prot_S-dermatodea_contig92775.17340.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig92775.17340.1
Unique Nameprot_S-dermatodea_contig92775.17340.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length65
Homology
BLAST of mRNA_S-dermatodea_contig92775.17340.1 vs. uniprot
Match: A0A6H5JPH2_9PHAE (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPH2_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 8.880e-36
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = 0
Query:    1 VHGGTGEDDPGPGGRRSVRQALPYMLTPTKSDDRPLHRPLHCHRLDKPTGGLLICAKTRPALSAI 65
            VHGGTGEDDPGPGGRRSVRQALPYMLTPTKS DRPLHRPLHCHRLDK TGGLLICAKTRPALSAI
Sbjct:  181 VHGGTGEDDPGPGGRRSVRQALPYMLTPTKSKDRPLHRPLHCHRLDKATGGLLICAKTRPALSAI 245          
BLAST of mRNA_S-dermatodea_contig92775.17340.1 vs. uniprot
Match: A0A7S2RLL2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLL2_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 6.820e-10
Identity = 33/64 (51.56%), Postives = 39/64 (60.94%), Query Frame = 0
Query:    1 VHGGTGEDDPGPGGR--RSVRQALPYMLTPTKSDDRPLHRPLHCHRLDKPTGGLLICAKTRPAL 62
             HG  G +D G       S++ A+ Y L PT S D PL RP HCHRLD  T GL++ AKTRPAL
Sbjct:   59 THGNRGGEDAGATASLGASLKTAILYSLQPTPSTDEPLRRPEHCHRLDAATFGLVLVAKTRPAL 122          
BLAST of mRNA_S-dermatodea_contig92775.17340.1 vs. uniprot
Match: A0A836CLS8_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLS8_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.140e-9
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 0
Query:   17 SVRQALPYMLTPTKSDDRPLHRPLHCHRLDKPTGGLLICAKTRPAL 62
            S+R A+ + L P+ + D  L RP H HRLD PTGGL++CAKTRPAL
Sbjct:  151 SLRTAIAHCLKPSAATDAVLRRPQHAHRLDGPTGGLMVCAKTRPAL 196          
BLAST of mRNA_S-dermatodea_contig92775.17340.1 vs. uniprot
Match: A0A7S4C3Z6_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C3Z6_CHRCT)

HSP 1 Score: 58.5 bits (140), Expect = 1.900e-8
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0
Query:   14 GRRSVRQALPYMLTPTKSDDRPLHRPLHCHRLDKPTGGLLICAKTRPALSAI 65
            GR +VR  L Y L P+++ + PL RP H HRLD PT GLL+ AK+RPA+SA+
Sbjct:  165 GRLNVRTMLAYSLQPSQNAE-PLWRPQHVHRLDAPTSGLLVVAKSRPAISAL 215          
BLAST of mRNA_S-dermatodea_contig92775.17340.1 vs. uniprot
Match: A0A0M0KBI6_9EUKA (Ribosomal large subunit pseudouridine synthase d (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0KBI6_9EUKA)

HSP 1 Score: 58.5 bits (140), Expect = 1.960e-8
Identity = 33/60 (55.00%), Postives = 40/60 (66.67%), Query Frame = 0
Query:   10 PGPGGR---RSVRQALPYMLT-PTKSDDRPLHRPLHCHRLDKPTGGLLICAKTRPALSAI 65
            P PGG    +S+R A+ Y LT P       L+RP  CHRLDKPT GLL+CAKT+PAL A+
Sbjct:  122 PPPGGATGSQSMRTAIQYALTAPPIGMPGALYRPHLCHRLDKPTSGLLVCAKTKPALLAL 181          
BLAST of mRNA_S-dermatodea_contig92775.17340.1 vs. uniprot
Match: A0A7S2LN91_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LN91_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.270e-7
Identity = 30/52 (57.69%), Postives = 35/52 (67.31%), Query Frame = 0
Query:   15 RRSVRQALPYMLTPTKSDDRP-LHRPLHCHRLDKPTGGLLICAKTRPALSAI 65
            RR++  ALP+ L P KS  +  L  P  CHRLD PT GLL+ AKTRPAL AI
Sbjct:   83 RRTIECALPFALKPPKSGTKGRLLYPHPCHRLDMPTSGLLLVAKTRPALVAI 134          
BLAST of mRNA_S-dermatodea_contig92775.17340.1 vs. uniprot
Match: I0YKT8_COCSC (PseudoU_synth_2 domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YKT8_COCSC)

HSP 1 Score: 55.5 bits (132), Expect = 2.400e-7
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 0
Query:   11 GPGGRRSVRQALPYMLTPTKSDDRPLHRPLHCHRLDKPTGGLLICAKTRPALSAI 65
            G GG + V  +L Y+LTP+ S    L RP H HRLD PTGGLL+ AKTRPA+ ++
Sbjct:  146 GMGGVKDVVGSLGYLLTPS-SKVGSLWRPQHVHRLDAPTGGLLMVAKTRPAIKSL 199          
BLAST of mRNA_S-dermatodea_contig92775.17340.1 vs. uniprot
Match: A0A7S4AA39_9STRA (Hypothetical protein n=3 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AA39_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.420e-7
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 0
Query:   14 GRRSVRQALPYMLTPTKSDDRPLH-RPLHCHRLDKPTGGLLICAKTRPAL 62
            G R++R ALP++L P K     ++ RP   HRLDKPT GLLI AKTRPA+
Sbjct:  347 GGRNIRNALPFVLKPPKRGTFDIYLRPAGVHRLDKPTSGLLIVAKTRPAM 396          
BLAST of mRNA_S-dermatodea_contig92775.17340.1 vs. uniprot
Match: A0A7S2LP40_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LP40_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 3.140e-7
Identity = 30/52 (57.69%), Postives = 35/52 (67.31%), Query Frame = 0
Query:   15 RRSVRQALPYMLTPTKSDDRP-LHRPLHCHRLDKPTGGLLICAKTRPALSAI 65
            RR++  ALP+ L P KS  +  L  P  CHRLD PT GLL+ AKTRPAL AI
Sbjct:   83 RRTIECALPFALKPPKSGTKGRLLYPHPCHRLDMPTSGLLLVAKTRPALVAI 134          
BLAST of mRNA_S-dermatodea_contig92775.17340.1 vs. uniprot
Match: A0A7S3UCU8_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UCU8_9CHLO)

HSP 1 Score: 54.7 bits (130), Expect = 4.150e-7
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 0
Query:   14 GRRSVRQALPYMLTPTKSDDRPLHRPLHCHRLDKPTGGLLICAKTRPAL 62
            G+ +++Q LPY+L P       LHRP H HRLD PTGGLLI AKT+ ++
Sbjct:  123 GKTTLQQLLPYLLQPAHVQGA-LHRPHHVHRLDMPTGGLLIAAKTQASI 170          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig92775.17340.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPH2_9PHAE8.880e-3696.92PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A7S2RLL2_9STRA6.820e-1051.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836CLS8_9STRA2.140e-958.70Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
A0A7S4C3Z6_CHRCT1.900e-855.77Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A0M0KBI6_9EUKA1.960e-855.00Ribosomal large subunit pseudouridine synthase d (... [more]
A0A7S2LN91_9STRA2.270e-757.69Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
I0YKT8_COCSC2.400e-754.55PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A7S4AA39_9STRA2.420e-756.00Hypothetical protein n=3 Tax=Pseudo-nitzschia aust... [more]
A0A7S2LP40_9STRA3.140e-757.69Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S3UCU8_9CHLO4.150e-753.06Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.2350.10coord: 1..65
e-value: 1.9E-6
score: 29.5
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 14..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig92775contigS-dermatodea_contig92775:172..366 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig92775.17340.1mRNA_S-dermatodea_contig92775.17340.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig92775 172..366 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig92775.17340.1 ID=prot_S-dermatodea_contig92775.17340.1|Name=mRNA_S-dermatodea_contig92775.17340.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=65bp
VHGGTGEDDPGPGGRRSVRQALPYMLTPTKSDDRPLHRPLHCHRLDKPTG
GLLICAKTRPALSAI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom_sf