prot_S-dermatodea_contig93005.17357.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-dermatodea_contig93005.17357.1
Unique Name	prot_S-dermatodea_contig93005.17357.1
Type	polypeptide
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length	189

Homology

[Close]

BLAST of mRNA_S-dermatodea_contig93005.17357.1 vs. uniprot
Match: A0A0H5BNA0_9PHAE (Photosystem II CP43 apoprotein (Fragment) n=1 Tax=Zonaria diesingiana TaxID=157012 RepID=A0A0H5BNA0_9PHAE)

HSP 1 Score: 370 bits (950), Expect = 8.800e-129
Identity = 171/189 (90.48%), Postives = 185/189 (97.88%), Query Frame = 0

Query:    1 TSILGIHLIFLGIGSLILVLRSISGNAISFGLYDTWAPGGGDVRYIDYPTLNPFIIFGYALKSPFGGDGWIVSVDNMEDLVGGHVWVGALCIIGGIFHIVTKPFAWARRAFVWSGEAYLSYSLAALSIMGITASIFVWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLM 189
            TSILGIHLIFLG+GSL+ V R++SGN +SFGLYDTWAPGGGD+RYID PT+NPFIIFGYALKSPFGGDGWIVS+DN+EDLVGGH+WVGALC+IGGIFHIVTKPF+WARRAFVWSGEAYLSYSLAALSIMG+TASIFVWYNNTAYPSEF+GPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLM
Sbjct:   20 TSILGIHLIFLGLGSLLFVARAMSGNLLSFGLYDTWAPGGGDIRYIDNPTINPFIIFGYALKSPFGGDGWIVSIDNLEDLVGGHIWVGALCVIGGIFHIVTKPFSWARRAFVWSGEAYLSYSLAALSIMGLTASIFVWYNNTAYPSEFFGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLM 208

[Close]

BLAST of mRNA_S-dermatodea_contig93005.17357.1 vs. uniprot
Match: E0WD42_9PHAE (Photosystem II CP43 reaction center protein (Fragment) n=8 Tax=Phaeophyceae TaxID=2870 RepID=E0WD42_9PHAE)

HSP 1 Score: 357 bits (917), Expect = 3.410e-122
Identity = 164/189 (86.77%), Postives = 179/189 (94.71%), Query Frame = 0

Query:    1 TSILGIHLIFLGIGSLILVLRSISGNAISFGLYDTWAPGGGDVRYIDYPTLNPFIIFGYALKSPFGGDGWIVSVDNMEDLVGGHVWVGALCIIGGIFHIVTKPFAWARRAFVWSGEAYLSYSLAALSIMGITASIFVWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLM 189
            TSILGIHLIFLG+GS  L  R +SGN +S+G+YDTWAPGGGDVR++D PTLNPF+IFGYALKSPFGGDGWIVS+DNMEDLVGGH+WV  LCI GGIFHI+TKPF+WARRAFVWSGEAYLSYSLAALS+MG+TASIFVWYNNTAYPSEF+GPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLM
Sbjct:   38 TSILGIHLIFLGLGSYALAARCMSGNLLSYGVYDTWAPGGGDVRFVDNPTLNPFVIFGYALKSPFGGDGWIVSIDNMEDLVGGHLWVAGLCIFGGIFHIITKPFSWARRAFVWSGEAYLSYSLAALSLMGVTASIFVWYNNTAYPSEFFGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLM 226

[Close]

BLAST of mRNA_S-dermatodea_contig93005.17357.1 vs. uniprot
Match: A0A0U4VFJ7_9PHAE (Photosystem II CP43 reaction center protein (Fragment) n=8 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U4VFJ7_9PHAE)

HSP 1 Score: 357 bits (917), Expect = 5.640e-122
Identity = 165/189 (87.30%), Postives = 178/189 (94.18%), Query Frame = 0

