prot_S-dermatodea_contig11803.1145.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig11803.1145.1
Unique Nameprot_S-dermatodea_contig11803.1145.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length135
Homology
BLAST of mRNA_S-dermatodea_contig11803.1145.1 vs. uniprot
Match: D7G2P6_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2P6_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 1.470e-60
Identity = 94/136 (69.12%), Postives = 114/136 (83.82%), Query Frame = 0
Query:    1 MQAMFDPPPPLEFKKGISKRKPPQVQGVAALFATN--ADIFENGPPPPKQIYETPRQRHARIAAAKKKSDEDGLTEMVSKWDPKDDKKATSDAYKTLFVAKISYDTTEKKLRREFEQYGPINNLRMVNDDDGKPRG 134
            M+AMF+PPPPLEFKK + KRKPP V+GVAA+      A++FE G PPP + +ETPRQ+HARIAAAKKK+DE+GL + +SKW+PKDD K   DAYKTLF+AKISYDTTEKKLRREFEQ+G I ++RMV D+DGKPRG
Sbjct:   27 MRAMFEPPPPLEFKKSVCKRKPPTVEGVAAMLKGKGAANLFEKGVPPPPEKFETPRQKHARIAAAKKKTDEEGLKDKISKWNPKDDPKTKGDAYKTLFIAKISYDTTEKKLRREFEQFGRIQSIRMVQDEDGKPRG 162          
BLAST of mRNA_S-dermatodea_contig11803.1145.1 vs. uniprot
Match: A0A7S2Y0A0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0A0_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.840e-40
Identity = 73/134 (54.48%), Postives = 96/134 (71.64%), Query Frame = 0
Query:    1 MQAMFDPPPPLEFKKGISKRKPPQVQGVAALFATNADIFENGPPPPKQIYETPRQRHARIAAAKKKSDEDGLTEMVSKWDPKDDKKATSDAYKTLFVAKISYDTTEKKLRREFEQYGPINNLRMVNDDDGKPRG 134
            ++AMFDP PP+E K  I KRK P + G+A+      D+FE   PPP+QIYETP+QR AR+  A  K++ + L     ++DP  +  AT DAYKTLF++++SYDTTEKKLRREFEQYGPI NLR++ D + KPRG
Sbjct:   28 LKAMFDPRPPMEHKPPIIKRKMPSLAGMASYV----DLFEKTEPPPRQIYETPKQRQARVRDATMKANNEALALYAQEFDPHLNPHATEDAYKTLFISRLSYDTTEKKLRREFEQYGPIRNLRIILDLNDKPRG 157          
BLAST of mRNA_S-dermatodea_contig11803.1145.1 vs. uniprot
Match: H6WBA2_VAULI (RRM domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA2_VAULI)

HSP 1 Score: 142 bits (358), Expect = 5.250e-39
Identity = 73/134 (54.48%), Postives = 92/134 (68.66%), Query Frame = 0
Query:    1 MQAMFDPPPPLEFKKGISKRKPPQVQGVAALFATNADIFENGPPPPKQIYETPRQRHARIAAAKKKSDEDGLTEMVSKWDPKDDKKATSDAYKTLFVAKISYDTTEKKLRREFEQYGPINNLRMVNDDDGKPRG 134
            ++ MFDP PPL +K  I+KR  P V G+        D+FE  PPPP   YETP+QRHAR+  AK + +E  +   + KW+PK D  AT DAYKTLFVA +SYDT+EKKLRREFEQYG I  +R+VND + +PRG
Sbjct:   28 LKPMFDPRPPLLWKPPINKRVAPYVTGLVKY----KDVFEKIPPPPIIPYETPKQRHARLREAKIRENEAKIEREIKKWNPKKDPNATGDAYKTLFVANMSYDTSEKKLRREFEQYGQIKKIRLVNDLEDQPRG 157          
BLAST of mRNA_S-dermatodea_contig11803.1145.1 vs. uniprot
Match: A0A7S2B852_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B852_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.020e-37
Identity = 72/135 (53.33%), Postives = 97/135 (71.85%), Query Frame = 0
Query:    1 MQAMFDPPPPLEFKKGISKRKPPQVQGVAALFATNADIFENGPPPPKQIYETPRQRHARIAAAKKKSDEDGLTEMVSKWDP-KDDK--KATSDAYKTLFVAKISYDTTEKKLRREFEQYGPINNLRMVNDDDGKP 132
            M+AMF+P  P+E+K  I KR+ P   G+AA F T  D+FE   P P+  +ETP  R AR+ AA +K++ +    +++ WDP K +K  K TSDAYKTLFVA++SYDTTEKKLRREFEQ+GPI  LR+V+D+D +P
Sbjct:    8 MKAMFEPSAPIEYKPAIVKRRMPPYTGMAA-FVT--DVFETTKPEPRGTFETPHMRQARVKAATEKANAEKCELLLADWDPNKPEKPDKVTSDAYKTLFVARLSYDTTEKKLRREFEQFGPIKMLRLVHDEDERP 139          
BLAST of mRNA_S-dermatodea_contig11803.1145.1 vs. uniprot
Match: A0A813CET9_9DINO (RNU1 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CET9_9DINO)

