prot_S-dermatodea_contig1282.1724.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig1282.1724.1
Unique Nameprot_S-dermatodea_contig1282.1724.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length379
Homology
BLAST of mRNA_S-dermatodea_contig1282.1724.1 vs. uniprot
Match: D8LK53_ECTSI (HTH La-type RNA-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK53_ECTSI)

HSP 1 Score: 300 bits (767), Expect = 6.820e-96
Identity = 205/350 (58.57%), Postives = 230/350 (65.71%), Query Frame = 0
Query:    7 SGGHTKPSSSTPVKWTLVEAEPETPEGRRTKQQGYGRARAHGGAGXXXXAGNWRSGRDAGRXXXXXXFSGG-HRGNRRGGXXXXXXXTRHNQGXXXXXXXXXXXXXXXXXXXXXYVG-ATYYPSPQNFNEPNFEEQRSYMTNLAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVDLQDISAGILASDMLQVDTENETMRMKEGWEVWLLPNQATGKQGVPRYIKVDPAAVSEDPAAATFDGALEQGTGDGKAETEGAPKADETNALAPQDDAVPPAKEDSAETTTASAEAVAEDTTEAGPASENGALVDGKTELTPTAPAWTPGGDAKANAVEEQ 354
            S G+ KPS+STPVKWTLVEA  ETPEGRR K Q +   R   GA      GNW  GRD   XXXXXX     +RG RRGG       +R+NQG XXXXXXXX            YVG ATYYP+  N    +FEEQ++YMTNLAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGV+L+DI+AGILASD LQVDTENETMRM+EGWEVWLLPNQATGKQGVPRYIKVDPA    D    T    +   T    A     P A++T     +D      K++    T   AE   + ++E G  S   A    KTELTP APAWTP G A  +AV+EQ
Sbjct:    5 SSGNAKPSASTPVKWTLVEAVAETPEGRRHKHQSHAGQRKGPGARGSGYTGNWGQGRDGXXXXXXXXXXXXXNRGQRRGGGAG----SRNNQGQXXXXXXXXG-----------YVGGATYYPTQANVGAESFEEQKAYMTNLAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDITAGILASDTLQVDTENETMRMREGWEVWLLPNQATGKQGVPRYIKVDPAVSEADRVNGTEPSGIPAQTTQDAASAGDVPGAEDTQTSLKEDSTAGAEKKEGDSVTGPVAEEEQQRSSEKGQVSHEDAA---KTELTPLAPAWTPVG-ASTDAVQEQ 335          
BLAST of mRNA_S-dermatodea_contig1282.1724.1 vs. uniprot
Match: A0A836CAE4_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAE4_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.880e-34
Identity = 71/138 (51.45%), Postives = 93/138 (67.39%), Query Frame = 0
Query:  139 EQRSYMTNLAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVDLQDISAGILASDMLQVDTENETMRMKEGWEVWLLPNQATGKQGVPRYIKVDP--------------AAVSEDPAA-ATFDGA 261
            E +      AV+Q+E+YF+V NLC D+FMRSYMD EGYIP+AFVANFPG A  G +  DI   + +S+ML+ D  NETMR++EGW++W+LPN A+G  GVPRYIK+                AA SE+P+A AT +GA
Sbjct:    5 EAKKMAAEYAVKQMEWYFSVHNLCSDVFMRSYMDTEGYIPVAFVANFPGCASLGAEFTDILEALKSSEMLEFDEANETMRLREGWDMWILPN-ASGGLGVPRYIKLSEDEAAKIAAQQEAQAAAKSEEPSAEATMNGA 141          
BLAST of mRNA_S-dermatodea_contig1282.1724.1 vs. uniprot
Match: A0A7S1UC17_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UC17_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.610e-25
Identity = 53/110 (48.18%), Postives = 74/110 (67.27%), Query Frame = 0
Query:  135 PNFEEQRSYMTNLAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVDLQDISAGILASDMLQVDTENETMRMKEGWEVWLLPNQATGKQGVPRYIKV 244
            P   E R      AVR IE  F+  +LC D ++R  MD EGYIP+AFVAN+P VA++G   +D+ +GI +S++L++D ENETMR++E W+ WL P+   G  G PRY+KV
Sbjct:   72 PARHENRHLFAASAVRAIEMTFSPNHLCTDEWLRQNMDVEGYIPVAFVANYPHVAQYGALYEDLLSGIASSEILELDAENETMRLRENWQQWLFPD-GKGGMGCPRYVKV 180          
BLAST of mRNA_S-dermatodea_contig1282.1724.1 vs. uniprot
Match: K8ZBX0_NANGC (Rna-binding la domain protein (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8ZBX0_NANGC)

