prot_S-dermatodea_contig853.16701.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-dermatodea_contig853.16701.1
Unique Name	prot_S-dermatodea_contig853.16701.1
Type	polypeptide
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length	303

Homology

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BLAST of mRNA_S-dermatodea_contig853.16701.1 vs. uniprot
Match: D7G5N8_ECTSI (Ferredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5N8_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 8.850e-73
Identity = 180/301 (59.80%), Postives = 207/301 (68.77%), Query Frame = 0

Query:   13 LSMACGLLLLAYCSLCGAFLPPPVVTTLRHRGSSLAWARDRRGRGATS-----SAVRMQQ---SDEELQVAVRTLAAQVEDLTAIVRRLAEETGPGAGGAEVAPSATSHNINGSAAGNGAGVPGVTA---AGVKELVSTSAAQQRIERWLSESGGGQTVTASPQAPAVSPVAVASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTGYKVKIEWDGAIHEVMCDAETTVLEAAMDAGLELPHSCMSGSCLTCPGKLVSGSVDQSEGVLEDEQTEAGYLLTCISYPQSDLHFAVIEEDELP 302
            L++AC L   A+C LCGAF+PP                               SAVRMQQ   SD+ELQVAV  LA QVE+LTA+V +LA E G  AG A+         ING     G+ +P V+     G   LVSTSAAQQRI++WL ESGG     A+    A         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXG+GYKVKIEW+GAIHEV CDAETT+LEAAMDAGLELP SCMSGSCLTCPGK+VSGSVDQSEGVLEDEQ +AG+LLTCISYP+SD+HFAV++E++LP
Sbjct:   11 LTLACAL---AWCGLCGAFVPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAVRMQQGSGSDQELQVAVSKLAGQVEELTAMVAQLAAEPGGNAGAAKA--------INGGVVDGGSALPVVSTKAKGGSTPLVSTSAAQQRIDQWLRESGG----EAASAPVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGYKVKIEWEGAIHEVNCDAETTLLEAAMDAGLELPSSCMSGSCLTCPGKIVSGSVDQSEGVLEDEQKDAGFLLTCISYPESDVHFAVVDEEDLP 296

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BLAST of mRNA_S-dermatodea_contig853.16701.1 vs. uniprot
Match: A0A835YL41_9STRA (Ferredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL41_9STRA)

HSP 1 Score: 157 bits (396), Expect = 3.510e-43
Identity = 125/248 (50.40%), Postives = 145/248 (58.47%), Query Frame = 0

Query:   68 SDEELQVAVRTLAAQVEDLTAIVRRLAEETGPGAGGAEVAPSATSHNINGSAAGNGAGVP--------GVTAAGVKE------LVSTSAAQQRIERWLSESGGGQTVTASPQAPAVSPVAVASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTGYKVKIEWDGAIHEVMCDAETTVLEAAMDAGLELPHSCMSGSCLTCPGKLVSGSVDQSEGVLEDEQTEAGYLLTCISYPQSDLHFAVIEEDEL 301
            S +EL  AV  L AQV  LTA+V+ +A      A GA  AP+A           NGA VP        G+ A  V        LV  SAA+ RI+ +L+  G              +P      XXXXXXXXXXXXX      XXXXX     G GY V I+WDGA H V CD ETTVLEAAMDAGL+LPHSCMSGSCLTCPG+L +G V+Q +GVLED+Q  AG +LTC+SYP SDL F VI EDEL
Sbjct:    8 SPQELVKAVEALQAQVTQLTALVKEMAASE---ANGAAAAPAAKI---------NGAAVPLKAPTLQTGLIAGTVASAPPGEILVPVSAAEARIQSFLASQG------------KAAPXXXXXXXXXXXXXXXXXXXAAVPAAXXXXXPEAPPGDGYVVTIDWDGATHVVRCDGETTVLEAAMDAGLDLPHSCMSGSCLTCPGRLSAGRVEQGDGVLEDDQIAAGLMLTCVSYPLSDLRFEVIGEDEL 231