HSP 1 Score: 127 bits (318), Expect = 5.640e-34
Identity = 63/128 (49.22%), Postives = 85/128 (66.41%), Query Frame = 0
Query:    7 PPPPLEFKKGISKRKPPQVQGVAALFATNADIFENGPPPPKQIYETPRQRHARIAAAKKKSDEDGLTEMVSKWDPKDDKKATSDAYKTLFVAKISYDTTEKKLRREFEQYGPINNLRMVNDDDGKPRG 134
            PPPPL FK+ I K  P +V G+AA      D  E GPPPP++  ETP QR  R+AAA   ++E+ +      W+PK+D+KAT DAY TLFV++++Y+T E KLR E E  GP+N +R+V D +GK RG
Sbjct:    1 PPPPLVFKEPIFKSGPRKVDGIAAWL----DKLEQGPPPPREFSETPLQRKKRLAAAAIAANEEKVAAEAESWNPKEDEKATKDAYNTLFVSRLAYETDESKLRSEMESVGPVNTVRIVRDTEGKSRG 124          
BLAST of mRNA_S-dermatodea_contig11803.1145.1 vs. uniprot
Match: A0A8K1CMI4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMI4_PYTOL)

HSP 1 Score: 129 bits (323), Expect = 1.120e-33
Identity = 62/135 (45.93%), Postives = 92/135 (68.15%), Query Frame = 0
Query:    1 MQAMFDPPPPLEFKKGISKRKPPQVQGVAALFATNADIFENGPPPPKQIYETPRQRHARIAAAKKKSDEDGLTEMVSKWDPKD-DKKATSDAYKTLFVAKISYDTTEKKLRREFEQYGPINNLRMVNDDDGKPRG 134
            ++A+F+P PPLE    ++KRK P   G+       A+ FE   PPP+++ ETP++R  R+   K ++ E  L   + KWDP+  D++ T DAYKTLFV +ISY+TTEK+LR+EFEQYGP+  +R++ D++GK RG
Sbjct:   29 LKALFEPNPPLEHLPQLTKRKMPPYSGLTEF----AETFETAQPPPREVSETPKERRERVRKEKVEAHEAQLQANLEKWDPQAADERKTEDAYKTLFVGRISYETTEKQLRQEFEQYGPVKKIRLIEDEEGKSRG 159          
BLAST of mRNA_S-dermatodea_contig11803.1145.1 vs. uniprot
Match: A0A5D6XVV7_9STRA (RRM domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVV7_9STRA)

HSP 1 Score: 127 bits (318), Expect = 8.290e-33
Identity = 64/135 (47.41%), Postives = 89/135 (65.93%), Query Frame = 0
Query:    1 MQAMFDPPPPLEFKKGISKRKPPQVQGVAALFATNADIFENGPPPPKQIYETPRQRHARIAAAKKKSDEDGLTEMVSKWDPK-DDKKATSDAYKTLFVAKISYDTTEKKLRREFEQYGPINNLRMVNDDDGKPRG 134
            ++A+F+P  PLEF+  + KRK P   G+AA     A+ FE   PPP+++ ETP++R  R+ A +    +  +     KWDP   D++ T DAYKTLFV +ISY+TTEK+LR+EFEQYGP+   R+V D DGK RG
Sbjct:   38 LKALFEPNAPLEFRPKLVKRKMPPYSGIAAF----AEQFEAEAPPPREVSETPKERRERVRAERMAKADAEMLANKEKWDPNAPDERKTEDAYKTLFVGRISYETTEKQLRQEFEQYGPVKRARLVEDPDGKSRG 168          
BLAST of mRNA_S-dermatodea_contig11803.1145.1 vs. uniprot
Match: W7TPI8_9STRA (U1 small nuclear ribonucleoprotein 70 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPI8_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.240e-32
Identity = 66/134 (49.25%), Postives = 87/134 (64.93%), Query Frame = 0
Query:    1 MQAMFDPPPPLEFKKGISKRKPPQVQGVAALFATNADIFENGPPPPKQIYETPRQRHARIAAAKKKSDEDGLTEMVSKWDPKDDKKATSDAYKTLFVAKISYDTTEKKLRREFEQYGPINNLRMVNDDDGKPRG 134
            M+AMF+P PP+EF +   K  P    G++        +FE   PPP++ + + ++R A   AA  K   + +   V  WDPK D+KAT D YKTL VA++SYDTTEKKLRREFEQYGPI ++R+V D DGKPRG
Sbjct:    1 MRAMFEPRPPVEFLRLAPKPPPRPYTGISQYVG----LFETDEPPPRERFLSYKERKAAERAALMKVHAEKVEMEVEDWDPKKDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMDADGKPRG 130          
BLAST of mRNA_S-dermatodea_contig11803.1145.1 vs. uniprot
Match: A0A2P4YPN8_9STRA (U1 snRNP-associated protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YPN8_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.910e-32
Identity = 60/135 (44.44%), Postives = 90/135 (66.67%), Query Frame = 0
Query:    1 MQAMFDPPPPLEFKKGISKRKPPQVQGVAALFATNADIFENGPPPPKQIYETPRQRHARIAAAKKKSDEDGLTEMVSKWDPK-DDKKATSDAYKTLFVAKISYDTTEKKLRREFEQYGPINNLRMVNDDDGKPRG 134
            ++ +F+P  PL+    + KRK P   G+AA      D+FE   PPP+++ ETP++R  R    K ++++  + E  +KWDP  +D + T DAYKTLFV +ISY+TTE++LR EFEQYGP+ ++R+V D +GK RG
Sbjct:   32 LKVLFEPNAPLDHLPRLVKRKMPPYTGLAAFV----DVFEKETPPPREVQETPKERRERRRLEKMEANDSKMQEDRAKWDPNTEDPRKTQDAYKTLFVGRISYETTEQQLRHEFEQYGPVKSVRLVEDPEGKSRG 162          
BLAST of mRNA_S-dermatodea_contig11803.1145.1 vs. uniprot
Match: A0A2D4BHZ3_PYTIN (RRM domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BHZ3_PYTIN)

