prot_S-dermatodea_contig94153.17449.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-dermatodea_contig94153.17449.1
Unique Name	prot_S-dermatodea_contig94153.17449.1
Type	polypeptide
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length	93

Homology

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BLAST of mRNA_S-dermatodea_contig94153.17449.1 vs. uniprot
Match: PSBA_ECTSI (Photosystem II protein D1 n=1129 Tax=Eukaryota TaxID=2759 RepID=PSBA_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 9.380e-54
Identity = 85/92 (92.39%), Postives = 90/92 (97.83%), Query Frame = 0

Query:    1 RALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSIVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLAANEILPVAISAQTSIG 92
            RALHFFLAAWPVVGIWLT+LGVSTMAFNLNGFNFNQS+VDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLA+NEILPVAISA + +G
Sbjct:  269 RALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSVVG 360

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BLAST of mRNA_S-dermatodea_contig94153.17449.1 vs. uniprot
Match: A0A1N7TJI8_9PHAE (Photosystem II protein D1 n=412 Tax=Eukaryota TaxID=2759 RepID=A0A1N7TJI8_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 1.050e-52
Identity = 81/92 (88.04%), Postives = 89/92 (96.74%), Query Frame = 0

Query:    1 RALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSIVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLAANEILPVAISAQTSIG 92
            RALHFFLAAWPV+ IWLTSLG+STMAFNLNGFNFNQS+VDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLA+NE+LPVA+SA + +G
Sbjct:  269 RALHFFLAAWPVIAIWLTSLGISTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEVLPVAVSAPSIVG 360

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BLAST of mRNA_S-dermatodea_contig94153.17449.1 vs. uniprot
Match: A0A1Z4GBZ5_9CYAN (Photosystem II D1 protein n=2 Tax=Nostocales TaxID=1161 RepID=A0A1Z4GBZ5_9CYAN)

HSP 1 Score: 164 bits (416), Expect = 2.690e-50
Identity = 76/92 (82.61%), Postives = 85/92 (92.39%), Query Frame = 0

Query:    1 RALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSIVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLAANEILPVAISAQTSIG 92
            R+LHFFLAAWPV+GIW T+LGVSTMAFNLNGFNFNQS++DS+GRVINTWADIINRA+LGMEVMHERNAHNFPLDLAA ++ PVAISA    G
Sbjct:   71 RSLHFFLAAWPVIGIWFTALGVSTMAFNLNGFNFNQSVIDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAALDVAPVAISAPAING 162

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BLAST of mRNA_S-dermatodea_contig94153.17449.1 vs. uniprot
Match: A0A252DQJ2_9NOSO (Photosystem Q(B) protein 1 (Fragment) n=5 Tax=Cyanobacteria TaxID=1117 RepID=A0A252DQJ2_9NOSO)

HSP 1 Score: 162 bits (411), Expect = 6.070e-50
Identity = 75/92 (81.52%), Postives = 83/92 (90.22%), Query Frame = 0

Query:    1 RALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSIVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLAANEILPVAISAQTSIG 92
            R+LHFFLAAWPVVGIW T+LGVSTMAFNLNGFNFNQS++DS GRVI TWAD+INRA+LGMEVMHERNAHNFPLDLAA E+ PVA+SA    G
Sbjct:   41 RSLHFFLAAWPVVGIWFTALGVSTMAFNLNGFNFNQSVIDSTGRVIGTWADVINRANLGMEVMHERNAHNFPLDLAAGEVAPVALSAPAING 132

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BLAST of mRNA_S-dermatodea_contig94153.17449.1 vs. uniprot
Match: PSBA_PHATC (Photosystem II protein D1 n=590 Tax=root TaxID=1 RepID=PSBA_PHATC)

HSP 1 Score: 168 bits (426), Expect = 2.080e-49
Identity = 78/92 (84.78%), Postives = 86/92 (93.48%), Query Frame = 0

