prot_S-dermatodea_contig8243.16442.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig8243.16442.1
Unique Nameprot_S-dermatodea_contig8243.16442.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length62
Homology
BLAST of mRNA_S-dermatodea_contig8243.16442.1 vs. uniprot
Match: D8LPU6_ECTSI (Sm-like protein LSm7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPU6_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 8.430e-22
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 0
Query:    1 VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDGCIEYIR 45
            VLDLQKYLDQGVRVKLQGGREV GVLKGFDPLVNVVLD CIE+IR
Sbjct:   12 VLDLQKYLDQGVRVKLQGGREVHGVLKGFDPLVNVVLDECIEFIR 56          
BLAST of mRNA_S-dermatodea_contig8243.16442.1 vs. uniprot
Match: A0A8C8UNV2_PERMB (LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated n=1 Tax=Peromyscus maniculatus bairdii TaxID=230844 RepID=A0A8C8UNV2_PERMB)

HSP 1 Score: 81.6 bits (200), Expect = 5.730e-19
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 0
Query:    1 VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDGCIEYIRGELRRKNRH 54
            +LDL KY+D+ +RVK QGGRE  G+LKGFDPL+N+VLDG IEY+RGEL    RH
Sbjct:   13 ILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRGELWLWGRH 66          
BLAST of mRNA_S-dermatodea_contig8243.16442.1 vs. uniprot
Match: UPI001C4CA62A (U6 snRNA-associated Sm-like protein LSm7 isoform X2 n=1 Tax=Sceloporus undulatus TaxID=8520 RepID=UPI001C4CA62A)

HSP 1 Score: 80.9 bits (198), Expect = 1.730e-18
Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = 0
Query:    1 VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDGCIEYIRGELRRK 51
            +LDL KY+D+ +RVK QGGRE  GVLKGFDPL+N+VLDG IEY+RG  RR+
Sbjct:   18 ILDLSKYIDKTIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRGGFRRR 68          
BLAST of mRNA_S-dermatodea_contig8243.16442.1 vs. uniprot
Match: A0A7J7KTA2_BUGNE (LSM7 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7KTA2_BUGNE)

HSP 1 Score: 80.9 bits (198), Expect = 2.380e-18
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 0
Query:    1 VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDGCIEYIR 45
            +LDL KY+D+ +RVK  GGREV GVLKGFDPLVN+VLDGCIEY+R
Sbjct:   21 ILDLSKYIDRAIRVKFTGGREVSGVLKGFDPLVNLVLDGCIEYVR 65          
BLAST of mRNA_S-dermatodea_contig8243.16442.1 vs. uniprot
Match: A0A836C8L6_9STRA (Sm-like protein LSm7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8L6_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.940e-18
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 0
Query:    1 VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDGCIEYIR 45
            VLDL KYLDQGVRVK QGGREV GVLKG+D LVN+VLD C+E+IR
Sbjct:    9 VLDLTKYLDQGVRVKFQGGREVSGVLKGYDQLVNLVLDDCVEFIR 53          
BLAST of mRNA_S-dermatodea_contig8243.16442.1 vs. uniprot
Match: A0A8C0FRF5_BUBBB (LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated n=1 Tax=Bubo bubo TaxID=30461 RepID=A0A8C0FRF5_BUBBB)

HSP 1 Score: 79.0 bits (193), Expect = 4.990e-18
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 0
Query:    1 VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDGCIEYIRGEL 48
            +LDL KY+D+ +RVK QGGRE  GVLKGFDPL+N+VLDG IEY+RG L
Sbjct:    3 ILDLSKYIDKTIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRGNL 50          
BLAST of mRNA_S-dermatodea_contig8243.16442.1 vs. uniprot
Match: A0A8I6A0C6_RAT (LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated n=1 Tax=Rattus norvegicus TaxID=10116 RepID=A0A8I6A0C6_RAT)

HSP 1 Score: 80.5 bits (197), Expect = 5.370e-18
Identity = 34/48 (70.83%), Postives = 42/48 (87.50%), Query Frame = 0
Query:    1 VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDGCIEYIRGEL 48
            +LDL KY+D+ +RVK QGGRE  G+LKGFDPL+N+VLDG IEY+RGEL
Sbjct:   50 ILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRGEL 97          
BLAST of mRNA_S-dermatodea_contig8243.16442.1 vs. uniprot
Match: A0A7S2CML5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CML5_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.250e-17
Identity = 33/45 (73.33%), Postives = 41/45 (91.11%), Query Frame = 0
Query:    1 VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDGCIEYIR 45
            +LDL KY+DQGVRVK QGGREV+G+LKG+D LVN+VLD C+EY+R
Sbjct:   31 ILDLNKYVDQGVRVKFQGGREVQGILKGYDQLVNLVLDECVEYLR 75          
BLAST of mRNA_S-dermatodea_contig8243.16442.1 vs. uniprot
Match: A0A8C9LU97_9PRIM (LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated n=1 Tax=Piliocolobus tephrosceles TaxID=591936 RepID=A0A8C9LU97_9PRIM)

HSP 1 Score: 78.6 bits (192), Expect = 1.450e-17
Identity = 33/47 (70.21%), Postives = 41/47 (87.23%), Query Frame = 0
Query:    1 VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDGCIEYIRGE 47
            +LDL KY+D+ +RVK QGGRE  G+LKGFDPL+N+VLDG IEY+RGE
Sbjct:   12 ILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRGE 58          
BLAST of mRNA_S-dermatodea_contig8243.16442.1 vs. uniprot
Match: A0A2P4SFN4_BAMTH (Sm domain-containing protein n=3 Tax=Neognathae TaxID=8825 RepID=A0A2P4SFN4_BAMTH)

HSP 1 Score: 77.4 bits (189), Expect = 1.930e-17
Identity = 33/47 (70.21%), Postives = 41/47 (87.23%), Query Frame = 0
Query:    1 VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDGCIEYIRGE 47
            +LDL KY+D+ +RVK QGGRE  GVLKGFDPL+N+VLDG IEY+RG+
Sbjct:   25 ILDLSKYIDKTIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRGK 71          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8243.16442.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPU6_ECTSI8.430e-2293.33Sm-like protein LSm7 n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A8C8UNV2_PERMB5.730e-1966.67LSM7 homolog, U6 small nuclear RNA and mRNA degrad... [more]
UPI001C4CA62A1.730e-1868.63U6 snRNA-associated Sm-like protein LSm7 isoform X... [more]
A0A7J7KTA2_BUGNE2.380e-1875.56LSM7 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A... [more]
A0A836C8L6_9STRA4.940e-1880.00Sm-like protein LSm7 n=1 Tax=Tribonema minus TaxID... [more]
A0A8C0FRF5_BUBBB4.990e-1870.83LSM7 homolog, U6 small nuclear RNA and mRNA degrad... [more]
A0A8I6A0C6_RAT5.370e-1870.83LSM7 homolog, U6 small nuclear RNA and mRNA degrad... [more]
A0A7S2CML5_9STRA1.250e-1773.33Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8C9LU97_9PRIM1.450e-1770.21LSM7 homolog, U6 small nuclear RNA and mRNA degrad... [more]
A0A2P4SFN4_BAMTH1.930e-1770.21Sm domain-containing protein n=3 Tax=Neognathae Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 2..54
e-value: 3.2E-8
score: 43.3
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 3..47
e-value: 1.4E-15
score: 56.7
NoneNo IPR availablePIRSFPIRSF037188Lsm7coord: 1..59
e-value: 1.7E-19
score: 67.7
NoneNo IPR availableGENE3D2.30.30.100coord: 1..59
e-value: 5.7E-17
score: 63.4
NoneNo IPR availablePANTHERPTHR10553:SF5U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM7coord: 1..47
NoneNo IPR availablePANTHERPTHR10553SMALL NUCLEAR RIBONUCLEOPROTEINcoord: 1..47
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 4..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8243contigS-dermatodea_contig8243:6780..6965 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8243.16442.1mRNA_S-dermatodea_contig8243.16442.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig8243 6780..6965 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig8243.16442.1 ID=prot_S-dermatodea_contig8243.16442.1|Name=mRNA_S-dermatodea_contig8243.16442.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=62bp
VLDLQKYLDQGVRVKLQGGREVRGVLKGFDPLVNVVLDGCIEYIRGELRR
KNRHGRKGRGSG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf