prot_S-dermatodea_contig12412.1509.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig12412.1509.1
Unique Nameprot_S-dermatodea_contig12412.1509.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length220
Homology
BLAST of mRNA_S-dermatodea_contig12412.1509.1 vs. uniprot
Match: D7FNT2_ECTSI (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNT2_ECTSI)

HSP 1 Score: 325 bits (834), Expect = 8.650e-104
Identity = 164/221 (74.21%), Postives = 192/221 (86.88%), Query Frame = 0
Query:    1 MLTGATMYALAIGAVSHIITTVVARHSQSRRIERHAEVFVRMHSLPQDLASEIMRTLNISGETEEMVERRAQHTLELLPSSIRTTTLLCIYRPQIARIPFLRNRRDLYPAFVTLVVRSLQTHVYPKAGEEVIMEDSSAQDVIFLVHGRAVITRRGVEVGIMSTGSCFGAAAALQNGP-RRESVTCATDCEMYTIGGKALKQIARTFPGPIEELRAESERPL 220
            MLTGATMYALAIGAVSHIITTVVARHSQSRRIERHAE F+RMHSLPQ LASEIMRTLNISGET +M+E++AQ+TLELLPSS+RT+TLLCIYR QIARI F ++R+D+ P FVT V+RS+  H+YPKAGE V++E+  + + IF+V GRA +TRRGVEVG +S GSCFGA AAL  G  RRESVTC T+CEMYTI GKAL++IAR FPGP+ EL+AESERPL
Sbjct:  400 MLTGATMYALAIGAVSHIITTVVARHSQSRRIERHAEAFIRMHSLPQYLASEIMRTLNISGETHQMLEKKAQNTLELLPSSVRTSTLLCIYRRQIARIQFFKDRKDVCPVFVTSVMRSMHDHIYPKAGERVLLEEGVSDETIFVVRGRATVTRRGVEVGRLSAGSCFGATAALHGGGVRRESVTCVTECEMYTIEGKALRRIARAFPGPMSELKAESERPL 620          
BLAST of mRNA_S-dermatodea_contig12412.1509.1 vs. uniprot
Match: A0A835YVA8_9STRA (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVA8_9STRA)

HSP 1 Score: 109 bits (272), Expect = 6.730e-24
Identity = 72/240 (30.00%), Postives = 119/240 (49.58%), Query Frame = 0
Query:    1 MLTGATMYALAIGAVSHIITTVVARHSQSRRIERHAEVFVRMHSLPQDLASEIMRTLNISGETEEMVERRAQHTLELLPSSIRTTTLLCIYRPQIARIPFLRNRRDLYPAFVTLVVRSLQTHVYPKAGEEVIMEDSSAQDVIFLVHGRAVITRRGVEVGIMSTGSCFGAAAALQN------------------------GPRRESVTCATDCEMYTIGGKALKQIARTFPGPIEELRAES 216
            ML+GA + ALAI +VSHI+ +VVA  +++ +I  HAE F+  HSLP +LA ++ RTLN+SGETE   E+ AQ                      I+++ FLR+ R ++P FVT     L      + GE + +E + ++D+ FL+ G  V+T  G  +  ++    F  A +++                          PR  + T  T CE+ TI  + ++++ R FP  +  L+ ++
Sbjct:  298 MLSGAVLSALAIASVSHIVASVVASRTRAHKICEHAETFIWRHSLPPNLAKQVRRTLNLSGETEAAQEQHAQ----------------------ISKVAFLRDNRHMHPVFVTTFASLLHMRHVARGGEVLYVEGALSRDMWFLIKGTVVLTMAGQLLREVTAEGHFDDADSIKRLLISPRPQKXXXXXXXXXXXXINLTPRTATATAVTPCELATITTEDVQKLLRLFPNLMAPLKRQA 515          
BLAST of mRNA_S-dermatodea_contig12412.1509.1 vs. uniprot
Match: F0XYE9_AURAN (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYE9_AURAN)

HSP 1 Score: 93.6 bits (231), Expect = 2.230e-18
Identity = 61/219 (27.85%), Postives = 107/219 (48.86%), Query Frame = 0
Query:    1 MLTGATMYALAIGAVSHIITTVVARHSQSRRIERHAEVFVRMHSLPQDLASEIMRTLN--ISGETEEMVERRAQHTLELLPSSIRTTTLLCIYRPQIARIPFLRNRRDLYPAFVTLVVRSLQTHVYPKAGEEVIMEDSSAQDVIFLVHGRAVITRRGVEVGIMSTGSCFGAAAALQNGPRRESVTCATDCEMYTIGGKALKQIARTFPGPIEELRAESE 217
            MLTG + YA  +   S I+ T     ++ R        F+R + LP DL+ +++R  N   S  T +M        L+++P ++R   +L + R  IA+IPFL N+   + A + ++++         AGE VI E + A ++ FLV G+AV+  +G +V   + GS FG    ++   R  S+      E+ T+   +L  +   +P   +EL   ++
Sbjct:  426 MLTGVSWYAYIVSTTSSIMATFEWESNRIRERMLKVSGFLRENKLPDDLSRQMVRFYNHFYSSNTWKMASYDGSELLQVMPPTLRCDVILYVERDLIAKIPFLDNKCGAFIADLVVMLQPCSV----SAGEYVIREGTIANEMFFLVKGKAVVLAKGAKVHAFNAGSYFGEVGCIRGAVRTASIKAIMRSELQTLHKSSLLSLIEEYPDTRDELNITAD 640          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12412.1509.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FNT2_ECTSI8.650e-10474.21Cyclic nucleotide-binding domain-containing protei... [more]
A0A835YVA8_9STRA6.730e-2430.00Cyclic nucleotide-binding domain-containing protei... [more]
F0XYE9_AURAN2.230e-1827.85Cyclic nucleotide-binding domain-containing protei... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000595Cyclic nucleotide-binding domainSMARTSM00100cnmp_10coord: 105..217
e-value: 0.0045
score: 26.2
IPR000595Cyclic nucleotide-binding domainPFAMPF00027cNMP_bindingcoord: 126..203
e-value: 1.3E-10
score: 41.2
IPR000595Cyclic nucleotide-binding domainPROSITEPS50042CNMP_BINDING_3coord: 103..201
score: 15.918
IPR014710RmlC-like jelly roll foldGENE3D2.60.120.10coord: 69..218
e-value: 6.7E-20
score: 73.4
NoneNo IPR availablePANTHERPTHR47823FAMILY NOT NAMEDcoord: 1..214
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 25..220
IPR018490Cyclic nucleotide-binding-likeSUPERFAMILY51206cAMP-binding domain-likecoord: 28..207

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12412contigS-dermatodea_contig12412:1078..6939 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12412.1509.1mRNA_S-dermatodea_contig12412.1509.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig12412 1078..6948 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig12412.1509.1 ID=prot_S-dermatodea_contig12412.1509.1|Name=mRNA_S-dermatodea_contig12412.1509.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=220bp
MLTGATMYALAIGAVSHIITTVVARHSQSRRIERHAEVFVRMHSLPQDLA
SEIMRTLNISGETEEMVERRAQHTLELLPSSIRTTTLLCIYRPQIARIPF
LRNRRDLYPAFVTLVVRSLQTHVYPKAGEEVIMEDSSAQDVIFLVHGRAV
ITRRGVEVGIMSTGSCFGAAAALQNGPRRESVTCATDCEMYTIGGKALKQ
IARTFPGPIEELRAESERPL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000595cNMP-bd_dom
IPR014710RmlC-like_jellyroll
IPR018490cNMP-bd-like