Query:    1 RALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSIVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLAANEILPVAISAQTSIG 92
            RALHFFLA WPVVGIWLT++GVSTMAFNLNGFNFNQS+VDS+GRVINTWADIINRADLGMEVMHERNAHNFPLDLA+ E+LPVA++A    G
Sbjct:  269 RALHFFLALWPVVGIWLTAMGVSTMAFNLNGFNFNQSVVDSQGRVINTWADIINRADLGMEVMHERNAHNFPLDLASGEVLPVALTAPAVNG 360

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BLAST of mRNA_S-dermatodea_contig94153.17449.1 vs. uniprot
Match: A0A023JEK8_9STRA (Photosystem II protein D1 n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A023JEK8_9STRA)

HSP 1 Score: 168 bits (425), Expect = 2.940e-49
Identity = 77/92 (83.70%), Postives = 86/92 (93.48%), Query Frame = 0

Query:    1 RALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSIVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLAANEILPVAISAQTSIG 92
            RALHFFLA WPVVGIWLT++G+STMAFNLNGFNFNQS+VDS+GRVINTWADIINRADLGMEVMHERNAHNFPLDLA+ E+LPVA++A    G
Sbjct:  269 RALHFFLALWPVVGIWLTAMGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRADLGMEVMHERNAHNFPLDLASGEVLPVALTAPAVNG 360

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BLAST of mRNA_S-dermatodea_contig94153.17449.1 vs. uniprot
Match: A0A7X6CIA5_9CYAN (Photosystem II q(B) protein n=1 Tax=Microcoleus sp. SU_5_3 TaxID=2720482 RepID=A0A7X6CIA5_9CYAN)

HSP 1 Score: 159 bits (403), Expect = 4.190e-49
Identity = 73/92 (79.35%), Postives = 83/92 (90.22%), Query Frame = 0

Query:    1 RALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSIVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLAANEILPVAISAQTSIG 92
            R+LHF L AWPVVGIW T+LG+STMAFNLNGFNFNQSI+DS+GRVINTWAD+INRA+LGMEVMHERNAHNFPLDLAA E+ PVA+ A +  G
Sbjct:   13 RSLHFLLGAWPVVGIWFTALGISTMAFNLNGFNFNQSIIDSQGRVINTWADVINRANLGMEVMHERNAHNFPLDLAAAEVTPVALVAPSING 104

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BLAST of mRNA_S-dermatodea_contig94153.17449.1 vs. uniprot
Match: UPI0019C18432 (Photosystem II q(B) protein n=3 Tax=Microcoleus sp. FACHB-831 TaxID=2692827 RepID=UPI0019C18432)

HSP 1 Score: 159 bits (403), Expect = 6.090e-49
Identity = 72/92 (78.26%), Postives = 81/92 (88.04%), Query Frame = 0

Query:    1 RALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSIVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLAANEILPVAISAQTSIG 92
            R+LHFFL AWPV+GIW T+LG+STMAFNLNGFNFNQS++DS GRVINTWAD+INRA+LGMEVMHERNAHNFPLDLAA E  PVA+ A    G
Sbjct:   25 RSLHFFLGAWPVIGIWFTALGISTMAFNLNGFNFNQSVIDSTGRVINTWADVINRANLGMEVMHERNAHNFPLDLAAGEAAPVALQAPAING 116

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BLAST of mRNA_S-dermatodea_contig94153.17449.1 vs. uniprot
Match: A0A252EBA4_9NOSO (Photosystem Q(B) protein 1 (Fragment) n=3 Tax=Nostoc TaxID=1177 RepID=A0A252EBA4_9NOSO)

HSP 1 Score: 158 bits (399), Expect = 1.110e-48
Identity = 73/90 (81.11%), Postives = 80/90 (88.89%), Query Frame = 0

