prot_S-dermatodea_contig8534.16705.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig8534.16705.1
Unique Nameprot_S-dermatodea_contig8534.16705.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length498
Homology
BLAST of mRNA_S-dermatodea_contig8534.16705.1 vs. uniprot
Match: D7FJF5_ECTSI (Galectin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJF5_ECTSI)

HSP 1 Score: 480 bits (1235), Expect = 4.660e-163
Identity = 278/516 (53.88%), Postives = 340/516 (65.89%), Query Frame = 0
Query:    1 MAARSGSRRSRKNSDADYVELPTPP-----PTSSRPASXXXXXXXRED-AADVLTPEEEYLLKVFRRYRKHDPTPPAATTRGVNDKVPNKRSP------SPLPDRAKASLP-SKAKPAGPSLAGESKMLSGSGRQGGAG----KAELSPAEPVSTDAVSRAKIILMEKKRKAAAASAGLARVASAASAGA-GVLRKAKINRIAGAPAASAMLDPVKYPATGLLLEREFRTFEEREEGGERVYTPVVPLIRSLTNFGLPENESG-----KTQRNETLVMRVTVPAHSQSWGVNISPEKHSEFTDVFFHFNPRRRFVAMNNREDNIWGQQEKFMLP-RWPDMFNVSINIAVQLDRTGFHIAVDGKYCATFAHRTDLPTNGSHMILQVMTEDDYGTNLGLVVHEVWWGHKEAMPGLPGAAKERSARSTDSWRAGDNDDSFIDLHVGNLPAMPAPEQQEAVRRRLTDMFQPFGSIQVRVFHRE-KSFGFIKFRDHSGASKALEELSGAEIQGRTMRLSKA 491
            MAA     R +  S+ D VELP P      PT  +PA+        ED AADVLTPEEEY                                       SP P   KAS P SK  P   + A      +G G+ G A     +AE  P  P  TDAVSRAK+IL EKKRKAAA      R  S AS+GA GVLRKAKI +  G P+++  LDP+KYPA+GLLL  E+RTF E E+ GERVY P+ PL+R L NFG+ ++ SG     K Q +ETLVMR T+PAHS SW +NI P+ H +F ++ FHFNPRRRFVAMNNRE NIWGQQEK ML  RWP++FNVSIN+AVQ+D  GFH+AVDGKYCATFAHRT +P +G  ++LQVMT DDY TNL LVVHE+WWGHK+ MPGLPG  KE + R+ ++WR  +++D+F+DLH   LP MP  + +E+VR+RL DMFQP+G+IQVRVFHRE K+FGFIKFR+H+ A+KALEEL GAE+ G+ MRLSKA
Sbjct:    1 MAATGRVSRRKTGSNDDLVELPPPSVRLKRPTRRKPAA--------EDLAADVLTPEEEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPSPPVPKASPPLSKGTPVATAAA----AAAGDGKPGIAAATVPQAEEKPG-PAPTDAVSRAKMIL-EKKRKAAA------RFGSGASSGAAGVLRKAKITKATGTPSSNPRLDPIKYPASGLLLRDEYRTFAEIEKDGERVYEPLDPLVRLLKNFGIADSNSGADGVAKKQFHETLVMRATIPAHSTSWAINICPKDHKDFEEILFHFNPRRRFVAMNNREGNIWGQQEKHMLSTRWPEVFNVSINVAVQIDAAGFHVAVDGKYCATFAHRTKVPPSGEELVLQVMTRDDYDTNLRLVVHEIWWGHKDTMPGLPGRDKEPNRRTAENWRGSNSNDAFVDLHAAGLPPMPTSDLEESVRKRLIDMFQPYGAIQVRVFHRESKNFGFIKFREHNDAAKALEELGGAEVHGKPMRLSKA 496          
BLAST of mRNA_S-dermatodea_contig8534.16705.1 vs. uniprot
Match: A0A6H5JWU1_9PHAE (Galectin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWU1_9PHAE)

HSP 1 Score: 419 bits (1078), Expect = 4.920e-142
Identity = 194/301 (64.45%), Postives = 238/301 (79.07%), Query Frame = 0
Query:  198 KYPATGLLLEREFRTFEEREEGGERVYTPVVPLIRSLTNFGLPENESG-----KTQRNETLVMRVTVPAHSQSWGVNISPEKHSEFTDVFFHFNPRRRFVAMNNREDNIWGQQEKFMLP-RWPDMFNVSINIAVQLDRTGFHIAVDGKYCATFAHRTDLPTNGSHMILQVMTEDDYGTNLGLVVHEVWWGHKEAMPGLPGAAKERSARSTDSWRAGDNDDSFIDLHVGNLPAMPAPEQQEAVRRRLTDMFQPFGSIQVRVFHRE-KSFGFIKFRDHSGASKALEELSGAEIQGRTMRLSKA 491
