
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf