prot_S-dermatodea_contig8776.16922.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig8776.16922.1
Unique Nameprot_S-dermatodea_contig8776.16922.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length779
Homology
BLAST of mRNA_S-dermatodea_contig8776.16922.1 vs. uniprot
Match: D8LB83_ECTSI (WD-40 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB83_ECTSI)

HSP 1 Score: 327 bits (837), Expect = 7.240e-92
Identity = 359/738 (48.64%), Postives = 394/738 (53.39%), Query Frame = 0
Query:    1 QLIIVDCDLGSVGGPGMEPLPPPVRRTLTKAIRAVLHGNLGNLDAPVRLSKPSAAPLPVMAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGKVGLGAWTDRDRGSVAVVVAARGRGAAQGGGEKSGEXXXXXXXXXXXXXXXXTVRLAAVAVM-ARRVRARGAEARMEAMLRQEFARAMAGMLYGFAECLFFLQPERPIFNGARFLQEYCEESYVPFMSVVIDTLAFKYLLETQDSAPLRPFRDMLDKARRDALKKSGDHSKHHGGAGPRGAADEPSSAVEAFDGPFPVVTGGGDETDRSRAASAXXXXXXXXXXGXXXXXXXXXXXXXXGASRLPPPAFTIAAPSLDSFVRRGSGGRGGQGSGDXXXXXXXXXDDDVDFSAVSRGKGDHDFSGTGIGGDRGSSGGDGAQELEQAAEEVRQESPP--RASAAAGGLAVPAPSTPGEEEGIGAXXXXXXXXXXXXSG-----------GRMRPISNERSSMRLSDARGGFIGGAMMGAKGRSGSGAGXXXXADGIYSSPTGAGKGVYGVEADEMADEGEDXXXXXXXXXXXXXXXXXXXXAQSKTRAPPEESDALCYDSAGDWASDGSDGLPAVLAVRKAGAGGAPLARPASWLSTEVRVTEGGEK-EESDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQSAGESAHEEDSAETFGLATLGEGAAVLPMSPGRGNDDPCPSGSISPSRAAAIAASASRKN 723
            +LIIVDCDLG V G GME LPPPVRR+LTKA+RAVLHGNLG LDAP RLSKP AA     AA  XXXXXXXXXXXXXXXXX            G VGL AWTDRDR     V +  G G  QGGGEKS E                      VAV  ARR RARGA AR+EA+LR EFARAMA MLYGF ECLFFL P+RPIFNGARFLQEYCEESYVPFMSVVIDTLAFKYLLETQD+ PLRPF D+LDKARRDAL+K GDH KH     P+   DEP +A  AFDGPFPVV G  DE   SR  S+          G              G + LPPPAF I +P L SF + G           XXXXXX   +++VD SA SRGK + D +G   GG R                          R + ++GG A               XXXXXXXXXXXX              + R    ERS +RLSDARG FIG                        S+P            DEMA EGE XXXXXXXXXXXXXXXX       + R    E   +CYDSAGDWASDGSDGLPAVLA R                       E       SDV                XXXXXXXXXXX      QSAGESA EE+   +  L T+GEG A  P S   G  D  P G I   RAAA+AA+  R+N
Sbjct:  692 ELIIVDCDLGIVDGQGMEQLPPPVRRSLTKAVRAVLHGNLGGLDAPARLSKPEAA----SAAATXXXXXXXXXXXXXXXXXAQKSGYLASGPVGAVGLSAWTDRDR--RGAVASGDGTGG-QGGGEKSAEVGGDQSMGGGRRSGGE------VAVRKARRGRARGAAARVEALLRLEFARAMADMLYGFTECLFFLHPDRPIFNGARFLQEYCEESYVPFMSVVIDTLAFKYLLETQDTPPLRPFHDLLDKARRDALRKGGDHRKHQMILAPQ-VPDEPPTAG-AFDGPFPVVHGF-DEVVVSRPKSSDAPAAAAGAAGTDAARGAARLV---GGTALPPPAFAIPSPPLRSFAQHGG----------XXXXXXRGEEEEVDLSA-SRGK-EGDGTGNRAGGSRDXXXXXXXXXXXXXXXXXXXXXXXXERHTPSSGGDATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKGRAKREERSGLRLSDARGSFIG-----------------------SSTPI----------KDEMAAEGEXXXXXXXXXXXXXXXXXASSFNYVRRRTSASEEGEVCYDSAGDWASDGSDGLPAVLANRXXXXXXXXXXXXXXXXXXXXXSEERARSLRGSDVGANSDPVQGKETLPATXXXXXXXXXXXAVVRAGQSAGESALEEEQPRSSEL-TVGEGTAPPPSS-SLGGADRRPEG-IPQGRAAALAAAFERRN 1362          
