prot_S-dermatodea_contig92747.17333.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig92747.17333.1
Unique Nameprot_S-dermatodea_contig92747.17333.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length66
Homology
BLAST of mRNA_S-dermatodea_contig92747.17333.1 vs. uniprot
Match: D8LQB4_ECTSI (3\'-5\' exonuclease family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB4_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 3.540e-10
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 0
Query:    3 RLCCSYLGKMLSKRQQQSPWARRPLKDAQVDYAACDVLGVLCVRPALIWRIERID 57
            +L   YLG+ LSKRQQ S WARRPL+ AQV+YAACD L  L V  AL+  +  +D
Sbjct:  124 KLASMYLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRVFDALLLALGSLD 178          
BLAST of mRNA_S-dermatodea_contig92747.17333.1 vs. uniprot
Match: A0A6H5JNJ5_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ5_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.060e-9
Identity = 31/56 (55.36%), Postives = 38/56 (67.86%), Query Frame = 0
Query:    2 GRLCCSYLGKMLSKRQQQSPWARRPLKDAQVDYAACDVLGVLCVRPALIWRIERID 57
            G+    YLG+ LSKRQQ S WARRPL+ AQV+YAACD L  L V  AL+  +  +D
Sbjct:  193 GQRDVQYLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRVFDALLLAMGSVD 248          
BLAST of mRNA_S-dermatodea_contig92747.17333.1 vs. uniprot
Match: A0A2G1QUC7_9HYPH (Ribonuclease D n=2 Tax=Phyllobacteriaceae TaxID=69277 RepID=A0A2G1QUC7_9HYPH)

HSP 1 Score: 49.7 bits (117), Expect = 1.800e-5
Identity = 26/55 (47.27%), Postives = 34/55 (61.82%), Query Frame = 0
Query:    4 LCCSYLGKMLSKRQQQSPWARRPLKDAQVDYAACDVLGVLCVRPALIWRIERIDR 58
            LC   L   +SK+QQ S WA   L  AQ++YAA DVL +  +R A+  R+ER DR
Sbjct:  120 LCSELLDVQISKQQQSSDWAAATLSQAQLEYAASDVLHLHRLRDAISARLEREDR 174          
BLAST of mRNA_S-dermatodea_contig92747.17333.1 vs. uniprot
Match: UPI0012E11B9F (ribonuclease D n=1 Tax=Oceanobacillus sp. HTM 045 TaxID=2676312 RepID=UPI0012E11B9F)

HSP 1 Score: 49.3 bits (116), Expect = 2.460e-5
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 0
Query:    4 LCCSYLGKMLSKRQQQSPWARRPLKDAQVDYAACDVLGVLCVRPALIWRIERIDR 58
            LC   LG  LSK+QQ S WA   L +AQ+DYAA DVL +  ++  L  R+ER  R
Sbjct:  119 LCRELLGVDLSKQQQSSDWAAEELSEAQLDYAATDVLHLHALKRELDARLEREGR 173          
BLAST of mRNA_S-dermatodea_contig92747.17333.1 vs. uniprot
Match: UPI001CBB3DDE (ribonuclease D n=1 Tax=Oricola indica TaxID=2872591 RepID=UPI001CBB3DDE)

HSP 1 Score: 49.3 bits (116), Expect = 2.570e-5
Identity = 26/56 (46.43%), Postives = 35/56 (62.50%), Query Frame = 0
Query:    4 LCCSYLGKMLSKRQQQSPWARRPLKDAQVDYAACDVLGVLCVRPALIWRIERIDRS 59
            +C   LG  LSK+QQ S WA   L DAQ++YAA DVL +  +   L  R+ER +R+
Sbjct:  124 ICRELLGVDLSKQQQSSDWAAEQLSDAQLEYAASDVLHLHALMAVLEERLERENRT 179          
BLAST of mRNA_S-dermatodea_contig92747.17333.1 vs. uniprot
Match: A0A1X4P183_9RHOB (3'-5' exonuclease n=2 Tax=Marivita TaxID=659428 RepID=A0A1X4P183_9RHOB)

HSP 1 Score: 48.9 bits (115), Expect = 3.440e-5
Identity = 26/52 (50.00%), Postives = 34/52 (65.38%), Query Frame = 0
Query:    8 YLGKMLSKRQQQSPWARRPLKDAQVDYAACDVLGVLCVRPALIWRIERIDRS 59
            +LG  +SK+QQ S W    L  AQVDYAA DVL +  +R AL+  +ER DR+
Sbjct:  123 HLGIDISKQQQSSDWGSETLSQAQVDYAASDVLYLHKLRDALLAMLEREDRA 174          
BLAST of mRNA_S-dermatodea_contig92747.17333.1 vs. uniprot
Match: A0A368A645_9HYPH (Ribonuclease D n=1 Tax=Candidatus Tokpelaia sp. JSC189 TaxID=2079010 RepID=A0A368A645_9HYPH)

