prot_S-dermatodea_contig923.17293.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig923.17293.1
Unique Nameprot_S-dermatodea_contig923.17293.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length446
Homology
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BLAST of mRNA_S-dermatodea_contig923.17293.1 vs. uniprot
Match: D8LID6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LID6_ECTSI)

HSP 1 Score: 416 bits (1068), Expect = 5.170e-139
Identity = 247/476 (51.89%), Postives = 311/476 (65.34%), Query Frame = 0 
Query:    1 MREAREDLAYDRTPMLVRGGDSAPPRLSVQGFRSLATLLHQRVRSDQLDASARPAVHAPELADQLAGAMEASKLSSESTDHRPRRARTLLSLCISQIGQDFLAYHAENHAVSQAFLLLPTTCLSRLSRAASARGTIADHNVGLLCIPGVDSLCLRGRFTDQGAGVLLPALRVADAPTGEHRSPEDAVDLAEVYRNSNA---------------EMYGEDPGDGASVLASTQPANESG--------GGTEDWESADDRVEACLHGGISLTSLDISSPLITSGFIERLVPRIPSLRRLGIRGSLDIVGGPDAVCDHVPRLLALRELDVSHCTWFCDIGLRRFAKALSRECSLSRN--RNFGYTVRGSHWMLAADQVNDGASGWGAASASTTNLEQQLQALDAGGPNRA-----SGACRGSGERGSPA---EAARFRTFTLTCARTAVTERGARVAEALSPGLLVVL--EDKGAVGGVL 441
            MR+AREDL++DR   L RGGD+APPRLS  GFRSLATLL QRVR+D++DA A PAV +  LA ++  A  ++  S++ T+ RPR+  TLLSLCI QIG+DFLAY A++ A+++AFLLLP+ CLSRLSR+ASA G +ADHN+GLLC PGV +L LRGRFTD+G G LLPAL   + P G       A +LAEVYR+  A               E       DG  ++A  QPA            G  E+WE+A DR+EA L GG+SLTSLD+SSP +T+GF++RL  RIPSLRRLG+RGS  +VGGPD VCDHVPRL ALRELD+SHCTWFCD+ LRR AK+LS   S +     N G     + ++   D+      GWGAA A +TN           GP+ +     SGA R SGE+  P+      RFRTFT+ CARTAVTE+GA+ AE +SPGL+V+L  +   A GG L
Sbjct:    1 MRDAREDLSWDRRQNLGRGGDAAPPRLSATGFRSLATLLRQRVRADEIDAVAPPAVRSENLAGKVVAA-PSNYFSADWTETRPRKTCTLLSLCIRQIGRDFLAYRADDDAIAEAFLLLPSPCLSRLSRSASAGGNVADHNIGLLCSPGVSTLWLRGRFTDEGVGALLPALNAGNRPNGGSH----AAELAEVYRDGTAADCLAGNAVDTAMGTESRVASGDDG--LVALIQPAAYHAAAGEAIVEGAEEEWETACDRIEASLRGGVSLTSLDLSSPRVTAGFVKRLTARIPSLRRLGLRGSFGVVGGPDFVCDHVPRLAALRELDLSHCTWFCDLTLRRLAKSLSLRASPAAGDPENQGPHAGSATYLQDLDEAE--TRGWGAAFAPSTN-NLAFAGHAGSGPSGSDADLVSGASRESGEKELPSLGRSLHRFRTFTVVCARTAVTEKGAKAAELMSPGLMVILVADKPAAAGGAL 466
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig923.17293.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LID6_ECTSI5.170e-13951.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 223..377
e-value: 1.1E-7
score: 33.1
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 239..318

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig923contigS-dermatodea_contig923:11287..18779 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig923.17293.1mRNA_S-dermatodea_contig923.17293.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig923 8316..18803 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig923.17293.1 ID=prot_S-dermatodea_contig923.17293.1|Name=mRNA_S-dermatodea_contig923.17293.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=446bp
MREAREDLAYDRTPMLVRGGDSAPPRLSVQGFRSLATLLHQRVRSDQLDA
SARPAVHAPELADQLAGAMEASKLSSESTDHRPRRARTLLSLCISQIGQD
FLAYHAENHAVSQAFLLLPTTCLSRLSRAASARGTIADHNVGLLCIPGVD
SLCLRGRFTDQGAGVLLPALRVADAPTGEHRSPEDAVDLAEVYRNSNAEM
YGEDPGDGASVLASTQPANESGGGTEDWESADDRVEACLHGGISLTSLDI
SSPLITSGFIERLVPRIPSLRRLGIRGSLDIVGGPDAVCDHVPRLLALRE
LDVSHCTWFCDIGLRRFAKALSRECSLSRNRNFGYTVRGSHWMLAADQVN
DGASGWGAASASTTNLEQQLQALDAGGPNRASGACRGSGERGSPAEAARF
RTFTLTCARTAVTERGARVAEALSPGLLVVLEDKGAVGGVLRPGL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf