prot_S-dermatodea_contig9276.17337.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig9276.17337.1
Unique Nameprot_S-dermatodea_contig9276.17337.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length234
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig9276.17337.1 vs. uniprot
Match: D7FSX8_ECTSI (Ubiquitin carboxyl-terminal hydrolase 64E n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSX8_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 7.740e-35
Identity = 106/223 (47.53%), Postives = 133/223 (59.64%), Query Frame = 0 
Query:   25 LFQDRLVEEAGIVHADEVYLEEGRVPRPRELEIAVLVYAPHFLGLAAAAATAKGAAAAARLANTDGKSTATDGTADDGARTRCGAGGRSERS--AEGSXXXXXXKERRAKRAGEGVTG------------------SVPTGLSVSAVWPDEEADKKRAEAEKVKVDPGKLLGVQRLMFMRTLGKIYIDDRKSVTELRRILVDLLSEGLSKGHKAWTEAALKAA 227
            LFQDRLVEE+GI+   E+YLE+GRVPRPRELEI VL YAPHFLGLAAAAA  +  A  +++      S  +D  AD            ++ +  A G+XXXXXX                                SVPTGLS SAVWPDEEA +K+ + E+ + DP +LL +QR + MRTLG  +ID+R+S+TELR IL  LLSEGLSK  KA    A++AA
Sbjct: 1530 LFQDRLVEESGILGGQEIYLEDGRVPRPRELEITVLAYAPHFLGLAAAAAAERLKAKVSQI------SEISDAAADXXXXXXXXXXKAADPADPARGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVPTGLSPSAVWPDEEAARKKGDVERFRGDPVRLLSLQRQLSMRTLGHFHIDERRSLTELRAILRGLLSEGLSKATKASMAEAMRAA 1746
[Close]
BLAST of mRNA_S-dermatodea_contig9276.17337.1 vs. uniprot
Match: A0A6H5JDC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDC1_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.560e-33
Identity = 110/238 (46.22%), Postives = 132/238 (55.46%), Query Frame = 0 
Query:   25 LFQDRLVEEAGIVHADEVYLEEGRVPRPRELEIAVLVYAPHFLGLAAAAATAK------------GAAAAARLANTDGKSTATDGTADD--GARTRCGAGGRSERSAEGSXXXXXXKERRAKRAGEGVTGSVPTGLSVSAVWPDEEADKKRAEAEKVKVDPGK---------------------LLGVQRLMFMRTLGKIYIDDRKSVTELRRILVDLLSEGLSKGHKAWTEAALKAA 227
            LFQDRLVEE+GI+   E+YLE+GRVPRPRELEI VL YAPHFLGLAAAAA  +             AAA A + N +G   A D  AD   G                  XXXXXX      +      G VPTGLS SAVWPDEEA +K+ + E+ + DP +                     LL +QR + MRTLG  +ID+R+S+TELR IL  LLSEGLSK  KA    A++AA
Sbjct:  264 LFQDRLVEESGILGGQEIYLEDGRVPRPRELEITVLAYAPHFLGLAAAAAAERLKAKVSQISEISDAAADANVGNGNGDGKAAD-PADPARGNAAXXXXXXXXXXXXXXXXXXXXXXXXXXXKXXXXKVGLVPTGLSPSAVWPDEEAARKKGDVERFRGDPVRVGVFFSGGETTQQGYISRQIRLLSLQRQLSMRTLGHFHIDERRSLTELRAILRGLLSEGLSKAMKASMAEAIRAA 500
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9276.17337.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSX8_ECTSI7.740e-3547.53Ubiquitin carboxyl-terminal hydrolase 64E n=1 Tax=... [more]
A0A6H5JDC1_9PHAE1.560e-3346.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9276contigS-dermatodea_contig9276:2113..8295 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9276.17337.1mRNA_S-dermatodea_contig9276.17337.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig9276 2108..8295 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig9276.17337.1 ID=prot_S-dermatodea_contig9276.17337.1|Name=mRNA_S-dermatodea_contig9276.17337.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=234bp
MGGVAAADEDMSLMLGLGAADTEALFQDRLVEEAGIVHADEVYLEEGRVP
RPRELEIAVLVYAPHFLGLAAAAATAKGAAAAARLANTDGKSTATDGTAD
DGARTRCGAGGRSERSAEGSAEGSSRKERRAKRAGEGVTGSVPTGLSVSA
VWPDEEADKKRAEAEKVKVDPGKLLGVQRLMFMRTLGKIYIDDRKSVTEL
RRILVDLLSEGLSKGHKAWTEAALKAAAAQAAAD
back to top