Query:    1 TSILGIHLIFLGIGSLILVLRSISGNAISFGLYDTWAPGGGDVRYIDYPTLNPFIIFGYALKSPFGGDGWIVSVDNMEDLVGGHVWVGALCIIGGIFHIVTKPFAWARRAFVWSGEAYLSYSLAALSIMGITASIFVWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLM 189
            TSILGIHLIFLG+G+L+   R++ GN +S+GLYDTWAPGGGDVR+I  PTLNPFIIFGY  KSPFGGDGWI S+DNMEDLVGGH+WVG LC++GGIFHIVTKPFAWARRAFVWSGEAYLSYSLAALSIMGITASIFVWYNNTAYPSEF+GPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLM
Sbjct:  137 TSILGIHLIFLGLGALLFAYRAMPGNLVSYGLYDTWAPGGGDVRFIANPTLNPFIIFGYVFKSPFGGDGWITSIDNMEDLVGGHIWVGVLCVLGGIFHIVTKPFAWARRAFVWSGEAYLSYSLAALSIMGITASIFVWYNNTAYPSEFFGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLM 325

[Close]

BLAST of mRNA_S-dermatodea_contig93005.17357.1 vs. uniprot
Match: A0A0U5A373_9PHAE (Photosystem II CP43 reaction center protein (Fragment) n=10 Tax=PX clade TaxID=569578 RepID=A0A0U5A373_9PHAE)

HSP 1 Score: 358 bits (920), Expect = 2.390e-121
Identity = 163/189 (86.24%), Postives = 179/189 (94.71%), Query Frame = 0

Query:    1 TSILGIHLIFLGIGSLILVLRSISGNAISFGLYDTWAPGGGDVRYIDYPTLNPFIIFGYALKSPFGGDGWIVSVDNMEDLVGGHVWVGALCIIGGIFHIVTKPFAWARRAFVWSGEAYLSYSLAALSIMGITASIFVWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLM 189
            TSILGIHLIFLG+G+L+   RS+ GN  S+G+YDTWAPGGGDVR+ID PT+NPFIIFGY  KSPFGGDGWI S+DNMEDLVGGH+WVGALC++GGIFHIVTKPFAWARRAFVWSGEAYLSYSLAALS+MG+TASIFVWYNNTAYPSEF+GPTGPEASQAQAFTFLVRDQRLGAN+ASAQGPTGLGKYLM
Sbjct:  137 TSILGIHLIFLGLGALLFAFRSMPGNLFSYGVYDTWAPGGGDVRFIDNPTINPFIIFGYVFKSPFGGDGWIASIDNMEDLVGGHIWVGALCVLGGIFHIVTKPFAWARRAFVWSGEAYLSYSLAALSLMGLTASIFVWYNNTAYPSEFFGPTGPEASQAQAFTFLVRDQRLGANIASAQGPTGLGKYLM 325

[Close]

BLAST of mRNA_S-dermatodea_contig93005.17357.1 vs. uniprot
Match: D1J6Z5_ECTSI (Photosystem II CP43 reaction center protein n=125 Tax=Phaeophyceae TaxID=2870 RepID=D1J6Z5_ECTSI)

HSP 1 Score: 358 bits (918), Expect = 1.650e-120
Identity = 162/189 (85.71%), Postives = 179/189 (94.71%), Query Frame = 0

Query:    1 TSILGIHLIFLGIGSLILVLRSISGNAISFGLYDTWAPGGGDVRYIDYPTLNPFIIFGYALKSPFGGDGWIVSVDNMEDLVGGHVWVGALCIIGGIFHIVTKPFAWARRAFVWSGEAYLSYSLAALSIMGITASIFVWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLM 189
            TSILGIHLIFLG+G+L+   R++ GN  S+GLYDTWAPGGGDVR+ID PT+NPF+IFGY  KSPFGGDGWI S+DNMEDLVGGH+WVGALC+IGGIFHIVTKPF+WARRAFVWSGEAYLSYSLAALS+MG+TASIFVWYNNTAYPSEF+GPTGPEASQAQAFTFLVRDQRLGAN+ASAQGPTGLGKYLM
Sbjct:  155 TSILGIHLIFLGLGALLFAFRAMPGNLFSYGLYDTWAPGGGDVRFIDNPTINPFVIFGYVFKSPFGGDGWIASIDNMEDLVGGHIWVGALCVIGGIFHIVTKPFSWARRAFVWSGEAYLSYSLAALSLMGLTASIFVWYNNTAYPSEFFGPTGPEASQAQAFTFLVRDQRLGANIASAQGPTGLGKYLM 343