            KYPA+GLLL  E+RTF E E+ GER Y P+ PL+R L NFG+ ++ SG     K Q +ETLVMR T+PAHS SW +NI P+ H  F ++ FHFNPRRRFVAMNNRE NIWGQQEK ML  RWP++FNVSIN+AVQ+D  GFH+AVDGKYCATFAHRT +P N   ++LQVMT DDY TNL LVVHE+WWGHK+ MPGLPG  KE + R+ ++WR  +++D+F+DLH   LP MP  + QE+VR+RL DMFQP+G+IQVRVFHRE K+FGFIKFR+H+ A+KALEEL GAE+ G+ MRLSKA
Sbjct:   13 KYPASGLLLRDEYRTFAEIEKEGERAYEPLDPLVRLLKNFGIADSNSGADGVVKKQFHETLVMRATIPAHSTSWAINICPKDHKNFEEILFHFNPRRRFVAMNNREGNIWGQQEKHMLSTRWPEVFNVSINLAVQIDAAGFHVAVDGKYCATFAHRTKVPPNDEELVLQVMTRDDYDTNLPLVVHEIWWGHKDTMPGLPGRDKEPNRRTAENWRGSNSNDAFVDLHAAGLPPMPNSDLQESVRKRLVDMFQPYGAIQVRVFHRESKNFGFIKFREHNDAAKALEELGGAEVHGKPMRLSKA 313          
BLAST of mRNA_S-dermatodea_contig8534.16705.1 vs. uniprot
Match: A0A7S2WCV4_9STRA (Galectin n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WCV4_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.170e-19
Identity = 66/244 (27.05%), Postives = 111/244 (45.49%), Query Frame = 0
Query:  253 LVMRVTVPAHSQSWGVNISPEKHSEFTDVFFHFNPRRR---FVAMNNREDNIWGQQEKFMLPRWPDMFN-VSINIAVQLDRTGFHIAVDGKYCATFAHRTDLPTNGSHMILQVMTEDDYGTNLGLVVHEVWWGHKEAMPGLPGAAKERSARSTDSWRAGDNDDSFI----DLHVGNLPAMPAPEQQEAVRRRLTDMFQPFGSIQVRVFHREKSFGFIKFRDHSGASKALEELSGAEIQGRTMRL 488
            LV++  +P  SQ + +N+ P+ H   +++  HFNPR      + +N++ DN WG+  +      P +F      +         ++A+DG     F +R++ P  GS +ILQ+ T DDYG+     V  VWWG    +     A   R  +   + +  D   SF+    D+ VG LP   A  ++  +   L ++F        RV    K   F+ F   + A  A++    AE++GR + L
Sbjct:  167 LVIQAQIPDVSQKYAINLCPKDHRGGSEIMLHFNPRTERGGCLVLNDKRDNDWGRTIRIPAMECPPLFGREECQLTFHFGARHINLAIDGHLYCRFGYRSEPPAEGSDIILQLPTADDYGSPQMWTVKTVWWGPLSDL-----APAGRRTKWNGTIKTCDPPTSFLGQSSDIFVGGLPRDVADLRK--LESALLELFADMRPKHARVVP-GKGIAFVSFESPAAAQGAMDRHKNAELEGRRLIL 402          
BLAST of mRNA_S-dermatodea_contig8534.16705.1 vs. uniprot
Match: A0A7C6TDF6_9CHLR (RNA-binding protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C6TDF6_9CHLR)

HSP 1 Score: 52.8 bits (125), Expect = 3.900e-5
Identity = 29/82 (35.37%), Postives = 47/82 (57.32%), Query Frame = 0
Query:  416 LHVGNLPAMPAPEQQEAVRRRLTDMFQPFGSIQV------RVFHREKSFGFIKFRDHSGASKALEELSGAEIQGRTMRLSKA 491
            L+VGNLP   + E+       L D+F   G +        R   R K FGF++  + +GA  AL+EL+GA++ GRT+++++A
Sbjct:    5 LYVGNLPYRMSEEE-------LADVFSQAGEVTDVAIVIDRETGRSKGFGFVEMAEDAGAQVALQELNGAQVGGRTIKVAEA 79          
BLAST of mRNA_S-dermatodea_contig8534.16705.1 vs. uniprot
Match: A0A2E4PAT5_FLASP (RNA-binding protein n=1 Tax=Flavobacterium sp. TaxID=239 RepID=A0A2E4PAT5_FLASP)

HSP 1 Score: 53.1 bits (126), Expect = 5.030e-5
Identity = 29/81 (35.80%), Postives = 49/81 (60.49%), Query Frame = 0
