prot_S-dermatodea_contig1303.1833.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig1303.1833.1
Unique Nameprot_S-dermatodea_contig1303.1833.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length1413
Homology
BLAST of mRNA_S-dermatodea_contig1303.1833.1 vs. uniprot
Match: D8LQ54_ECTSI (Similar to leucine rich repeat containing 44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ54_ECTSI)

HSP 1 Score: 1167 bits (3020), Expect = 0.000e+0
Identity = 740/1493 (49.56%), Postives = 919/1493 (61.55%), Query Frame = 0
Query:    2 EWQAAGSLSTAPRLTYLTMFSNPICKRKMYRTFVTNCCECLRGLDLHAVSDEEVIDGLVFFEASRYRACSVGLAIPQPLFKGLTEATFSPIQEE-------------ITEIGNTLKERDANAVVATRPRA--FVLASISRRVGLLIKFHARNSPVIISQRRARILLRNKRCAXXXXXXXXXXRKRILRQRVVDDLTSILKQNGELYLVQEMMTPAQVRTLIWFQRRIVGRFRLKFVSNCAQTLNRFMGSMVQRFSAFVVCLERAQAGGVVVASDAAGELAAAVARASMVATAGLSWEEAAEKTATMVTPVPGCKLIRRFSYVDMPDWPILEEDITTDGVFVTRSAKGGGRVCTDLP-----QETSLSSDEAMHGLVRTLSDHRGHRTRSCLRTGIYGNPRVRECLISRRGAFVQRIYRRSPAMGRDALSTGALRSHEQLWVFRTENTRVLARVLCTLRHSPPGKRPVPCLLERHLFRCAAATRIQAAWRGHVLRWNLLETLVSCLIVGRAGICIQRWWRNMTGLRARLCLGRRLWALASTVFCPTMYMELDVYCTLVRGWRQPEGEDSVAFVFQDGLRVA---SVNYPPS--YPHENEVPYFGRGNLEGRPCGEPSAEGVAETPGIREFPIWARHRVVPHISPLEV-QGPILRQIGALLTEGVQAKRVVWPVAAATTDREIKSSVPGDLFE----AIVGRTCNHLGTSSK-------FTSGGSSE------------------ENGSPVDFEGHYGG-VDLLELTFSSTQEARARALLVVLATEESGVLPNRPAAQLMTLGMLRRAAAGEPGHASPTLSVPAKGYEKGDSVEVSVLRLIEGRCGSWFPGTIDQKIGNGTAYKVTLDNGWVEPQVPHNCLRPYDRMGKEMALVEMSHLPSRWRREARSVLTPADRLEMELLYRSL-TPTAEHGAVRSLLREDTHRHESLLTLSPCADVSSPEGIAVDELDRFNGLNGRVL-------LRPESPVLRME----SPPVPRWAGSHTMSTARKAGGLAAEALEKVATVVAAADEAVATSTWVPGNRFKRNLEKLVHLAAFESQNAAEERELTARREAVVRAKSVEHAEPTPRDRLERLKAAEVAIFRREADERRCKAVLNNALDRANRVANAAEAKECVRDTKELTDSCAKARRIKQIAESKQREDEVKYERDMSLEKRNVDVQIAKARAFTRRVSREKQALCRAESNTFTANASQLARHVGKYSTISSKANAVGNKRRWVKGQQRHKEEMRRRMLKRVQELQEMKSRNERSRQRRTLAARGRARAIMDEAVLSHRLGQPNLSGNDVFTDEVVQVLRPSSR---PDGQLAPPGNREEGGAKDSSGFGPW-RGEGGFRRGRQGSFRFARNAHDTAIATAPAAGAERLPSKPDGPQPRSHHKKNRRLQVNGDGKTVVVFASVPTVTTEARTK----------LLNPKSSHSILSSPLRRGQGGGGHPQIASPVPPDPTRLPWPLGRRCW 1412
            EW+A G L  AP+LTYLT+F NP+CKR+MYR F TNCCE LRGLDLHAVSDEEVI+   FF A RY  CS  LA+PQPLFKGLTE   +P Q+E              TE+   L E D +  +   P     +LAS+ RRV LL +FHARNSPVII QR+AR  L  +             R+ ++ +R V  L +IL++ GELYLVQEMMTP Q+R+L WFQRRI G FR K +  C +TL RF+G +  +FS FV  LE AQ GGVVV+ D +GELAAAVA+A MV T GLSW EA+E+TATMVT V  C+L+R FS+V+MPDWP+LE+D+ TDG+FV+RSA   G     LP        + ++     GL  T  D     +R   R G++G+PR++EC +SRR   V++  + S A  R A        ++QLW FR    R+LARVL TLR+   