[Close]

BLAST of mRNA_S-dermatodea_contig93005.17357.1 vs. uniprot
Match: A0A7T7DA23_9PHAE (PsbC (Fragment) n=1 Tax=Sphacella subtilissima TaxID=116070 RepID=A0A7T7DA23_9PHAE)

HSP 1 Score: 352 bits (902), Expect = 5.130e-120
Identity = 164/189 (86.77%), Postives = 173/189 (91.53%), Query Frame = 0

Query:    1 TSILGIHLIFLGIGSLILVLRSISGNAISFGLYDTWAPGGGDVRYIDYPTLNPFIIFGYALKSPFGGDGWIVSVDNMEDLVGGHVWVGALCIIGGIFHIVTKPFAWARRAFVWSGEAYLSYSLAALSIMGITASIFVWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLM 189
            TSILGIHL+FL  GS   V+R+I GN  S+GLYDTWAPGGGDVRYI  PTLNPF IF YALKSPFGGDGWIVS+DNMEDLVGGH+WV ALC  GGIFHIVTKPF WARRAFVWSGEAYLSYSLAALSIMG+TAS+FVWYNNTAYPSEF+GPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLM
Sbjct:  112 TSILGIHLLFLAFGSFFFVIRAIPGNGFSYGLYDTWAPGGGDVRYIANPTLNPFTIFSYALKSPFGGDGWIVSIDNMEDLVGGHIWVAALCFFGGIFHIVTKPFRWARRAFVWSGEAYLSYSLAALSIMGVTASLFVWYNNTAYPSEFFGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLM 300

[Close]

BLAST of mRNA_S-dermatodea_contig93005.17357.1 vs. uniprot
Match: E0WD21_9PHAE (Photosystem II CP43 reaction center protein (Fragment) n=3 Tax=Phaeophyceae TaxID=2870 RepID=E0WD21_9PHAE)

HSP 1 Score: 354 bits (908), Expect = 1.340e-119
Identity = 166/189 (87.83%), Postives = 177/189 (93.65%), Query Frame = 0

Query:    1 TSILGIHLIFLGIGSLILVLRSISGNAISFGLYDTWAPGGGDVRYIDYPTLNPFIIFGYALKSPFGGDGWIVSVDNMEDLVGGHVWVGALCIIGGIFHIVTKPFAWARRAFVWSGEAYLSYSLAALSIMGITASIFVWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLM 189
            TSILGIHLIFLG+ SL  V+RS+SGN +S+GLYDTWAPGGGDVR+ID PT+NPFIIFGYALKSPFGGDGWIVS+DNMEDLVGGH+WVG LCI GGIFHIVTKPFAWARRAFVWSGEAYLSYSLAALS+MGITASIFVWYNNTAYPSEF+GP GPEA QAQAFTFLVRDQRLGA VA AQG TGLGKYLM
Sbjct:  127 TSILGIHLIFLGLXSLXFVIRSMSGNLLSYGLYDTWAPGGGDVRFIDNPTINPFIIFGYALKSPFGGDGWIVSIDNMEDLVGGHIWVGGLCIFGGIFHIVTKPFAWARRAFVWSGEAYLSYSLAALSLMGITASIFVWYNNTAYPSEFFGPXGPEAXQAQAFTFLVRDQRLGAXVAXAQGXTGLGKYLM 315

[Close]

BLAST of mRNA_S-dermatodea_contig93005.17357.1 vs. uniprot
Match: E0WD38_9PHAE (Photosystem II CP43 reaction center protein (Fragment) n=5 Tax=Sphacelariales TaxID=27945 RepID=E0WD38_9PHAE)

HSP 1 Score: 349 bits (896), Expect = 1.620e-117
Identity = 163/189 (86.24%), Postives = 174/189 (92.06%), Query Frame = 0

Query:    1 TSILGIHLIFLGIGSLILVLRSISGNAISFGLYDTWAPGGGDVRYIDYPTLNPFIIFGYALKSPFGGDGWIVSVDNMEDLVGGHVWVGALCIIGGIFHIVTKPFAWARRAFVWSGEAYLSYSLAALSIMGITASIFVWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLM 189
            TSILGIHL+FL  GS + VLR + GN  S+G+YDTWAPGGGDVRYI  PTLNP IIF YALKSPFGGDGWIVS+DNMEDLVGGH+WV ALC IGGIFHIVTKPF WAR+AFVWSGEAYLSYSLAALS+MGITASIFVWYNNTAYPSEF+GPTGPEASQAQAFTFLVRDQRLGAN+ASAQGPTGLGKYLM
Sbjct:  136 TSILGIHLLFLAFGSFLFVLRCMPGNGFSYGVYDTWAPGGGDVRYIANPTLNPAIIFSYALKSPFGGDGWIVSIDNMEDLVGGHIWVAALCFIGGIFHIVTKPFRWARKAFVWSGEAYLSYSLAALSLMGITASIFVWYNNTAYPSEFFGPTGPEASQAQAFTFLVRDQRLGANIASAQGPTGLGKYLM 324

[Close]

BLAST of mRNA_S-dermatodea_contig93005.17357.1 vs. uniprot
Match: A0A6B7GN44_9STRA (Photosystem II thylakoid membrane protein (Fragment) n=3 Tax=Phaeothamniaceae TaxID=77031 RepID=A0A6B7GN44_9STRA)

HSP 1 Score: 333 bits (855), Expect = 2.360e-113
Identity = 153/189 (80.95%), Postives = 174/189 (92.06%), Query Frame = 0

Query:    1 TSILGIHLIFLGIGSLILVLRSISGNAISFGLYDTWAPGGGDVRYIDYPTLNPFIIFGYALKSPFGGDGWIVSVDNMEDLVGGHVWVGALCIIGGIFHIVTKPFAWARRAFVWSGEAYLSYSLAALSIMGITASIFVWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLM 189
            T+ILGIHLI LGIGS +LV++++       GLYDTWAPGGGDVR I  PTLNP +IFGY LKSPFGGDGWIVS+DNMEDLVGGH+WVG +C++GGI+HI+TKPF+WARRAFVWSGEAYLSYSLAAL++MG+TAS+FVWYNNTAYPSEF+GPTGPEASQAQAFTFLVRDQRLGAN+ASAQGPTGLGKYLM
Sbjct:  102 TTILGIHLILLGIGSFLLVIKAMFVG----GLYDTWAPGGGDVRLISSPTLNPLVIFGYVLKSPFGGDGWIVSIDNMEDLVGGHIWVGIICVVGGIWHILTKPFSWARRAFVWSGEAYLSYSLAALAVMGLTASVFVWYNNTAYPSEFFGPTGPEASQAQAFTFLVRDQRLGANIASAQGPTGLGKYLM 286

[Close]

BLAST of mRNA_S-dermatodea_contig93005.17357.1 vs. uniprot
Match: A8CCT1_9STRA (Photosystem II 44 kDa reaction center protein (Fragment) n=15 Tax=Eukaryota TaxID=2759 RepID=A8CCT1_9STRA)

HSP 1 Score: 329 bits (843), Expect = 7.810e-111
Identity = 150/189 (79.37%), Postives = 173/189 (91.53%), Query Frame = 0