BLAST of mRNA_S-dermatodea_contig8776.16922.1 vs. uniprot
Match: A0A6H5KB05_9PHAE (UDENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB05_9PHAE)

HSP 1 Score: 302 bits (774), Expect = 1.250e-83
Identity = 199/357 (55.74%), Postives = 214/357 (59.94%), Query Frame = 0
Query:    2 LIIVDCDLGSVGGPGMEPLPPPVRRTLTKAIRAVLHGNLGNLDAPVRLSKPSAAPLPVMAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSG--GKVGLGAWTDRDR-GSVAVVVAARGRGAAQGGGEKSGEXXXXXXXXXXXXXXXXTVRLAAVAVM-ARRVRARGAEARMEAMLRQEFARAMAGMLYGFAECLFFLQPERPIFNGARFLQEYCEESYVPFMSVVIDTLAFKYLLETQDSAPLRPFRDMLDKARRDALKKSGDHSKHHGGAGPRGAADEPSSAVEAFDGPFPVVTGGGDETDRSRAASAXXXXXXXXXXGXXXXXXXXXXXXXXGASRLPPPAFTIAAPSLDSFVR 354
            LIIVDCDLG V G GME LPPPVRR+LTKA+RAVLHGNLG LDAP RLSKP AA      A                             SG  G VGL AWTDRDR G+VA    A G    QGGGEKS E                      VAV  ARR RARG  AR+EA+LR EFARAMA MLYGF ECLFFL P+RPIFNGARFLQEYCEESYVPFMSVVIDTLAFKYLLETQD+ PLRPF D+LDKARRDAL+K GDH KH     P+   DEP +A  AFDGPFPVV G  DE   SR  S+                         G + LPPPAF I +P L SF +
Sbjct:  731 LIIVDCDLGIVDGQGMEQLPPPVRRSLTKAVRAVLHGNLGGLDAPARLSKPEAA------AGAKATGSKVAKGRAPPSSSSSAQKSGSLASGPVGAVGLSAWTDRDRRGAVASGDGAVG----QGGGEKSAEVGRDQYLGGGRRSCGE------VAVRKARRGRARGVAARVEALLRLEFARAMADMLYGFTECLFFLHPDRPIFNGARFLQEYCEESYVPFMSVVIDTLAFKYLLETQDTPPLRPFHDLLDKARRDALRKGGDHRKHQMILAPQ-VPDEPPTAG-AFDGPFPVVNGF-DEAVVSRPKSSDAPTAAAAGAAGTDAATLGGEARLVGGATLPPPAFAIPSPPLSSFAQ 1068          
BLAST of mRNA_S-dermatodea_contig8776.16922.1 vs. uniprot
Match: W7TT74_9STRA (Ribosome assembly protein 4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TT74_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 9.410e-7
Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = 0
Query:  170 EAMLRQEFARAMAGMLYGFAECLFFLQPERPIFNGARFLQEYCEESYVPFMSVVIDTLAFKYLLETQDSAPLRPFRDMLDKA 251
            E  LR+ F R +A +L G+ +C+F++ P  PIFN ARFL EY       F+S ++DT +F+  LE QD   +  FR  L +A
Sbjct:  129 EEELRRLFLRCLAYLLSGYHDCVFYIDPNSPIFNRARFLAEYAPAEDHAFLSRLLDTQSFQAFLENQDGPSINLFRRTLFQA 210          
BLAST of mRNA_S-dermatodea_contig8776.16922.1 vs. uniprot
Match: A0A4D9DBD8_9STRA (UDENN domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DBD8_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.000e-6
Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = 0
Query:  170 EAMLRQEFARAMAGMLYGFAECLFFLQPERPIFNGARFLQEYCEESYVPFMSVVIDTLAFKYLLETQDSAPLRPFRDMLDKA 251
            E  LR+ F R +A +L G+ +C+F++ P  PIFN ARFL EY       F+S ++DT +F+  LE QD   +  FR  L +A
Sbjct:  751 EEELRRLFLRCLAYLLSGYHDCVFYIDPNSPIFNRARFLAEYAPAEDHAFLSRLLDTQSFQAFLENQDGPSINLFRRTLFQA 832          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8776.16922.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LB83_ECTSI7.240e-9248.64WD-40 repeat protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5KB05_9PHAE1.250e-8355.74UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
W7TT74_9STRA9.410e-741.46Ribosome assembly protein 4 n=1 Tax=Nannochloropsi... [more]
A0A4D9DBD8_9STRA1.000e-641.46UDENN domain-containing protein n=1 Tax=Nannochlor... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 215..233
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 177..195
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 196..214
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 234..779
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..176

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8776contigS-dermatodea_contig8776:165..8689 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8776.16922.1mRNA_S-dermatodea_contig8776.16922.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig8776 165..8689 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig8776.16922.1 ID=prot_S-dermatodea_contig8776.16922.1|Name=mRNA_S-dermatodea_contig8776.16922.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=779bp
QLIIVDCDLGSVGGPGMEPLPPPVRRTLTKAIRAVLHGNLGNLDAPVRLS
KPSAAPLPVMAAATTTAAAISASNTLTRQGGGGGSGGGGGASGGKVGLGA
WTDRDRGSVAVVVAARGRGAAQGGGEKSGEEGPEQQLQQQQQQQQQTVRL
AAVAVMARRVRARGAEARMEAMLRQEFARAMAGMLYGFAECLFFLQPERP
IFNGARFLQEYCEESYVPFMSVVIDTLAFKYLLETQDSAPLRPFRDMLDK
ARRDALKKSGDHSKHHGGAGPRGAADEPSSAVEAFDGPFPVVTGGGDETD
RSRAASAASEASSTVASGTTAGAGAGAGVAGAGASRLPPPAFTIAAPSLD
SFVRRGSGGRGGQGSGDEEGGGQQEKDDDVDFSAVSRGKGDHDFSGTGIG
GDRGSSGGDGAQELEQAAEEVRQESPPRASAAAGGLAVPAPSTPGEEEGI
GAGTGAGTGGSLGSSGGRMRPISNERSSMRLSDARGGFIGGAMMGAKGRS
GSGAGGVGGADGIYSSPTGAGKGVYGVEADEMADEGEDDESRAAAAAAAA
AAATAAGSAQSKTRAPPEESDALCYDSAGDWASDGSDGLPAVLAVRKAGA
GGAPLARPASWLSTEVRVTEGGEKEESDVAAVAEEEEEEEAGATTTVSEA
TMVTEVVVPPPTQSAGESAHEEDSAETFGLATLGEGAAVLPMSPGRGNDD
PCPSGSISPSRAAAIAASASRKNSWGEGGSGRGGAGRGGWMGGTGISVRD
RVAALSASGRSRRDSGEGAGSAGEGGRGG
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