prot_S-dermatodea_contig7975.16166.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig7975.16166.1
Unique Nameprot_S-dermatodea_contig7975.16166.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length489
Homology
BLAST of mRNA_S-dermatodea_contig7975.16166.1 vs. uniprot
Match: D8LMH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMH1_ECTSI)

HSP 1 Score: 353 bits (907), Expect = 1.260e-111
Identity = 220/436 (50.46%), Postives = 259/436 (59.40%), Query Frame = 0
Query:    1 MNEVKAEFPTKSHADVIEFYYNWKFHEPDYSRWQVTKRQIDIILTWPDFHQEICEVCEEGGELLLCDTCSLAFHLHCLSPPLEEPPLNDWSCPKCLMNHHTAESRAKAKLFVKQKILSIEAERRSMAEEEERRHERQVMYGYMGQASTGMGHGSKRGAGGGATNVERTXXXXXXXXXXXXXXERELSNRVWGKEDLAHLQRAVEEFGECGWRAMMSDDKYKSLFYLRSLPIVKSMYRLQKDNDLKRAKSKARTAARADXXXXXR------AEGDVVKE-TRENTASIEADAAATAIALTHTEAHESVDYPNEEGGGTGVISDKDRAREWRAMLQKSVLEHGVGEWAAKLKVPAYSRLREIGCPSTLANHWRSMRHRLRRRLDRHRVAGKDARPLRASKGATLKGPVQWRGF--AY--GVNEAVPPSHAEMNAEMGE 425
            MN+V  EF TKSH DVIEFYYNWKFHEPDYSRWQ+ KRQIDI L                                                             A+AKLFVKQ+I+SIE ERR MA+EEERRHERQ +YGY+GQAS G+ HG KRG G  A+N E                ERELSNR W KEDLA LQRAV+EFGE GWRAMM+++K+KSLF++RS  IVKSM+R+ KDN+LKRAK++AR AARAD    X       A+GD  K+  RE  +  EADAAA A+A+  TEAHESVD P EE GG G   DK RARE RA+LQK ++EHGVG    KL +P YS L+E G  S L NHWRSM+HRLRRRL+R  +  K  +P R  K    K   Q+ GF  AY    N   P + A  N E G+
Sbjct:  262 MNDVAEEFATKSHGDVIEFYYNWKFHEPDYSRWQLMKRQIDIAL-------------------------------------------------------------ARAKLFVKQRIVSIEEERRCMAQEEERRHERQALYGYLGQASAGIEHGHKRGGGASASNAENRRQRIMGHEEAEAQAERELSNRPWAKEDLAQLQRAVDEFGERGWRAMMANEKHKSLFHMRSPFIVKSMHRMLKDNELKRAKARARMAARADTKAKXXGDAIAGADGDPAKDFCREAVSFAEADAAAAAVAMARTEAHESVDNPGEEAGGAGTFDDKSRARERRALLQKLIMEHGVGGVKTKLDMPVYSALKEEGSQSVLINHWRSMQHRLRRRLERLGMVPK-RKPGRPPKNPPTK---QYPGFEAAYPGSTNVGAPTTQATGNNERGD 632          
BLAST of mRNA_S-dermatodea_contig7975.16166.1 vs. uniprot
Match: A0A4D9CS67_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CS67_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 3.690e-17
Identity = 43/118 (36.44%), Postives = 69/118 (58.47%), Query Frame = 0
Query:    3 EVKAEFPTKSHADVIEFYYNWKFHEPDYSRWQVTKRQIDIILTWPDFHQEICEVCEEGGELLLCDTCSLAFHLHCLSPPLEEPPLNDWSCPKCLMNHHTAESRAKAKLFVKQKILSIE 120
            ++KA  P +S  DV+  +Y WK    DY  W+  +    +    PD+H ++C++CE  G+LL CDTC+LAFH+ CL    E+ P  D+SC +C   + T   R +AK +V+ K+  ++
Sbjct:  189 QIKALLPKRSVQDVVAHFYEWK-QRADYRAWKADRPLQYLEHAIPDYHADVCDMCERPGDLLCCDTCNLAFHMKCLGFRDEDVP-EDFSCSQCQAQYLTTSERERAKRWVESKVRKVQ 304          
BLAST of mRNA_S-dermatodea_contig7975.16166.1 vs. uniprot
Match: W7TMX5_9STRA (Nucleosome-remodeling factor subunit, putative n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMX5_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.130e-16
Identity = 43/118 (36.44%), Postives = 69/118 (58.47%), Query Frame = 0
Query:    3 EVKAEFPTKSHADVIEFYYNWKFHEPDYSRWQVTKRQIDIILTWPDFHQEICEVCEEGGELLLCDTCSLAFHLHCLSPPLEEPPLNDWSCPKCLMNHHTAESRAKAKLFVKQKILSIE 120
            ++KA  P +S  DV+  +Y WK    DY  W+  +    +    PD+H ++C++CE  G+LL CDTC+LAFH+ CL    E+ P  D+SC +C   + T   R +AK +V+ K+  ++
Sbjct:  386 QIKALLPKRSVQDVVAHFYEWK-QRADYRAWKADRPLQYLEHAIPDYHADVCDMCERPGDLLCCDTCNLAFHMKCLGFRDEDVP-EDFSCSQCQAQYLTTSERERAKRWVESKVRKVQ 501          
BLAST of mRNA_S-dermatodea_contig7975.16166.1 vs. uniprot
Match: A0A7D9J5R6_PARCT (Chromodomain-helicase-DNA-binding 4-like isoform X3 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9J5R6_PARCT)

HSP 1 Score: 88.2 bits (217), Expect = 1.770e-15
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 0
Query:   48 DFHQEICEVCEEGGELLLCDTCSLAFHLHCLSPPLEEPPLNDWSCPKC 95
            D HQ+ CEVCEE GELLLCDTC+L+FHL CL PPL+E P  +WSCPKC
Sbjct:  291 DQHQDYCEVCEESGELLLCDTCTLSFHLQCLDPPLDEAPEGEWSCPKC 338          
BLAST of mRNA_S-dermatodea_contig7975.16166.1 vs. uniprot
Match: A0A6S7JFV3_PARCT (Chromodomain-helicase-DNA-binding 4-like isoform X3 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JFV3_PARCT)

HSP 1 Score: 88.2 bits (217), Expect = 9.600e-15
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 0
Query:   48 DFHQEICEVCEEGGELLLCDTCSLAFHLHCLSPPLEEPPLNDWSCPKC 95
            D HQ+ CEVCEE GELLLCDTC+L+FHL CL PPL+E P  +WSCPKC
Sbjct:   28 DQHQDYCEVCEESGELLLCDTCTLSFHLQCLDPPLDEAPEGEWSCPKC 75          
BLAST of mRNA_S-dermatodea_contig7975.16166.1 vs. uniprot
Match: UPI001F044032 (LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 4-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F044032)

HSP 1 Score: 88.6 bits (218), Expect = 9.890e-15
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 0
Query:   50 HQEICEVCEEGGELLLCDTCSLAFHLHCLSPPLEEPPLNDWSCPKC 95
            HQ+ CEVCEE GELLLCDTCSL++HLHCL PPL+E P   WSCPKC
Sbjct:  309 HQDYCEVCEESGELLLCDTCSLSYHLHCLDPPLDEAPQGIWSCPKC 354          
BLAST of mRNA_S-dermatodea_contig7975.16166.1 vs. uniprot
Match: UPI00106CCECF (chromodomain-helicase-DNA-binding protein 4-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106CCECF)

HSP 1 Score: 88.2 bits (217), Expect = 1.320e-14
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 0
Query:   48 DFHQEICEVCEEGGELLLCDTCSLAFHLHCLSPPLEEPPLNDWSCPKC 95
            D HQ+ CEVCEE GELLLCDTC+L+FHL CL PPL+E P  +WSCPKC
Sbjct:  306 DQHQDYCEVCEESGELLLCDTCTLSFHLQCLDPPLDEAPEGEWSCPKC 353          
BLAST of mRNA_S-dermatodea_contig7975.16166.1 vs. uniprot
Match: A0A7R9UFM1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFM1_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.120e-14
Identity = 37/92 (40.22%), Postives = 59/92 (64.13%), Query Frame = 0
Query:   35 VTKRQIDIILTWPDFHQEICEVCEEGGELLLCDTCSLAFHLHCLSPPLEEPPLNDWSCPKCLMNHHTAESRAKAKLFVKQKILSIEAERRSM 126
            V K + DI    PD+H ++CE+C+EGG+++ CDTC+L++H  CL P LE+ P   W CP C +   +A   AKAK +V +++  ++  R S+
Sbjct:    1 VKKVEEDI----PDWHNDVCEICDEGGDIICCDTCNLSYHGSCLEPKLEDVP-EFWMCPACRVKFVSAADIAKAKEYVNRQVERVQELRESI 87          
BLAST of mRNA_S-dermatodea_contig7975.16166.1 vs. uniprot
Match: UPI000852357D (chromodomain-helicase-DNA-binding protein Mi-2 homolog n=1 Tax=Cyphomyrmex costatus TaxID=456900 RepID=UPI000852357D)

HSP 1 Score: 78.6 bits (192), Expect = 2.260e-14
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0
Query:   48 DFHQEICEVCEEGGELLLCDTCSLAFHLHCLSPPLEEPPLNDWSCPKC 95
            D H E C VC++GGELL CD+C+ A+H HCL+PPL E P +DW CP+C
Sbjct:   27 DEHMEFCRVCKDGGELLCCDSCTSAYHTHCLNPPLSEIPDDDWKCPRC 74          
BLAST of mRNA_S-dermatodea_contig7975.16166.1 vs. uniprot
Match: A0A7S1C3G3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3G3_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.390e-14
Identity = 43/119 (36.13%), Postives = 71/119 (59.66%), Query Frame = 0
Query:    4 VKAEFPTKSHADVIEFYYN-WKFHEPDYSRWQVTKRQIDIILTWPDFHQEICEVCEEGGELLLCDTCSLAFHLHCLSPPLEEPPLNDWSCPKCLMNHHTAESRAKAKLFVKQKILSIEA 121
            V  + P ++  + +E++Y  WK   P +S+W   KR +   L   +FH ++C VC  GG+LL CD+CSLAFH+ CL PPL + P  DW+CP+C     +     +A+++V ++   ++A
Sbjct:   84 VAMDIPHRTARECVEYFYGVWK-KLPRHSQW---KRGLGRSL---EFHDDVCAVCGSGGDLLCCDSCSLAFHVSCLRPPLFDLPEEDWACPRC--RELSVPELERARVYVGEECARLDA 193          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig7975.16166.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMH1_ECTSI1.260e-11150.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9CS67_9STRA3.690e-1736.44Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TMX5_9STRA1.130e-1636.44Nucleosome-remodeling factor subunit, putative n=1... [more]
A0A7D9J5R6_PARCT1.770e-1572.92Chromodomain-helicase-DNA-binding 4-like isoform X... [more]
A0A6S7JFV3_PARCT9.600e-1572.92Chromodomain-helicase-DNA-binding 4-like isoform X... [more]
UPI001F0440329.890e-1576.09LOW QUALITY PROTEIN: chromodomain-helicase-DNA-bin... [more]
UPI00106CCECF1.320e-1472.92chromodomain-helicase-DNA-binding protein 4-like n... [more]
A0A7R9UFM1_9STRA2.120e-1440.22Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
UPI000852357D2.260e-1460.42chromodomain-helicase-DNA-binding protein Mi-2 hom... [more]
A0A7S1C3G3_9STRA2.390e-1436.13Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 165..185
NoneNo IPR availablePANTHERPTHR24102:SF28coord: 50..265
NoneNo IPR availablePANTHERPTHR24102PHD FINGER PROTEINcoord: 50..265
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 53..96
e-value: 9.1E-13
score: 58.4
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 50..190
e-value: 2.4E-20
score: 75.3
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 53..96
e-value: 9.7E-11
score: 41.4
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 51..98
score: 10.318
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 54..95
IPR017884SANT domainPROSITEPS51293SANTcoord: 1..28
score: 11.58
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 46..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig7975contigS-dermatodea_contig7975:1244..5087 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig7975.16166.1mRNA_S-dermatodea_contig7975.16166.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig7975 680..5460 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig7975.16166.1 ID=prot_S-dermatodea_contig7975.16166.1|Name=mRNA_S-dermatodea_contig7975.16166.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=489bp
MNEVKAEFPTKSHADVIEFYYNWKFHEPDYSRWQVTKRQIDIILTWPDFH
QEICEVCEEGGELLLCDTCSLAFHLHCLSPPLEEPPLNDWSCPKCLMNHH
TAESRAKAKLFVKQKILSIEAERRSMAEEEERRHERQVMYGYMGQASTGM
GHGSKRGAGGGATNVERTKEKAMAQQEAEAQAERELSNRVWGKEDLAHLQ
RAVEEFGECGWRAMMSDDKYKSLFYLRSLPIVKSMYRLQKDNDLKRAKSK
ARTAARADTKAKARAEGDVVKETRENTASIEADAAATAIALTHTEAHESV
DYPNEEGGGTGVISDKDRAREWRAMLQKSVLEHGVGEWAAKLKVPAYSRL
REIGCPSTLANHWRSMRHRLRRRLDRHRVAGKDARPLRASKGATLKGPVQ
WRGFAYGVNEAVPPSHAEMNAEMGEKAEATATEGGQGSTEGGERSERDKS
NEADGTSWPGEEDHVQIDDSDGDGGRSPKRARTQAVKL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR036427Bromodomain-like_sf
IPR019787Znf_PHD-finger
IPR019786Zinc_finger_PHD-type_CS
IPR017884SANT_dom
IPR011011Znf_FYVE_PHD