GK PVP +LER L RCA+ATRIQAAWRGHVLRW L +TL SC+IV RAG+CIQRWWR  TGL  RL L RRLWALAS V  PT+Y+ELDV+ TL+RGW+    ED VAF FQ G RVA   S + PPS     +      G     G      +A         RE P+W    +V  + P ++ QG +L Q+GAL+T  V+AK+V+WP+A ATTD   + +  GD+ +    + +G++     TSS+        TS  S E                  E G P+      G  V+LLELTFSS QEARARA+L+ LATEE GV+PNR  AQLMTLGMLRRAAAGE G A P L  PA+G+ +GD+VEVS+ RL EGR G+WFP  +D++ G  T YKVTL+ G+VE  VP   +RP D  G E ALVEMSH+PSRW+  ARS+LTPADRLE+ELL RSL T T    +V         R   LL+ +P  +  +   +A +EL RFNGL GR L       + P SPV R +     P  PRWAGS TM+ AR AGGLAA ALEKVA    AAD A ATSTWVPGNRF+  LEKLV +AA E+Q+AA+E EL+ARR+ V RA+  E  EP+PRDR+E+LKAAEVAIFRREADE   +A L  A+       NAAEA+E +RD K LT    KA    Q    K+RE +V+ ER  +L+KRN DV  AKAR   RR    KQ L RAESN FTANASQLARHV K++ +S +A      RRW KG +  +E+ RRRML+RVQELQE K R E ++ RR LAAR RAR  MDEAV+ HR+GQ    G+ V  + V+ VLRPS     P G+       E+    D S  G +  G+GG    R GS R  R  ++  I+++ A      PSKP+  +P    + +RRL+ N  GKTVVV ASVPTVT EAR            LL   SSHS++S      +  G  P   S    D T LPWPLGRRCW
Sbjct:  106 EWRAVGGLGKAPKLTYLTLFFNPVCKRRMYRPFTTNCCESLRGLDLHAVSDEEVIEESEFFRAGRYSTCSSALALPQPLFKGLTETASAPTQQEEQSSRPYLPSPQPTTEV---LAEGDGHMPLRGAPNRDDSILASVMRRVQLLRRFHARNSPVIIGQRQARRFLGERFGVAAAVKIQARIRRWMVERRAVAALKNILRETGELYLVQEMMTPTQLRSLAWFQRRIAGHFRFKALVTCVRTLERFVGKVSTKFSTFVDSLEHAQVGGVVVSHDQSGELAAAVAKALMVTTPGLSWIEASERTATMVTTVSDCRLLRPFSFVEMPDWPVLEKDVDTDGLFVSRSAACSGTRA-KLPGVGPYMLEASNTPPRTQGLRETRPD-----SRVPTRLGVFGSPRIQECKVSRRNCAVRKFCQGSAAAKRRATMNARRDVNKQLWAFRPLAVRLLARVLRTLRNESMGKPPVPFILERQLLRCASATRIQAAWRGHVLRWTLSDTLASCVIVSRAGVCIQRWWRYQTGLALRLRLCRRLWALASAVSSPTLYVELDVFYTLIRGWKWDGDEDGVAFSFQSGNRVAVMSSFSDPPSGALGSKGANDLAGHEKRRGLVVSHSAARDTDRH--TRELPLWTLKSIVRQVLPSKIRQGAVLTQVGALITVDVKAKKVIWPLAPATTDTS-EPAEGGDVGDITTSSALGQSNGTRETSSESSSTAICLTSARSGEVGSQTHPTRAVPQREDSAEAGPPISLRTKKGDDVELLELTFSSIQEARARAVLLALATEEPGVVPNRAVAQLMTLGMLRRAAAGEQGQALPILKTPAQGFRRGDAVEVSLFRLSEGRGGAWFPAVVDRRNGYSTTYKVTLETGYVEHHVPEGSMRPRDCTGVEPALVEMSHIPSRWQWNARSLLTPADRLELELLRRSLPTTTMTTPSVGE-------RPLELLSANPRREADAC--VAAEELRRFNGLGGRGLVLGDPRPISPGSPVGRADPRAMGPSPPRWAGSQTMAAARTAGGLAARALEKVARAAVAADAAAATSTWVPGNRFRVGLEKLVQMAAHEAQDAAKEVELSARRDTVSRARQTERIEPSPRDRVEKLKAAEVAIFRREADEINRRAALERAIHDHELKVNAAEAREYMRDGKRLTAESVKADLENQKCIIKKRESDVEEERQRNLDKRNADVDSAKARVAQRRKDHAKQELRRAESNAFTANASQLARHVRKHAAVSYRAQNTRGMRRWAKGNKNDEEDGRRRMLRRVQELQEQK-RKEGTKLRRVLAARSRARVAMDEAVVRHRVGQTVSMGDGVLAETVMHVLRPSGGAQGPKGEQVDVAMHED----DESRLGSFGTGDGGKDPRRVGSLRERRPDNNVTISSSMATRGGPYPSKPETTRPPLREQTSRRLRANDTGKTVVVLASVPTVTREARASRPLQGTGGAALLGSTSSHSMISP----NRDVGAAPNATS----DQTALPWPLGRRCW 1564          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1303.1833.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ54_ECTSI0.000e+049.56Similar to leucine rich repeat containing 44 n=2 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1187..1207
NoneNo IPR availableCOILSCoilCoilcoord: 1055..1075
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 2..69
e-value: 2.0E-5
score: 25.6
IPR000048IQ motif, EF-hand binding sitePROSITEPS50096IQcoord: 458..484
score: 7.986

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1303contigS-dermatodea_contig1303:6608..12236 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1303.1833.1mRNA_S-dermatodea_contig1303.1833.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig1303 6602..12236 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig1303.1833.1 ID=prot_S-dermatodea_contig1303.1833.1|Name=mRNA_S-dermatodea_contig1303.1833.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=1413bp
MEWQAAGSLSTAPRLTYLTMFSNPICKRKMYRTFVTNCCECLRGLDLHAV
SDEEVIDGLVFFEASRYRACSVGLAIPQPLFKGLTEATFSPIQEEITEIG
NTLKERDANAVVATRPRAFVLASISRRVGLLIKFHARNSPVIISQRRARI
LLRNKRCARAAVRIQACARKRILRQRVVDDLTSILKQNGELYLVQEMMTP
AQVRTLIWFQRRIVGRFRLKFVSNCAQTLNRFMGSMVQRFSAFVVCLERA
QAGGVVVASDAAGELAAAVARASMVATAGLSWEEAAEKTATMVTPVPGCK
LIRRFSYVDMPDWPILEEDITTDGVFVTRSAKGGGRVCTDLPQETSLSSD
EAMHGLVRTLSDHRGHRTRSCLRTGIYGNPRVRECLISRRGAFVQRIYRR
SPAMGRDALSTGALRSHEQLWVFRTENTRVLARVLCTLRHSPPGKRPVPC
LLERHLFRCAAATRIQAAWRGHVLRWNLLETLVSCLIVGRAGICIQRWWR
NMTGLRARLCLGRRLWALASTVFCPTMYMELDVYCTLVRGWRQPEGEDSV
AFVFQDGLRVASVNYPPSYPHENEVPYFGRGNLEGRPCGEPSAEGVAETP
GIREFPIWARHRVVPHISPLEVQGPILRQIGALLTEGVQAKRVVWPVAAA
TTDREIKSSVPGDLFEAIVGRTCNHLGTSSKFTSGGSSEENGSPVDFEGH
YGGVDLLELTFSSTQEARARALLVVLATEESGVLPNRPAAQLMTLGMLRR
AAAGEPGHASPTLSVPAKGYEKGDSVEVSVLRLIEGRCGSWFPGTIDQKI
GNGTAYKVTLDNGWVEPQVPHNCLRPYDRMGKEMALVEMSHLPSRWRREA
RSVLTPADRLEMELLYRSLTPTAEHGAVRSLLREDTHRHESLLTLSPCAD
VSSPEGIAVDELDRFNGLNGRVLLRPESPVLRMESPPVPRWAGSHTMSTA
RKAGGLAAEALEKVATVVAAADEAVATSTWVPGNRFKRNLEKLVHLAAFE
SQNAAEERELTARREAVVRAKSVEHAEPTPRDRLERLKAAEVAIFRREAD
ERRCKAVLNNALDRANRVANAAEAKECVRDTKELTDSCAKARRIKQIAES
KQREDEVKYERDMSLEKRNVDVQIAKARAFTRRVSREKQALCRAESNTFT
ANASQLARHVGKYSTISSKANAVGNKRRWVKGQQRHKEEMRRRMLKRVQE
LQEMKSRNERSRQRRTLAARGRARAIMDEAVLSHRLGQPNLSGNDVFTDE
VVQVLRPSSRPDGQLAPPGNREEGGAKDSSGFGPWRGEGGFRRGRQGSFR
FARNAHDTAIATAPAAGAERLPSKPDGPQPRSHHKKNRRLQVNGDGKTVV
VFASVPTVTTEARTKLLNPKSSHSILSSPLRRGQGGGGHPQIASPVPPDP
TRLPWPLGRRCW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR000048IQ_motif_EF-hand-BS