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BLAST of mRNA_S-dermatodea_contig853.16701.1 vs. uniprot
Match: UPI0010A2FF49 (ferredoxin C 1, chloroplastic n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A2FF49)

HSP 1 Score: 115 bits (288), Expect = 3.450e-28
Identity = 52/92 (56.52%), Postives = 64/92 (69.57%), Query Frame = 0

Query:  210 YKVKIEWDGAIHEVMCDAETTVLEAAMDAGLELPHSCMSGSCLTCPGKLVSGSVDQSEGVLEDEQTEAGYLLTCISYPQSDLHFAVIEEDEL 301
            YKV IE  G + E+  D E T+L  A+D+GLE+PH C  G C+TCP +L+SGSVDQSEG+L D+  E GY L C SYP+SD H   I EDEL
Sbjct:   46 YKVVIEHQGELRELEIDPEETILSKALDSGLEVPHDCKLGVCMTCPARLLSGSVDQSEGMLSDDVVERGYALLCASYPRSDCHIRTIPEDEL 137

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BLAST of mRNA_S-dermatodea_contig853.16701.1 vs. uniprot
Match: A0A2J6KNW1_LACSA (Ferredoxin n=3 Tax=Lactuca TaxID=4235 RepID=A0A2J6KNW1_LACSA)

HSP 1 Score: 114 bits (285), Expect = 1.040e-27
Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 0

Query:  210 YKVKIEWDGAIHEVMCDAETTVLEAAMDAGLELPHSCMSGSCLTCPGKLVSGSVDQSEGVLEDEQTEAGYLLTCISYPQSDLHFAVIEEDEL 301
            YKV IE +G   E+  D + T+LE A+D+G+ +PH C  G C+TCP KL+SGSVDQSEG+L D+  E GY L C+SYP+SD H  +I E+EL
Sbjct:   49 YKVAIEHEGETTELEVDPDETILEKALDSGMSVPHDCKLGVCMTCPAKLLSGSVDQSEGMLSDDVIERGYSLLCVSYPKSDCHIKIIPEEEL 140

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BLAST of mRNA_S-dermatodea_contig853.16701.1 vs. uniprot
Match: A0A103Y2Z7_CYNCS (Ferredoxin n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103Y2Z7_CYNCS)

HSP 1 Score: 114 bits (284), Expect = 1.380e-27
Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 0

Query:  210 YKVKIEWDGAIHEVMCDAETTVLEAAMDAGLELPHSCMSGSCLTCPGKLVSGSVDQSEGVLEDEQTEAGYLLTCISYPQSDLHFAVIEEDEL 301
            YKV IE +G   E+  D + T+LE A+D GL++PH C  G C+TCP KL+SGSV+QSEG+L D+  E GY L C+SYP+SD H  +I E+EL
Sbjct:   47 YKVSIEHEGQTTELEVDPDETILEKALDTGLDVPHDCKLGVCMTCPAKLLSGSVNQSEGMLSDDVIERGYSLLCVSYPKSDCHIKIIPEEEL 138

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BLAST of mRNA_S-dermatodea_contig853.16701.1 vs. uniprot
Match: A0A0B2R7M6_GLYSO (Ferredoxin C 1, chloroplastic n=2 Tax=Glycine subgen. Soja TaxID=1462606 RepID=A0A0B2R7M6_GLYSO)

HSP 1 Score: 113 bits (282), Expect = 2.650e-27
Identity = 50/92 (54.35%), Postives = 64/92 (69.57%), Query Frame = 0

Query:  210 YKVKIEWDGAIHEVMCDAETTVLEAAMDAGLELPHSCMSGSCLTCPGKLVSGSVDQSEGVLEDEQTEAGYLLTCISYPQSDLHFAVIEEDEL 301
            YKV IE DG   EV  + + T+L  A+D+GL +PH C  G C+TCP +L+SGSVDQS+G+L D+  E GY L C +YPQSD H  +I EDEL
Sbjct:   46 YKVVIEHDGESTEVEVEPDETILSKALDSGLSVPHDCKLGVCMTCPARLISGSVDQSDGMLSDDVVERGYALLCAAYPQSDCHIKIIPEDEL 137