HSP 1 Score: 112 bits (281), Expect = 4.260e-25
Identity = 58/139 (41.73%), Postives = 83/139 (59.71%), Query Frame = 0
Query:  123 ATYYPSPQNFNEP--------------NFEEQRSYMTNLAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVDLQDISAGIL-ASDMLQVDTENETMRMKEGWEVWLLPNQATGKQGVPRYIKVDP 246
              Y+P PQ    P              N  E R Y+ ++AV+QIE+YF+V+NLCRD ++R+++DEEG++P+A + NFP VA F  D  +I   +  AS +L+ D  NET+R+KE    WLLPN   G  G PR++K  P
Sbjct:   24 GVYFPQPQPQYLPAHIGTAVRSSLMTMNALEAREYLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPN-GRGGMGCPRWLKQAP 161          
BLAST of mRNA_S-dermatodea_contig1282.1724.1 vs. uniprot
Match: A0A7R9U3W9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3W9_9STRA)

HSP 1 Score: 115 bits (287), Expect = 4.800e-25
Identity = 56/127 (44.09%), Postives = 81/127 (63.78%), Query Frame = 0
Query:  135 PNFEEQRSYMTNLAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVDLQDISAGILASDMLQVDTENETMRMKEGWEVWLLPNQATGKQGVPRYIKVDPAA-VSEDPAAATFDG 260
            P   E R+ +   AVR IE  F+  +LC D F+R +MD  GY+P+A VAN+  VA++G   +D+ AG+  S++LQ+D ENET+R++E WE WL P+   G  G PRY+KV P     +D + +T DG
Sbjct:  220 PASNENRTMLAASAVRAIEMTFSPNHLCTDEFLRQHMDVAGYVPVALVANYSHVAQYGALYEDLLAGLANSELLQLDAENETVRLRENWEQWLFPD-GKGGMGCPRYVKVSPVPPTDQDASGSTADG 345          
BLAST of mRNA_S-dermatodea_contig1282.1724.1 vs. uniprot
Match: A0A4D9CXU2_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXU2_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.390e-23
Identity = 59/146 (40.41%), Postives = 85/146 (58.22%), Query Frame = 0
Query:  123 ATYYPSPQNFNEP--------------NFEEQRSYMTNLAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVDLQDISAGIL-ASDMLQVDTENETMRMKEGWEVWLLPNQATGKQGVPRYIKVDPAAVSEDP 253
              Y+P PQ    P              N  E R Y+ ++AV+QIE+YF+V+NLCRD ++R+++DEEG++P+AF+ NFP VA F  D  +I   +   S +L+ D  NET+R+KE    WLLPN   G  G PR++K  P    + P
Sbjct:  266 GVYFPRPQPQYLPAHIGTAVRSSLMTMNALEAREYLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLAFICNFPTVASFAADYLEIVKTLQEVSSVLEYDEANETLRLKEKATAWLLPN-GRGGVGCPRWLKQAPDTPPQQP 410          
BLAST of mRNA_S-dermatodea_contig1282.1724.1 vs. uniprot
Match: A0A2P4X4J6_9STRA (La domain family n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X4J6_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.320e-22
Identity = 51/107 (47.66%), Postives = 73/107 (68.22%), Query Frame = 0
Query:  148 AVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVDLQDISAGILASDMLQVDTENETMRMKEGWEVWLLPNQATGKQGVPRYIKVDPAAVSEDPA 254
            A  QIEFYFT +NL RDIF+R +MD +GY+P+AFV +F  V     D + +   +  S+ +++D +NE +R++EGW+ W+ PN A G  GVPRYIKV   A +E+PA
Sbjct:  121 AKNQIEFYFTSDNLVRDIFLRQHMDVDGYVPLAFVGSFQAVYSVHQDYESLLEAMKNSETIELDEQNEKIRLREGWQKWVWPN-AEGGYGVPRYIKV---AENEEPA 223          
BLAST of mRNA_S-dermatodea_contig1282.1724.1 vs. uniprot
Match: V9E4H7_PHYPR (HTH La-type RNA-binding domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=V9E4H7_PHYPR)

HSP 1 Score: 103 bits (257), Expect = 4.200e-22
Identity = 51/125 (40.80%), Postives = 73/125 (58.40%), Query Frame = 0
Query:  120 YVGATYYPSPQNFNEPNFEEQRSYMTNLAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVDLQDISAGILASDMLQVDTENETMRMKEGWEVWLLPNQATGKQGVPRYIKV 244
            YV   Y P+P                  A  QIEFYFT +NL RDIF+R +MD +GY+P+AFV +F  V     D + +   +  S+ +++D +NE +R+++GWE W+ PN A G  GVPRYIK+
Sbjct:  110 YVNGVYVPTPDV----------KVTAQWAKNQIEFYFTSDNLVRDIFLRQHMDVDGYVPLAFVGSFQAVYSVHQDYESLLEAMKNSETVELDEQNEKIRLRDGWEKWVWPN-AVGGYGVPRYIKL 223          
BLAST of mRNA_S-dermatodea_contig1282.1724.1 vs. uniprot
Match: A0A225VMU3_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VMU3_9STRA)

HSP 1 Score: 102 bits (254), Expect = 8.910e-22
Identity = 47/104 (45.19%), Postives = 69/104 (66.35%), Query Frame = 0
Query:  148 AVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVDLQDISAGILASDMLQVDTENETMRMKEGWEVWLLPNQATGKQGVPRYIKVDPAAVSE 251
            A  QIEFYFT +NL RDIF+R +MD +G++P+AFV +F  V     D + +   +  SD +++D +NE +R++EGW+ W+ PN A G  GVPRYIK++     E
Sbjct:  121 AKNQIEFYFTSDNLVRDIFLRQHMDVDGFVPLAFVGSFQAVYSVHQDYESLLEAMKHSDSVELDEQNEKIRLREGWQKWVWPN-AEGGYGVPRYIKLENETADE 223          
BLAST of mRNA_S-dermatodea_contig1282.1724.1 vs. uniprot
Match: H3GP14_PHYRM (HTH La-type RNA-binding domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GP14_PHYRM)

HSP 1 Score: 102 bits (254), Expect = 9.110e-22
Identity = 50/109 (45.87%), Postives = 73/109 (66.97%), Query Frame = 0
Query:  148 AVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVDLQDISAGILASDMLQVDTENETMRMKEGWEVWLLPNQATGKQGVPRYIKVDPAAVSEDPAAA 256
            A  QIEFYFT +NL RDIF+R +MD +G++P+AFV +F  V     D + +   +  SD +++D +NE +R+++GW+ W+ PN A G  GVPRYIK+   A +E PA A
Sbjct:  122 AKNQIEFYFTNDNLVRDIFLRQHMDVDGFVPLAFVGSFQAVYSVHQDYESLLEAMKNSDTMELDEQNEKIRLRQGWQTWVWPN-ADGGYGVPRYIKL---AENETPAEA 226          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1282.1724.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK53_ECTSI6.820e-9658.57HTH La-type RNA-binding domain-containing protein ... [more]
A0A836CAE4_9STRA1.880e-3451.45HTH La-type RNA-binding domain-containing protein ... [more]
A0A7S1UC17_9STRA2.610e-2548.18Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
K8ZBX0_NANGC4.260e-2541.73Rna-binding la domain protein (Fragment) n=2 Tax=N... [more]
A0A7R9U3W9_9STRA4.800e-2544.09Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A4D9CXU2_9STRA1.390e-2340.41HTH La-type RNA-binding domain-containing protein ... [more]
A0A2P4X4J6_9STRA1.320e-2247.66La domain family n=1 Tax=Phytophthora palmivora va... [more]
V9E4H7_PHYPR4.200e-2240.80HTH La-type RNA-binding domain-containing protein ... [more]
A0A225VMU3_9STRA8.910e-2245.19HTH La-type RNA-binding domain-containing protein ... [more]
H3GP14_PHYRM9.110e-2245.87HTH La-type RNA-binding domain-containing protein ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006630La-type HTH domainSMARTSM00715lacoord: 142..220
e-value: 3.1E-13
score: 60.0
IPR006630La-type HTH domainPFAMPF05383Lacoord: 149..198
e-value: 1.7E-14
score: 53.6
IPR006630La-type HTH domainPROSITEPS50961HTH_LAcoord: 138..229
score: 18.862
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 133..226
e-value: 9.4E-20
score: 72.0
NoneNo IPR availablePANTHERPTHR22792:SF76LARP (RNA BINDING LA RELATED PROTEIN) HOMOLOGcoord: 30..324
NoneNo IPR availablePANTHERPTHR22792LUPUS LA PROTEIN-RELATEDcoord: 30..324
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 142..229

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1282contigS-dermatodea_contig1282:3913..6797 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1282.1724.1mRNA_S-dermatodea_contig1282.1724.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig1282 3913..6797 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig1282.1724.1 ID=prot_S-dermatodea_contig1282.1724.1|Name=mRNA_S-dermatodea_contig1282.1724.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=379bp
MASQGASGGHTKPSSSTPVKWTLVEAEPETPEGRRTKQQGYGRARAHGGA
GGSGSAGNWRSGRDAGRGRGGQGFSGGHRGNRRGGGGGGSGGTRHNQGQG
RGRGYAYGGSGGGGGGGGGYVGATYYPSPQNFNEPNFEEQRSYMTNLAVR
QIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVDLQDISA
GILASDMLQVDTENETMRMKEGWEVWLLPNQATGKQGVPRYIKVDPAAVS
EDPAAATFDGALEQGTGDGKAETEGAPKADETNALAPQDDAVPPAKEDSA
ETTTASAEAVAEDTTEAGPASENGALVDGKTELTPTAPAWTPGGDAKANA
VEEQPSASESSPAVGPPGNEAGCSPSGTD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006630La_HTH
IPR036388WH-like_DNA-bd_sf
IPR036390WH_DNA-bd_sf