Query:  414 IDLHVGNLPAMPAPEQQEAVRRRLTDMFQPFGSIQV---RVFHREKSFGFIKFRDHSGASKALEELSGAEIQGRTMRLSKA 491
            +++ +G+LP       +EA  R   + + P  S+++   R   R K FGF++  D + A KA+EEL+GA +QGRT+ ++KA
Sbjct:    1 MNIFIGSLPF----SIEEADLRESFEAYGPVSSVKIITDRETGRSKGFGFVEMPDDNEALKAIEELNGATVQGRTIVVNKA 77          
BLAST of mRNA_S-dermatodea_contig8534.16705.1 vs. uniprot
Match: A0A1F8JHX7_9BACT (RNA-binding protein n=1 Tax=Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_27_8 TaxID=1797601 RepID=A0A1F8JHX7_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 7.460e-5
Identity = 30/82 (36.59%), Postives = 43/82 (52.44%), Query Frame = 0
Query:  416 LHVGNLPAMPAPEQQEAVRRRLTDMFQPFGS------IQVRVFHREKSFGFIKFRDHSGASKALEELSGAEIQGRTMRLSKA 491
            L+VGNLP     +Q       L ++F PFG       I  R  H+ + FGF++        KA+EEL+G EI GRT  +++A
Sbjct:    3 LYVGNLPHALTEQQ-------LMEVFSPFGEVVSAKIITDRDTHKSRGFGFVEMSSKEEGEKAIEELNGKEIGGRTAVVNEA 77          
BLAST of mRNA_S-dermatodea_contig8534.16705.1 vs. uniprot
Match: A0A3D5BSW8_9DELT (RNA-binding protein n=2 Tax=Desulfomicrobium TaxID=898 RepID=A0A3D5BSW8_9DELT)

HSP 1 Score: 51.6 bits (122), Expect = 8.160e-5
Identity = 29/82 (35.37%), Postives = 50/82 (60.98%), Query Frame = 0
Query:  416 LHVGNLPAMPAPEQQEAVRRRLTDMFQPFGS------IQVRVFHREKSFGFIKFRDHSGASKALEELSGAEIQGRTMRLSKA 491
            ++VGNL    +          L +MF P+G+      I+ R   R + FGF++  D +GA+KA+ EL+GA+I+GRT+++++A
Sbjct:    5 IYVGNLSWSTSDAD-------LKNMFTPYGNVTSAHVIEDRETGRSRGFGFVEM-DDAGATKAISELNGADIEGRTLKVNEA 78          
BLAST of mRNA_S-dermatodea_contig8534.16705.1 vs. uniprot
Match: A0A6M1Z854_9BACT (RRM domain-containing protein n=4 Tax=Candidatus Anoxychlamydiales bacterium TaxID=2705072 RepID=A0A6M1Z854_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 9.240e-5
Identity = 32/82 (39.02%), Postives = 47/82 (57.32%), Query Frame = 0
Query:  416 LHVGNLPAMPAPEQQEAVRRRLTDMFQPFGSIQV------RVFHREKSFGFIKFRDHSGASKALEELSGAEIQGRTMRLSKA 491
            L+VGNLP   A  +QE     LTD+F  FG++        R   R + FGF++      A KA+EEL+G E+ GRT+ +++A
Sbjct:    3 LYVGNLPH--ATTEQE-----LTDIFAAFGAVVSAKIILDRDTGRSRGFGFVEMGSKDEAEKAIEELNGKEVGGRTIVVNEA 77          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8534.16705.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FJF5_ECTSI4.660e-16353.88Galectin n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A6H5JWU1_9PHAE4.920e-14264.45Galectin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID... [more]
A0A7S2WCV4_9STRA1.170e-1927.05Galectin n=1 Tax=Rhizochromulina marina TaxID=1034... [more]
A0A7C6TDF6_9CHLR3.900e-535.37RNA-binding protein n=1 Tax=Chloroflexi bacterium ... [more]
A0A2E4PAT5_FLASP5.030e-535.80RNA-binding protein n=1 Tax=Flavobacterium sp. Tax... [more]
A0A1F8JHX7_9BACT7.460e-536.59RNA-binding protein n=1 Tax=Chlamydiae bacterium R... [more]
A0A3D5BSW8_9DELT8.160e-535.37RNA-binding protein n=2 Tax=Desulfomicrobium TaxID... [more]
A0A6M1Z854_9BACT9.240e-539.02RRM domain-containing protein n=4 Tax=Candidatus A... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001079Galectin, carbohydrate recognition domainSMARTSM00908Gal_bind_lectin_2coord: 243..363
e-value: 0.003
score: 13.3
IPR001079Galectin, carbohydrate recognition domainPFAMPF00337Gal-bind_lectincoord: 250..350
e-value: 4.2E-10
score: 39.3
IPR001079Galectin, carbohydrate recognition domainPROSITEPS51304GALECTINcoord: 239..377
score: 14.726
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 415..489
e-value: 7.2E-10
score: 48.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 435..487
e-value: 8.1E-10
score: 38.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 414..493
score: 14.76
NoneNo IPR availableGENE3D2.60.120.200coord: 244..366
e-value: 7.6E-15
score: 56.5
NoneNo IPR availablePANTHERPTHR11346GALECTINcoord: 251..386
NoneNo IPR availablePANTHERPTHR11346:SF147GALECTINcoord: 251..386
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 392..492
e-value: 1.8E-13
score: 52.3
IPR013320Concanavalin A-like lectin/glucanase domain superfamilySUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 249..351
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 392..492

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8534contigS-dermatodea_contig8534:544..5386 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8534.16705.1mRNA_S-dermatodea_contig8534.16705.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig8534 252..6308 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig8534.16705.1 ID=prot_S-dermatodea_contig8534.16705.1|Name=mRNA_S-dermatodea_contig8534.16705.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=498bp
MAARSGSRRSRKNSDADYVELPTPPPTSSRPASTRRAAATREDAADVLTP
EEEYLLKVFRRYRKHDPTPPAATTRGVNDKVPNKRSPSPLPDRAKASLPS
KAKPAGPSLAGESKMLSGSGRQGGAGKAELSPAEPVSTDAVSRAKIILME
KKRKAAAASAGLARVASAASAGAGVLRKAKINRIAGAPAASAMLDPVKYP
ATGLLLEREFRTFEEREEGGERVYTPVVPLIRSLTNFGLPENESGKTQRN
ETLVMRVTVPAHSQSWGVNISPEKHSEFTDVFFHFNPRRRFVAMNNREDN
IWGQQEKFMLPRWPDMFNVSINIAVQLDRTGFHIAVDGKYCATFAHRTDL
PTNGSHMILQVMTEDDYGTNLGLVVHEVWWGHKEAMPGLPGAAKERSARS
TDSWRAGDNDDSFIDLHVGNLPAMPAPEQQEAVRRRLTDMFQPFGSIQVR
VFHREKSFGFIKFRDHSGASKALEELSGAEIQGRTMRLSKAGTSTHR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001079Galectin_CRD
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR013320ConA-like_dom_sf
IPR035979RBD_domain_sf