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BLAST of mRNA_S-dermatodea_contig853.16701.1 vs. uniprot
Match: A0A7J7LHT5_9MAGN (Ferredoxin n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7LHT5_9MAGN)

HSP 1 Score: 112 bits (279), Expect = 6.000e-27
Identity = 49/92 (53.26%), Postives = 65/92 (70.65%), Query Frame = 0

Query:  210 YKVKIEWDGAIHEVMCDAETTVLEAAMDAGLELPHSCMSGSCLTCPGKLVSGSVDQSEGVLEDEQTEAGYLLTCISYPQSDLHFAVIEEDEL 301
            YKV IE +G+I E+  D + T+L  A+D GL +PH C  G C+TCP KL+SGSVDQSEG+L D+  + GY L C++YP+SD H   I E+EL
Sbjct:   39 YKVVIEHEGSIKELEVDEDETILNKALDIGLSVPHDCKLGVCMTCPAKLMSGSVDQSEGMLSDDVVDNGYALLCVAYPRSDCHIRTIPEEEL 130

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BLAST of mRNA_S-dermatodea_contig853.16701.1 vs. uniprot
Match: A0A6P5SE90_PRUAV (Ferredoxin n=7 Tax=Prunus TaxID=3754 RepID=A0A6P5SE90_PRUAV)

HSP 1 Score: 112 bits (279), Expect = 7.320e-27
Identity = 48/92 (52.17%), Postives = 65/92 (70.65%), Query Frame = 0

Query:  210 YKVKIEWDGAIHEVMCDAETTVLEAAMDAGLELPHSCMSGSCLTCPGKLVSGSVDQSEGVLEDEQTEAGYLLTCISYPQSDLHFAVIEEDEL 301
            YKV +E +G   E+  +A+ T+LE A+++GL +PH C  G C+TCP +L+SG VDQ+EG+L D+  E GY L C+SYPQSD H   I EDEL
Sbjct:   46 YKVVVEHEGLSTELEVEADETILEKALESGLSVPHDCKLGVCMTCPARLLSGKVDQNEGMLSDDVVEGGYTLLCVSYPQSDCHIKTIPEDEL 137

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BLAST of mRNA_S-dermatodea_contig853.16701.1 vs. uniprot
Match: A0A1S2YX51_CICAR (ferredoxin C 1, chloroplastic n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2YX51_CICAR)

HSP 1 Score: 112 bits (279), Expect = 7.750e-27
Identity = 49/94 (52.13%), Postives = 65/94 (69.15%), Query Frame = 0

Query:  208 TGYKVKIEWDGAIHEVMCDAETTVLEAAMDAGLELPHSCMSGSCLTCPGKLVSGSVDQSEGVLEDEQTEAGYLLTCISYPQSDLHFAVIEEDEL 301
            + YKV IE +G   ++  + + T+L  A+D+GL +PH C  G C+TCP KL+SGSVDQS+G+L D+  E GY L C SYP+SD HF  I EDEL
Sbjct:   46 SSYKVVIEHEGQTTQLEVEPDETILSKALDSGLSVPHDCKLGVCMTCPAKLISGSVDQSDGMLSDDVVERGYALLCASYPRSDCHFRTIPEDEL 139

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BLAST of mRNA_S-dermatodea_contig853.16701.1 vs. uniprot
Match: K7LMC9_SOYBN (Ferredoxin n=2 Tax=Glycine subgen. Soja TaxID=1462606 RepID=K7LMC9_SOYBN)

HSP 1 Score: 111 bits (278), Expect = 1.030e-26
Identity = 49/92 (53.26%), Postives = 64/92 (69.57%), Query Frame = 0

Query:  210 YKVKIEWDGAIHEVMCDAETTVLEAAMDAGLELPHSCMSGSCLTCPGKLVSGSVDQSEGVLEDEQTEAGYLLTCISYPQSDLHFAVIEEDEL 301
            YKV IE DG   EV  + + T+L  A+D+GL +PH C  G C+TCP +L+SGSVDQS+G+L D+  E GY L C +YPQSD H  +I E+EL
Sbjct:   46 YKVVIEHDGESTEVEVEPDETILSKALDSGLSVPHDCKLGVCMTCPARLISGSVDQSDGMLSDDVVERGYALLCAAYPQSDCHIKIIPEEEL 137

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig853.16701.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig853.16701.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G5N8_ECTSI	8.850e-73	59.80	Ferredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G...	[more]
A0A835YL41_9STRA	3.510e-43	50.40	Ferredoxin n=1 Tax=Tribonema minus TaxID=303371 Re...	[more]
UPI0010A2FF49	3.450e-28	56.52	ferredoxin C 1, chloroplastic n=1 Tax=Prosopis alb...	[more]
A0A2J6KNW1_LACSA	1.040e-27	54.35	Ferredoxin n=3 Tax=Lactuca TaxID=4235 RepID=A0A2J6...	[more]
A0A103Y2Z7_CYNCS	1.380e-27	54.35	Ferredoxin n=1 Tax=Cynara cardunculus var. scolymu...	[more]
A0A0B2R7M6_GLYSO	2.650e-27	54.35	Ferredoxin C 1, chloroplastic n=2 Tax=Glycine subg...	[more]
A0A7J7LHT5_9MAGN	6.000e-27	53.26	Ferredoxin n=1 Tax=Kingdonia uniflora TaxID=39325 ...	[more]
A0A6P5SE90_PRUAV	7.320e-27	52.17	Ferredoxin n=7 Tax=Prunus TaxID=3754 RepID=A0A6P5S...	[more]
A0A1S2YX51_CICAR	7.750e-27	52.13	ferredoxin C 1, chloroplastic n=1 Tax=Cicer arieti...	[more]
K7LMC9_SOYBN	1.030e-26	53.26	Ferredoxin n=2 Tax=Glycine subgen. Soja TaxID=1462...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 76..96
None	No IPR available	PANTHER	PTHR43112	FAMILY NOT NAMED	coord: 201..301
None	No IPR available	PANTHER	PTHR43112:SF9	FERREDOXIN C 1, CHLOROPLASTIC	coord: 201..301
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 13..25
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 26..30
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..30
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..12
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 31..302
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..30 score: 0.839
None	No IPR available	TMHMM	TMhelix		coord: 13..35
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 189..301 e-value: 3.0E-24 score: 87.0
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAM	TIGR02008	TIGR02008	coord: 210..301 e-value: 1.6E-26 score: 89.9
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 215..287 e-value: 6.3E-13 score: 48.5
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 210..299 score: 11.348
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 195..299

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig853	contig	S-dermatodea_contig853:15451..18632 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig853.16701.1	mRNA_S-dermatodea_contig853.16701.1	Saccorhiza dermatodea SderLu1190fm monoicous	mRNA	S-dermatodea_contig853 15277..20071 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-dermatodea_contig853.16701.1 ID=prot_S-dermatodea_contig853.16701.1|Name=mRNA_S-dermatodea_contig853.16701.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=303bp
MMMMQPPSPTRRLSMACGLLLLAYCSLCGAFLPPPVVTTLRHRGSSLAWA
RDRRGRGATSSAVRMQQSDEELQVAVRTLAAQVEDLTAIVRRLAEETGPG
AGGAEVAPSATSHNINGSAAGNGAGVPGVTAAGVKELVSTSAAQQRIERW
LSESGGGQTVTASPQAPAVSPVAVASPAVAEVVATPVAPEVEAPPAEAVP
AAAAPAGTGYKVKIEWDGAIHEVMCDAETTVLEAAMDAGLELPHSCMSGS
CLTCPGKLVSGSVDQSEGVLEDEQTEAGYLLTCISYPQSDLHFAVIEEDE
LP*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012675	Beta-grasp_dom_sf
IPR010241	Fd_pln
IPR001041	2Fe-2S_ferredoxin-type
IPR036010	2Fe-2S_ferredoxin-like_sf