Query:    1 TSILGIHLIFLGIGSLILVLRSISGNAISFGLYDTWAPGGGDVRYIDYPTLNPFIIFGYALKSPFGGDGWIVSVDNMEDLVGGHVWVGALCIIGGIFHIVTKPFAWARRAFVWSGEAYLSYSLAALSIMGITASIFVWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLM 189
            T+ILGIHL+ LGIGS +LV++++       G+YDTWAPGGGDVR +  PTLNP +IFGY LKSPFGGDGWI+S++NMEDLVGGH+W+G LC +GG++HI+TKPFAWARRAFVWSGEAYLSYSLAALS+MG++AS+FVWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLM
Sbjct:  117 TTILGIHLVLLGIGSFLLVIKAMFVG----GVYDTWAPGGGDVRLVTSPTLNPLVIFGYVLKSPFGGDGWIMSINNMEDLVGGHIWMGILCTVGGVWHIITKPFAWARRAFVWSGEAYLSYSLAALSLMGLSASVFVWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLM 301

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig93005.17357.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig93005.17357.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0H5BNA0_9PHAE	8.800e-129	90.48	Photosystem II CP43 apoprotein (Fragment) n=1 Tax=...	[more]
E0WD42_9PHAE	3.410e-122	86.77	Photosystem II CP43 reaction center protein (Fragm...	[more]
A0A0U4VFJ7_9PHAE	5.640e-122	87.30	Photosystem II CP43 reaction center protein (Fragm...	[more]
A0A0U5A373_9PHAE	2.390e-121	86.24	Photosystem II CP43 reaction center protein (Fragm...	[more]
D1J6Z5_ECTSI	1.650e-120	85.71	Photosystem II CP43 reaction center protein n=125 ...	[more]
A0A7T7DA23_9PHAE	5.130e-120	86.77	PsbC (Fragment) n=1 Tax=Sphacella subtilissima Tax...	[more]
E0WD21_9PHAE	1.340e-119	87.83	Photosystem II CP43 reaction center protein (Fragm...	[more]
E0WD38_9PHAE	1.620e-117	86.24	Photosystem II CP43 reaction center protein (Fragm...	[more]
A0A6B7GN44_9STRA	2.360e-113	80.95	Photosystem II thylakoid membrane protein (Fragmen...	[more]
A8CCT1_9STRA	7.810e-111	79.37	Photosystem II 44 kDa reaction center protein (Fra...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 1..188 e-value: 3.2E-47 score: 161.4
IPR000932	Photosystem antenna protein-like	PANTHER	PTHR33180	FAMILY NOT NAMED	coord: 1..189
None	No IPR available	GENE3D	1.10.10.670		coord: 151..189 e-value: 1.1E-18 score: 68.9
None	No IPR available	PANTHER	PTHR33180:SF6		coord: 1..189
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 85..106
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 140..189
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..33
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 107..117
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 118..139
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 66..84
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 34..44
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 45..65
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	TMHMM	TMhelix		coord: 117..139
None	No IPR available	TMHMM	TMhelix		coord: 82..104
None	No IPR available	TMHMM	TMhelix		coord: 3..25
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	161077	Photosystem II antenna protein-like	coord: 1..189

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig93005	contig	S-dermatodea_contig93005:2..568 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig93005.17357.1	mRNA_S-dermatodea_contig93005.17357.1	Saccorhiza dermatodea SderLu1190fm monoicous	mRNA	S-dermatodea_contig93005 2..568 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-dermatodea_contig93005.17357.1 ID=prot_S-dermatodea_contig93005.17357.1|Name=mRNA_S-dermatodea_contig93005.17357.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=189bp
TSILGIHLIFLGIGSLILVLRSISGNAISFGLYDTWAPGGGDVRYIDYPT
LNPFIIFGYALKSPFGGDGWIVSVDNMEDLVGGHVWVGALCIIGGIFHIV
TKPFAWARRAFVWSGEAYLSYSLAALSIMGITASIFVWYNNTAYPSEFYG
PTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLM

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000932	PS_antenna-like
IPR036001	PS_II_antenna-like_sf