HSP 1 Score: 48.9 bits (115), Expect = 3.490e-5
Identity = 26/56 (46.43%), Postives = 36/56 (64.29%), Query Frame = 0
Query:    4 LCCSYLGKMLSKRQQQSPWARRPLKDAQVDYAACDVLGVLCVRPALIWRIERIDRS 59
            LC  +LG +LSK+QQ S W    L +AQV+YAA DVL +  ++  L  R+ER  R+
Sbjct:  121 LCNEFLGVLLSKQQQSSDWGSDTLTEAQVEYAASDVLYLHQLKKILEIRLEREGRT 176          
BLAST of mRNA_S-dermatodea_contig92747.17333.1 vs. uniprot
Match: A0A1Q9AUM0_9HYPH (3'-5' exonuclease n=1 Tax=Rhizobium oryzae TaxID=464029 RepID=A0A1Q9AUM0_9HYPH)

HSP 1 Score: 48.9 bits (115), Expect = 3.540e-5
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 0
Query:   13 LSKRQQQSPWARRPLKDAQVDYAACDVLGVLCVRPALIWRIERIDRSINY 62
            +SK+QQ S WA   L  AQ+DYAA DVL +  +R  LI+R+ER D  I+Y
Sbjct:  132 ISKQQQSSDWAAAQLSQAQLDYAASDVLYLHALRDKLIFRLER-DGRIDY 180          
BLAST of mRNA_S-dermatodea_contig92747.17333.1 vs. uniprot
Match: UPI00082DB7D9 (ribonuclease H-like domain-containing protein n=1 Tax=Pseudovibrio hongkongensis TaxID=1647556 RepID=UPI00082DB7D9)

HSP 1 Score: 48.1 bits (113), Expect = 6.720e-5
Identity = 26/55 (47.27%), Postives = 33/55 (60.00%), Query Frame = 0
Query:    4 LCCSYLGKMLSKRQQQSPWARRPLKDAQVDYAACDVLGVLCVRPALIWRIERIDR 58
            +C   L   LSK+QQ S WA   L DAQ+ YAA DVL +  +R  L + +ER DR
Sbjct:  121 ICRELLSVDLSKQQQSSDWAADKLSDAQLAYAASDVLHLHALRDKLTFMLEREDR 175          
BLAST of mRNA_S-dermatodea_contig92747.17333.1 vs. uniprot
Match: A0A4R0PEM0_9HYPH (Ribonuclease D n=1 Tax=Oricola cellulosilytica TaxID=1429082 RepID=A0A4R0PEM0_9HYPH)

HSP 1 Score: 48.1 bits (113), Expect = 6.860e-5
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 0
Query:    9 LGKMLSKRQQQSPWARRPLKDAQVDYAACDVLGVLCVRPALIWRIERIDRS 59
            +G  LSK+QQ S WA   L DAQ++YAA DVL +  +  AL+ R+ER  R+
Sbjct:  129 IGIDLSKQQQSSDWAAETLTDAQLEYAASDVLHLHALMDALVARLEREGRT 179          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig92747.17333.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LQB4_ECTSI3.540e-1056.363\'-5\' exonuclease family protein n=1 Tax=Ectocar... [more]
A0A6H5JNJ5_9PHAE2.060e-955.363'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A2G1QUC7_9HYPH1.800e-547.27Ribonuclease D n=2 Tax=Phyllobacteriaceae TaxID=69... [more]
UPI0012E11B9F2.460e-549.09ribonuclease D n=1 Tax=Oceanobacillus sp. HTM 045 ... [more]
UPI001CBB3DDE2.570e-546.43ribonuclease D n=1 Tax=Oricola indica TaxID=287259... [more]
A0A1X4P183_9RHOB3.440e-550.003'-5' exonuclease n=2 Tax=Marivita TaxID=659428 Re... [more]
A0A368A645_9HYPH3.490e-546.43Ribonuclease D n=1 Tax=Candidatus Tokpelaia sp. JS... [more]
A0A1Q9AUM0_9HYPH3.540e-552.003'-5' exonuclease n=1 Tax=Rhizobium oryzae TaxID=4... [more]
UPI00082DB7D96.720e-547.27ribonuclease H-like domain-containing protein n=1 ... [more]
A0A4R0PEM0_9HYPH6.860e-549.02Ribonuclease D n=1 Tax=Oricola cellulosilytica Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0025623'-5' exonuclease domainPFAMPF01612DNA_pol_A_exo1coord: 2..49
e-value: 1.5E-5
score: 24.8
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..63
e-value: 5.5E-11
score: 44.2
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 3..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig92747contigS-dermatodea_contig92747:157..354 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig92747.17333.1mRNA_S-dermatodea_contig92747.17333.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig92747 157..354 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig92747.17333.1 ID=prot_S-dermatodea_contig92747.17333.1|Name=mRNA_S-dermatodea_contig92747.17333.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=66bp
MGRLCCSYLGKMLSKRQQQSPWARRPLKDAQVDYAACDVLGVLCVRPALI
WRIERIDRSINYTTVS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0025623'-5'_exonuclease_dom
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf