prot_S-dermatodea_contig11471.956.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig11471.956.1
Unique Nameprot_S-dermatodea_contig11471.956.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length495
Homology
BLAST of mRNA_S-dermatodea_contig11471.956.1 vs. uniprot
Match: D8LSH2_ECTSI (Lissencephaly protein 1-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH2_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.080e-12
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 0
Query:  452 VDRRALPDALAGTLDHIVGQLDMLTRTVGVLEQRLTLAEDRLQQ 495
            VDR ALP+ALAGTLDHIVGQLDMLTRTVGVLEQRLTL EDRLQQ
Sbjct:  624 VDRGALPEALAGTLDHIVGQLDMLTRTVGVLEQRLTLTEDRLQQ 667          
BLAST of mRNA_S-dermatodea_contig11471.956.1 vs. uniprot
Match: A0A6H5KSG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG1_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.450e-12
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 0
Query:  452 VDRRALPDALAGTLDHIVGQLDMLTRTVGVLEQRLTLAEDRLQQ 495
            VDR ALP+ALAGTLDHIVGQLDMLTRTVG+LEQRLTL EDRLQQ
Sbjct:  606 VDRGALPEALAGTLDHIVGQLDMLTRTVGLLEQRLTLTEDRLQQ 649          
BLAST of mRNA_S-dermatodea_contig11471.956.1 vs. uniprot
Match: A0A6J0DC80_PERMB (POC1 centriolar protein homolog A-like n=1 Tax=Peromyscus maniculatus bairdii TaxID=230844 RepID=A0A6J0DC80_PERMB)

HSP 1 Score: 60.5 bits (145), Expect = 5.870e-8
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 0
Query:  451 PVDRRALPDALAGTLDHIVGQLDMLTRTVGVLEQRLTLAEDRLQQ 495
            P +  ++P  L  TL+HIVGQLD+LT+TV +LEQRLTLAED+L+Q
Sbjct:   31 PQEPVSVPQTLTSTLEHIVGQLDVLTQTVSILEQRLTLAEDKLKQ 75          
BLAST of mRNA_S-dermatodea_contig11471.956.1 vs. uniprot
Match: A0A7S0WR42_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WR42_9CHLO)

HSP 1 Score: 61.2 bits (147), Expect = 7.240e-8
Identity = 26/44 (59.09%), Postives = 38/44 (86.36%), Query Frame = 0
Query:  450 PPVDRRALPDALAGTLDHIVGQLDMLTRTVGVLEQRLTLAEDRL 493
            PP++   LPD+LA TL HIVGQLD+LT+T+ +L++RLT++EDR+
Sbjct:   40 PPLNLNELPDSLAATLQHIVGQLDVLTQTMALLDERLTISEDRV 83          
BLAST of mRNA_S-dermatodea_contig11471.956.1 vs. uniprot
Match: UPI001659BF5B (POC1 centriolar protein homolog A-like isoform X4 n=1 Tax=Halichoerus grypus TaxID=9711 RepID=UPI001659BF5B)

HSP 1 Score: 59.3 bits (142), Expect = 1.310e-7
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 0
Query:  451 PVDRRALPDALAGTLDHIVGQLDMLTRTVGVLEQRLTLAEDRLQQ 495
            P +  ++P  L  TL+HIVGQLD+LT+TV +LEQRLTL ED+L+Q
Sbjct:   26 PQEPISMPQTLTSTLEHIVGQLDVLTQTVSILEQRLTLTEDKLKQ 70          
BLAST of mRNA_S-dermatodea_contig11471.956.1 vs. uniprot
Match: A0A061I7B3_CRIGR (Putative POC1 centriolar protein (Fragment) n=1 Tax=Cricetulus griseus TaxID=10029 RepID=A0A061I7B3_CRIGR)

HSP 1 Score: 61.6 bits (148), Expect = 1.490e-7
Identity = 28/43 (65.12%), Postives = 37/43 (86.05%), Query Frame = 0
Query:  453 DRRALPDALAGTLDHIVGQLDMLTRTVGVLEQRLTLAEDRLQQ 495
            +R ++P  L  TL+HIVGQLD+LT+TV +LEQRLTLAED+L+Q
Sbjct:  113 ERVSMPQTLTSTLEHIVGQLDVLTQTVSILEQRLTLAEDKLKQ 155          
BLAST of mRNA_S-dermatodea_contig11471.956.1 vs. uniprot
Match: A0A7J7UDW8_MYOMY (POC1 centriolar protein A n=1 Tax=Myotis myotis TaxID=51298 RepID=A0A7J7UDW8_MYOMY)

HSP 1 Score: 58.9 bits (141), Expect = 1.620e-7
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 0
Query:  451 PVDRRALPDALAGTLDHIVGQLDMLTRTVGVLEQRLTLAEDRLQQ 495
            P +  + P AL  TL+HIVGQLD+LT+TV +LEQRLTL ED+L+Q
Sbjct:   22 PREPASTPQALTSTLEHIVGQLDVLTQTVCILEQRLTLTEDKLKQ 66          
BLAST of mRNA_S-dermatodea_contig11471.956.1 vs. uniprot
Match: A0A7D9DCN9_PARCT (POC1 centriolar homolog A-like isoform X1 n=3 Tax=Alcyonacea TaxID=40677 RepID=A0A7D9DCN9_PARCT)

HSP 1 Score: 64.7 bits (156), Expect = 1.770e-7
Identity = 29/45 (64.44%), Postives = 40/45 (88.89%), Query Frame = 0
Query:  451 PVDRRALPDALAGTLDHIVGQLDMLTRTVGVLEQRLTLAEDRLQQ 495
            P++RR +P  LA TL+HIVGQLD+LT+TV +LEQRLT+AED+L++
Sbjct:  391 PLERREIPAQLATTLEHIVGQLDVLTQTVSILEQRLTMAEDKLRE 435          
BLAST of mRNA_S-dermatodea_contig11471.956.1 vs. uniprot
Match: A0A835Z3N7_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3N7_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.980e-7
Identity = 30/43 (69.77%), Postives = 37/43 (86.05%), Query Frame = 0
Query:  452 VDRRALPDALAGTLDHIVGQLDMLTRTVGVLEQRLTLAEDRLQ 494
            V R  LP  LAGTLDHIVGQLD++TRT+ +LEQRLTLAED+++
Sbjct:  446 VSRDELPAVLAGTLDHIVGQLDIVTRTLAILEQRLTLAEDKIE 488          
BLAST of mRNA_S-dermatodea_contig11471.956.1 vs. uniprot
Match: UPI0007B7EE92 (POC1 centriolar protein homolog A-like n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=UPI0007B7EE92)

HSP 1 Score: 58.5 bits (140), Expect = 2.100e-7
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 0
Query:  434 RAGGVGVEGAAVGVGVPPVDRR--ALPDALAGTLDHIVGQLDMLTRTVGVLEQRLTLAEDRLQQ 495
            RAGGV  + ++    V P   +  ++P ALA TL HIVGQLD+LT+TV +LEQRLTL ED+L++
Sbjct:    3 RAGGVSSQKSSSTAPVSPGAGQPDSVPAALASTLQHIVGQLDVLTQTVAILEQRLTLTEDKLKE 66          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11471.956.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSH2_ECTSI1.080e-1293.18Lissencephaly protein 1-like n=1 Tax=Ectocarpus si... [more]
A0A6H5KSG1_9PHAE2.450e-1290.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6J0DC80_PERMB5.870e-862.22POC1 centriolar protein homolog A-like n=1 Tax=Per... [more]
A0A7S0WR42_9CHLO7.240e-859.09Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
UPI001659BF5B1.310e-760.00POC1 centriolar protein homolog A-like isoform X4 ... [more]
A0A061I7B3_CRIGR1.490e-765.12Putative POC1 centriolar protein (Fragment) n=1 Ta... [more]
A0A7J7UDW8_MYOMY1.620e-762.22POC1 centriolar protein A n=1 Tax=Myotis myotis Ta... [more]
A0A7D9DCN9_PARCT1.770e-764.44POC1 centriolar homolog A-like isoform X1 n=3 Tax=... [more]
A0A835Z3N7_9STRA1.980e-769.77WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
UPI0007B7EE922.100e-753.13POC1 centriolar protein homolog A-like n=1 Tax=Sin... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 7..46
e-value: 3.4E-9
score: 46.5
coord: 49..88
e-value: 3.1E-9
score: 46.7
IPR001680WD40 repeatPFAMPF00400WD40coord: 9..46
e-value: 1.1E-7
score: 32.5
coord: 50..87
e-value: 5.5E-7
score: 30.2
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 56..87
score: 12.113
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 14..55
score: 17.359
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..102
e-value: 4.9E-28
score: 100.4
NoneNo IPR availablePANTHERPTHR44019FAMILY NOT NAMEDcoord: 1..90
coord: 454..494
NoneNo IPR availablePANTHERPTHR44019:SF1POC1 CENTRIOLAR PROTEIN HOMOLOG Bcoord: 1..90
coord: 454..494
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 33..47
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..97
score: 26.946
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 2..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11471contigS-dermatodea_contig11471:235..7266 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11471.956.1mRNA_S-dermatodea_contig11471.956.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig11471 235..7266 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig11471.956.1 ID=prot_S-dermatodea_contig11471.956.1|Name=mRNA_S-dermatodea_contig11471.956.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=495bp
QVWDARSHQLLQHYPAHDEEVTSISFHESGNFLLSSSVDSSLKVWDLREG
RLLYTLKGHAGPVTACAFSADGSRFASGGVDGLVMSWRSHLCDRFGAGST
GASTAVAAAAVVSKGAFDETAEAKSGRAWAGPRGGDGVGAGAGVRRTALG
ARTTNARLGVRRSGGASYASRDARRVGAPGSRPVDASFTPPAGAGVGGGA
GGDSGGAYEFYPDYHTAACTSVRAPSSLRYPRDTHNNHRTPAPATAPAPI
ASGVGRRGREHGHGHGHEHGREEGLRHRFGVEDLETELRDVYPRSSAAAA
AAAATVTATRRGARYPADGGGNRGGGGDDCAQVEDPHPVTTAPAAAASGR
RAPVTAAATGWDPGFHNNEWDAGRGALPVRAAAATAAAAGGMHSGVGSGG
GGEEGIGFGFGFGGVPSGRGLGERSGAWRQGWGRAGGVGVEGAAVGVGVP
PVDRRALPDALAGTLDHIVGQLDMLTRTVGVLEQRLTLAEDRLQQ
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf