prot_S-dermatodea_contig9501.17530.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig9501.17530.1
Unique Nameprot_S-dermatodea_contig9501.17530.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length302
Homology
BLAST of mRNA_S-dermatodea_contig9501.17530.1 vs. uniprot
Match: A0A6H5JB06_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JB06_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 4.740e-56
Identity = 131/270 (48.52%), Postives = 171/270 (63.33%), Query Frame = 0
Query:    1 GARLSSRRGRRRAGSGGRNSYLGSPRMSTPGSDGADGLG--GMREDEKFPDK---IPSFSTDGAAQQSIKSGGAGE-EEVEEDDGSWSDAEVERRVAERKNTKVDPYAVDDDEEEDDPG----EEYLEIVANMTKPLGITIEASTDKDELIYLTSAGEQA-TCGLQVGDVLTGVSGVYGNDVWSVKGKSIEKVRSLVRCRSEPFILVRVERGHDSLEERCAEGYGITSEEDCWRLTDE------GECEV--DYTDLWTSVYQEENDVLSG 251
            GARL   RG++R  S    S LG P  S+P   G+D     GM E EK  +K   I S S +G  +  +      E +E+EED     +AEV+R  A  K   +D + +  DE++D       E Y EI+ANMTKPLGITIE STDK +L+Y+TS G++A   GLQVGDVLTGVS V+G++VWSV  K+IE++RSLVRCR EP+ L+RVERGH SLEERCA G+      +CW+L D+       ECE+  DY +LW +VY+EE DVL+G
Sbjct:   99 GARLRVERGQQRRFS----SSLGRPLRSSPSDGGSDDPSSQGMSESEKLREKLETIASASGEGGGEDGLTQKEQEELDEMEED--RRVEAEVDRLEAAEKAKSMDAFRMSLDEDDDXXXNAEDEVYEEIIANMTKPLGITIEESTDKAKLVYITSVGDKAEAAGLQVGDVLTGVSAVFGDEVWSVNDKNIEEIRSLVRCRPEPYSLIRVERGHVSLEERCAPGFDEEDLSNCWQLPDDMIPGDGEECELNPDYQNLWAAVYEEEMDVLTG 362          
BLAST of mRNA_S-dermatodea_contig9501.17530.1 vs. uniprot
Match: A0A7S1XUN2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUN2_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.060e-10
Identity = 41/104 (39.42%), Postives = 65/104 (62.50%), Query Frame = 0
Query:  108 EEDDP------GEEYLEIVANMTKPLGI-TIEASTDKDELIYLTSAGEQAT-CGLQVGDVLTGVSGVYGNDVWSVKGKSIEKVRSLVRCRSEPF-ILVRVERGH 202
            EE DP       EE L++   + +PLGI   E+   +   + +T AGE+A   GL+VGD++TGVSG++G+D+W ++   + KVR L+  R +   +++RVERGH
Sbjct:   29 EEGDPWAKIPEAEEVLKV--EIMRPLGIRAFESLAARVPTVVVTKAGEKAIEAGLEVGDIITGVSGIFGDDIWDIREGGLAKVRELIEFRGKDLPVVLRVERGH 130          
BLAST of mRNA_S-dermatodea_contig9501.17530.1 vs. uniprot
Match: A0A7R9UEL0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEL0_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 8.260e-8
Identity = 35/94 (37.23%), Postives = 57/94 (60.64%), Query Frame = 0
Query:  112 PGEEYLEIVANMTKPLGITI-EASTDKDELIYLTSAGEQATC-GLQVGDVLTGVSGVYGNDVWSVKGKSIEKVRSLVRCRSEPF-ILVRVERGH 202
            P ++ LE+   + +PLGI + E+       + +T  GE+A   G+  GDV+ GVSGV+G D+W+ KGK + +V+ L+  R     + +R+ERGH
Sbjct:   55 PAQQVLEV--ELLRPLGIRVFESQVAFHRTVVITHVGEKAQEEGVLRGDVIVGVSGVFGEDIWNTKGKGLARVQELITYRGAGLPVRLRLERGH 146          
BLAST of mRNA_S-dermatodea_contig9501.17530.1 vs. uniprot
Match: A0A1E7FAC3_9STRA (PDZ domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAC3_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 7.280e-6
Identity = 41/100 (41.00%), Postives = 57/100 (57.00%), Query Frame = 0
Query:  112 PGEEYLEIVANMTKPLGITIEAST-DKDELIY---LTSAGEQATCGLQVGDVLTGVSGVYGNDVWSVKGKSIEKVRSLVRCRS-EPFILVRVERGHDSLE 206
            P  E L I     +PLG T+E S  D+D+ I+   LT  G  A  GLQVGDV+ GV+G +G  +  V G S+EK++ LV     E  + ++V RG + LE
Sbjct:  107 PDGEILTIEMVDHQPLGCTVEESIEDEDDYIFISKLTDKGSAANAGLQVGDVVVGVTGTFGQ-LTDVLGASVEKIKRLVSAIPVEDPLTLQVVRGTNILE 205          
BLAST of mRNA_S-dermatodea_contig9501.17530.1 vs. uniprot
Match: A0A1Z5JQE1_FISSO (PDZ domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JQE1_FISSO)

HSP 1 Score: 56.6 bits (135), Expect = 1.440e-5
Identity = 40/109 (36.70%), Postives = 60/109 (55.05%), Query Frame = 0
Query:  115 EYLEIVANMTKPLGITIEASTD------------KDELIYLTSA---GEQATCGLQVGDVLTGVSGVYGNDVWSVKGKSIEKVRSLVRCRSEPFIL-VRVERGHDSLEE 207
            ++LE+V +  KPLG T+E S              K + ++L++    G     GL VGDV+ GV+G++G ++ +V G  I+KVR LV  RSE   L +RV RG   L +
Sbjct:   61 DFLEVVLSEHKPLGCTVEESLASAVIEVGDNTQMKLDYVFLSAVKPGGNAEMAGLLVGDVVVGVTGIFG-ELENVAGLGIDKVRGLVAARSEDQPLTIRVARGTSVLND 168          
BLAST of mRNA_S-dermatodea_contig9501.17530.1 vs. uniprot
Match: A0A1Z5JPK7_FISSO (PDZ domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPK7_FISSO)

HSP 1 Score: 56.6 bits (135), Expect = 1.480e-5
Identity = 42/109 (38.53%), Postives = 61/109 (55.96%), Query Frame = 0
Query:  115 EYLEIVANMTKPLGITIEAST--------DKDEL----IYLTSA---GEQATCGLQVGDVLTGVSGVYGNDVWSVKGKSIEKVRSLVRCRSEPFIL-VRVERGHDSLEE 207
            E+LE+V +  KPLG T+E S         DK ++    ++L++    G     GL VGDV+ GV+G++G  + +V G  I+KVR LV  RSE   L +RV RG   L +
Sbjct:   61 EFLEVVLSEHKPLGCTVEESLAAAIIELGDKTQMKLDYVFLSAVKPGGNAEKAGLLVGDVVVGVTGIFGL-LENVVGLGIDKVRGLVAARSEDQPLTIRVARGTSVLND 168          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9501.17530.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JB06_9PHAE4.740e-5648.52PDZ domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S1XUN2_9STRA3.060e-1039.42Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9UEL0_9STRA8.260e-837.23Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A1E7FAC3_9STRA7.280e-641.00PDZ domain-containing protein n=1 Tax=Fragilariops... [more]
A0A1Z5JQE1_FISSO1.440e-536.70PDZ domain-containing protein n=1 Tax=Fistulifera ... [more]
A0A1Z5JPK7_FISSO1.480e-538.53PDZ domain-containing protein n=1 Tax=Fistulifera ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.42.10coord: 105..211
e-value: 4.8E-5
score: 25.1
IPR001478PDZ domainPROSITEPS50106PDZcoord: 116..187
score: 8.747
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 116..203

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9501contigS-dermatodea_contig9501:3..3262 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9501.17530.1mRNA_S-dermatodea_contig9501.17530.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig9501 3..3262 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig9501.17530.1 ID=prot_S-dermatodea_contig9501.17530.1|Name=mRNA_S-dermatodea_contig9501.17530.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=302bp
GARLSSRRGRRRAGSGGRNSYLGSPRMSTPGSDGADGLGGMREDEKFPDK
IPSFSTDGAAQQSIKSGGAGEEEVEEDDGSWSDAEVERRVAERKNTKVDP
YAVDDDEEEDDPGEEYLEIVANMTKPLGITIEASTDKDELIYLTSAGEQA
TCGLQVGDVLTGVSGVYGNDVWSVKGKSIEKVRSLVRCRSEPFILVRVER
GHDSLEERCAEGYGITSEEDCWRLTDEGECEVDYTDLWTSVYQEENDVLS
GGAAVAAAGGAAAGEPKRTNGGGRVFFGGGGGGGGGGGGGGGGGVGLDLH
M*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
IPR036034PDZ_sf