HSP 1 Score: 125 bits (313), Expect = 4.120e-32
Identity = 65/135 (48.15%), Postives = 88/135 (65.19%), Query Frame = 0
Query:    1 MQAMFDPPPPLEFKKGISKRKPPQVQGVAALFATNADIFENGPPPPKQIYETPRQRHARIAAAKKKSDEDGLTEMVSKWDPKD-DKKATSDAYKTLFVAKISYDTTEKKLRREFEQYGPINNLRMVNDDDGKPRG 134
            ++A+F+P  PL     ++KRK P   GV    A     FE   PPP+ + ETP++R AR+   K    E  L   +SKWDP+  D++ T DAYKTLFV +ISY+TTEK+LR+EFEQYGP+  +R+V D+DGK RG
Sbjct:   29 LKALFEPNAPLPHLPQLTKRKMPPYSGVTDFVAQ----FETEAPPPRVLNETPKERQARLQKEKAAEMEAKLQAEISKWDPQHADERKTDDAYKTLFVGRISYETTEKQLRQEFEQYGPVKKIRLVEDEDGKSRG 159          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11803.1145.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2P6_ECTSI1.470e-6069.12RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2Y0A0_9STRA2.840e-4054.48Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
H6WBA2_VAULI5.250e-3954.48RRM domain-containing protein n=1 Tax=Vaucheria li... [more]
A0A7S2B852_9STRA1.020e-3753.33Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A813CET9_9DINO5.640e-3449.22RNU1 protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
A0A8K1CMI4_PYTOL1.120e-3345.93Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XVV7_9STRA8.290e-3347.41RRM domain-containing protein n=1 Tax=Pythium bras... [more]
W7TPI8_9STRA1.240e-3249.25U1 small nuclear ribonucleoprotein 70 n=1 Tax=Nann... [more]
A0A2P4YPN8_9STRA1.910e-3244.44U1 snRNP-associated protein (Fragment) n=1 Tax=Phy... [more]
A0A2D4BHZ3_PYTIN4.120e-3248.15RRM domain-containing protein n=1 Tax=Pythium insi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 95..134
e-value: 3.6E-8
score: 33.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 93..134
score: 11.384
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 51..134
e-value: 8.5E-12
score: 47.1
IPR022023U1 small nuclear ribonucleoprotein of 70kDa N-terminalPFAMPF12220U1snRNP70_Ncoord: 2..84
e-value: 4.0E-12
score: 46.6
IPR040252U1 small nuclear ribonucleoprotein 70kDaPANTHERPTHR13952:SF5U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDAcoord: 2..134
NoneNo IPR availablePANTHERPTHR13952U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDcoord: 2..134
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 84..134

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11803contigS-dermatodea_contig11803:168..6186 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11803.1145.1mRNA_S-dermatodea_contig11803.1145.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig11803 165..6186 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig11803.1145.1 ID=prot_S-dermatodea_contig11803.1145.1|Name=mRNA_S-dermatodea_contig11803.1145.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=135bp
MQAMFDPPPPLEFKKGISKRKPPQVQGVAALFATNADIFENGPPPPKQIY
ETPRQRHARIAAAKKKSDEDGLTEMVSKWDPKDDKKATSDAYKTLFVAKI
SYDTTEKKLRREFEQYGPINNLRMVNDDDGKPRG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR022023U1snRNP70_N
IPR040252SNRNP70
IPR035979RBD_domain_sf