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Homology
BLAST of mRNA_S-dermatodea_contig1211.1315.1 vs. uniprot
Match: D7G0M5_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M5_ECTSI) HSP 1 Score: 87.4 bits (215), Expect = 6.660e-14 Identity = 49/98 (50.00%), Postives = 65/98 (66.33%), Query Frame = 0
Query: 51 SKEEHAAFMRSRRAIDTVRSVPHEDWPGVLRVLDAAEIEEWRSTQRGGGQDEGEGGRAAVNDRVYNMCISRMAKSFRWGEALDILARMASLGAAPNVY 148
S++ A+F R++ A+D + +V +DW +L LD AE+ E R+T + + AAV+ VY+ CISRMAK FRWGEALDILARMA LGA PN Y
Sbjct: 69 SRDGRASF-RTKLALDKIDAVRKDDWRRILVELDKAELAEGRATT-----NNAKAPAAAVSTFVYSKCISRMAKCFRWGEALDILARMAELGAMPNSY 160
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR033443 | Pentacotripeptide-repeat region of PRORP | PFAM | PF17177 | PPR_long | coord: 652..728
e-value: 1.6E-6
score: 27.6
coord: 152..285
e-value: 1.6E-11
score: 44.0 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF01535 | PPR | coord: 740..769
e-value: 0.13
score: 12.6
coord: 114..142
e-value: 1.1
score: 9.6 |
| IPR002885 | Pentatricopeptide repeat | TIGRFAM | TIGR00756 | TIGR00756 | coord: 775..808
e-value: 1.4E-7
score: 29.2
coord: 218..251
e-value: 8.4E-5
score: 20.5
coord: 461..488
e-value: 1.5E-4
score: 19.7
coord: 323..357
e-value: 1.3E-8
score: 32.5
coord: 569..600
e-value: 2.1E-4
score: 19.2
coord: 149..181
e-value: 7.9E-4
score: 17.4
coord: 672..704
e-value: 1.6E-7
score: 29.1
coord: 254..287
e-value: 9.8E-4
score: 17.1
coord: 497..531
e-value: 4.6E-5
score: 21.3
coord: 638..671
e-value: 9.1E-5
score: 20.4
coord: 183..215
e-value: 7.0E-6
score: 23.9
coord: 358..391
e-value: 4.6E-6
score: 24.5
coord: 393..420
e-value: 1.6E-5
score: 22.8 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13041 | PPR_2 | coord: 320..367
e-value: 5.8E-13
score: 48.8
coord: 494..542
e-value: 1.8E-7
score: 31.2
coord: 772..818
e-value: 1.8E-8
score: 34.4 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13812 | PPR_3 | coord: 553..613
e-value: 3.8E-7
score: 30.1 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF12854 | PPR_1 | coord: 387..418
e-value: 1.5E-6
score: 27.8
coord: 455..485
e-value: 4.9E-7
score: 29.3 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 530..564
score: 10.358 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 321..355
score: 12.858 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 181..215
score: 11.74 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 565..599
score: 10.008 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 670..704
score: 12.101 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 772..806
score: 11.213 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 286..320
score: 10.315 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 600..634
score: 8.988 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 391..425
score: 11.224 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 737..771
score: 10.084 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 251..285
score: 9.865 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 216..250
score: 10.084 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 807..833
score: 6.95 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 356..390
score: 11.488 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 495..529
score: 11.575 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 111..145
score: 8.813 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 459..489
score: 9.865 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 635..669
score: 10.03 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 705..735
score: 6.708 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 146..180
score: 9.745 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 246..348
e-value: 1.3E-22
score: 82.2
coord: 628..700
e-value: 8.9E-15
score: 56.6 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 718..830
e-value: 3.0E-26
score: 93.8 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 492..627
e-value: 7.5E-34
score: 119.5
coord: 349..491
e-value: 6.3E-41
score: 142.7 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 100..245
e-value: 5.5E-32
score: 113.5 |
| None | No IPR available | PANTHER | PTHR46128 | FAMILY NOT NAMED | coord: 113..230
coord: 682..833
coord: 349..487
coord: 231..356
coord: 482..669
coord: 650..742 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_S-dermatodea_contig1211.1315.1 ID=prot_S-dermatodea_contig1211.1315.1|Name=mRNA_S-dermatodea_contig1211.1315.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=833bp
ASTVEDSSGSGIRSGSGSRSNGSGSSGSSSSRPANVRRSGGRGRGGGGGR
SKEEHAAFMRSRRAIDTVRSVPHEDWPGVLRVLDAAEIEEWRSTQRGGGQ
DEGEGGRAAVNDRVYNMCISRMAKSFRWGEALDILARMASLGAAPNVYVV
NAALDACGRTGRIEEALELIRDARGSGLALDAISYNCAIPACNRDGRWET
AIEMLRGMQQDGIEPIAVTYMAVMKVCRDSARWTEAIGLLREMREAGVEP
SANTYSAVLTACRNAGEWKEGVAILEEMAGWRVPPNVVNYNLVISACADA
RQAGQALALLAAMRPSGVEPDVVTYNTAIAACAKAGEWEKAVNTLHNMAE
MGVKPDVISFTSAIKACGRGEQWEKAVALLREMGEAGVPPNPISYNCAIA
ACATAGRSDEALELFEEMATVGVNRGLTSYNCAISACATRGERAQVLLRE
MPLAGVQPDVVSYNSVIAALGNSGNPDEAVGLLRELQASPTLFPDVITYN
SAISARGRAGQWRQSLELLREIEEVGLKPDAISYTAALSALAPWGRCDEA
EALLREIPTKGIRPHAVFYSAAINVCGYAGEAERAMTLLREMPSKGLKPT
QFCYSAAISATGKAGQWEVSLALLRELPLEGLRPNDFCFNAAVTACGIGG
QWEEAMSVFKQSRMEGIVPTEVSYTALIDACGNCGEVEVALSLLQQMLDE
GLPPRARAYEAAIAACGNGGQWERGVQLLHEMPVAADEPCFTAAIRACGD
NAQYQQALALLEEMRGLGLEPMVSTYTACITACGKSGKVDEALALLDEMS
QVGTPPDTGSYSAAIMACQKAGEGHRAVALLEE back to top
Annotated Terms
The following terms have been associated with this polypeptide:
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