Query:    3 LHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSIVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLAANEILPVAISAQTSIG 92
            LHFFLAAWPVVGIW T+LGVSTMAFNLNGFNFN S++DS GRVI TWAD+INRA+LGMEVMHERNAHNFPLDLAA E+ PVA+SA    G
Sbjct:    1 LHFFLAAWPVVGIWFTALGVSTMAFNLNGFNFNSSVIDSTGRVIGTWADVINRANLGMEVMHERNAHNFPLDLAAGEVAPVALSAPAING 90

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BLAST of mRNA_S-dermatodea_contig94153.17449.1 vs. uniprot
Match: A0A7S2RD40_9STRA (Photosystem II protein D1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RD40_9STRA)

HSP 1 Score: 166 bits (420), Expect = 2.180e-48
Identity = 75/92 (81.52%), Postives = 85/92 (92.39%), Query Frame = 0

Query:    1 RALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSIVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLAANEILPVAISAQTSIG 92
            RALHFFLA WPV+GIW+T++G+STMAFNLNGFNFNQS+VDSEGRVINTWADI+NRADLG+EVMHERNAHNFPLDLAA E+ PVA+SA    G
Sbjct:  281 RALHFFLALWPVLGIWITAMGISTMAFNLNGFNFNQSVVDSEGRVINTWADILNRADLGIEVMHERNAHNFPLDLAAGEVFPVAVSAPAVNG 372

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig94153.17449.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig94153.17449.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
PSBA_ECTSI	9.380e-54	92.39	Photosystem II protein D1 n=1129 Tax=Eukaryota Tax...	[more]
A0A1N7TJI8_9PHAE	1.050e-52	88.04	Photosystem II protein D1 n=412 Tax=Eukaryota TaxI...	[more]
A0A1Z4GBZ5_9CYAN	2.690e-50	82.61	Photosystem II D1 protein n=2 Tax=Nostocales TaxID...	[more]
A0A252DQJ2_9NOSO	6.070e-50	81.52	Photosystem Q(B) protein 1 (Fragment) n=5 Tax=Cyan...	[more]
PSBA_PHATC	2.080e-49	84.78	Photosystem II protein D1 n=590 Tax=root TaxID=1 R...	[more]
A0A023JEK8_9STRA	2.940e-49	83.70	Photosystem II protein D1 n=4 Tax=Bacillariophyta ...	[more]
A0A7X6CIA5_9CYAN	4.190e-49	79.35	Photosystem II q(B) protein n=1 Tax=Microcoleus sp...	[more]
UPI0019C18432	6.090e-49	78.26	Photosystem II q(B) protein n=3 Tax=Microcoleus sp...	[more]
A0A252EBA4_9NOSO	1.110e-48	81.11	Photosystem Q(B) protein 1 (Fragment) n=3 Tax=Nost...	[more]
A0A7S2RD40_9STRA	2.180e-48	81.52	Photosystem II protein D1 n=1 Tax=Rhizochromulina ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000484	Photosynthetic reaction centre, L/M	PFAM	PF00124	Photo_RC	coord: 2..53 e-value: 1.9E-6 score: 27.3
IPR000484	Photosynthetic reaction centre, L/M	PANTHER	PTHR33149	FAMILY NOT NAMED	coord: 1..88
None	No IPR available	PANTHER	PTHR33149:SF12		coord: 1..88
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..27
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 28..92
None	No IPR available	TMHMM	TMhelix		coord: 5..27
IPR036854	Photosystem II protein D1/D2 superfamily	SUPERFAMILY	81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 2..75

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig94153	contig	S-dermatodea_contig94153:273..551 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig94153.17449.1	mRNA_S-dermatodea_contig94153.17449.1	Saccorhiza dermatodea SderLu1190fm monoicous	mRNA	S-dermatodea_contig94153 273..551 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-dermatodea_contig94153.17449.1 ID=prot_S-dermatodea_contig94153.17449.1|Name=mRNA_S-dermatodea_contig94153.17449.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=93bp
RALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSIVDSEGRVINTWA
DIINRADLGMEVMHERNAHNFPLDLAANEILPVAISAQTSIG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000484	Photo_RC_L/M
IPR036854	Photo_II_D1/D2_sf