prot_S-dermatodea_contig11211.780.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-dermatodea_contig11211.780.1
Unique Name	prot_S-dermatodea_contig11211.780.1
Type	polypeptide
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length	119

Homology

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BLAST of mRNA_S-dermatodea_contig11211.780.1 vs. uniprot
Match: D8LE56_ECTSI (TFIIS-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE56_ECTSI)

HSP 1 Score: 237 bits (604), Expect = 2.180e-77
Identity = 110/118 (93.22%), Postives = 115/118 (97.46%), Query Frame = 0

Query:    1 MADTMRFCSECNNIMYPKENKADRKLMYACSRCTYQEAAESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS 118
            MADTMRFCSECNNIM+PKENK DRKLMY+C+RC Y+E A+SGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS
Sbjct:  120 MADTMRFCSECNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS 237

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BLAST of mRNA_S-dermatodea_contig11211.780.1 vs. uniprot
Match: A0A835YYP5_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYP5_9STRA)

HSP 1 Score: 162 bits (410), Expect = 1.280e-49
Identity = 77/113 (68.14%), Postives = 90/113 (79.65%), Query Frame = 0

Query:    5 MRFCSECNNIMYPKENKADRKLMYACSRCTYQEAAESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWV 117
            MRFC ECNNI++PKEN+  R L YAC+RC Y+E A   SCVY NNL+ T   KLDIV  DVV+DPTLQRSK+ IC++CNY+EAVFFQAD+ AKS SLSLIFVCT+  CG KWV
Sbjct:    1 MRFCKECNNILHPKENRTTRTLFYACNRCAYREEAGQ-SCVYENNLVKTTELKLDIVHEDVVNDPTLQRSKHQICDRCNYSEAVFFQADDSAKSSSLSLIFVCTH--CGKKWV 110

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BLAST of mRNA_S-dermatodea_contig11211.780.1 vs. uniprot
Match: A0A1B6PTV6_SORBI (DNA-directed RNA polymerase subunit n=2 Tax=Andropogoneae TaxID=147429 RepID=A0A1B6PTV6_SORBI)

HSP 1 Score: 125 bits (314), Expect = 5.930e-35
Identity = 57/113 (50.44%), Postives = 77/113 (68.14%), Query Frame = 0

Query:    4 TMRFCSECNNIMYPKENKADRKLMYACSRCTYQEAAESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 116
            TMRFC ECNNI+YPKE++A++ L+YAC  C +QE A+S +CVYRN +   AG    ++  DV  DPTL R+K+  C  C + EAVFFQA    +   ++L FVC N +CGH+W
Sbjct:    3 TMRFCRECNNILYPKEDRANKVLLYACRNCEHQEVADS-NCVYRNVVDHDAGELTQVLSEDVASDPTLPRTKSVRCAACGHGEAVFFQATTRGED-GMALFFVCCNPSCGHRW 113

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BLAST of mRNA_S-dermatodea_contig11211.780.1 vs. uniprot
Match: A0A2I4F1N3_JUGRE (DNA-directed RNA polymerase subunit n=38 Tax=Magnoliopsida TaxID=3398 RepID=A0A2I4F1N3_JUGRE)

HSP 1 Score: 125 bits (313), Expect = 8.170e-35
Identity = 57/113 (50.44%), Postives = 80/113 (70.80%), Query Frame = 0

Query:    4 TMRFCSECNNIMYPKENKADRKLMYACSRCTYQEAAESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 116
            TM+FC ECNNI+YPKE+K  + L+YAC  C +QEAA++ +CVYRN +  + G +  ++Q DV  DPTL R+K+  C +CN+ EAVFFQA    + + ++L FVC N  CGH+W
Sbjct:    3 TMKFCRECNNILYPKEDKEQKILLYACRNCDHQEAADN-NCVYRNEIHHSVGERTQVLQ-DVAADPTLPRTKSVRCAECNHGEAVFFQATARGE-EGMTLFFVCCNPNCGHRW 112

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BLAST of mRNA_S-dermatodea_contig11211.780.1 vs. uniprot
Match: A0A6P5Z8D8_DURZI (DNA-directed RNA polymerase subunit n=2 Tax=Malvaceae TaxID=3629 RepID=A0A6P5Z8D8_DURZI)

HSP 1 Score: 124 bits (312), Expect = 1.160e-34
Identity = 58/113 (51.33%), Postives = 78/113 (69.03%), Query Frame = 0

Query:    4 TMRFCSECNNIMYPKENKADRKLMYACSRCTYQEAAESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 116
            TM+FC ECNNI+YPKE++  + L+YAC  C +QE AE  +CVYRN +  +AG +  I+Q DV  DPTL R+K+ IC  C + EAVFFQA    + + ++L FVC N  CGH+W
Sbjct:    3 TMKFCRECNNILYPKEDREQKILLYACRNCDHQEVAED-NCVYRNEVHHSAGERTQILQ-DVAADPTLPRTKSVICANCKHGEAVFFQATARGE-EGMTLFFVCCNPNCGHRW 112

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BLAST of mRNA_S-dermatodea_contig11211.780.1 vs. uniprot
Match: A0A0K9RIQ4_SPIOL (DNA-directed RNA polymerase subunit n=3 Tax=Spermatophyta TaxID=58024 RepID=A0A0K9RIQ4_SPIOL)

HSP 1 Score: 124 bits (311), Expect = 1.650e-34
Identity = 57/113 (50.44%), Postives = 78/113 (69.03%), Query Frame = 0

Query:    4 TMRFCSECNNIMYPKENKADRKLMYACSRCTYQEAAESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 116
            TM+FC ECNNI+YPKE+K  + L YAC  C +QE AE+ +CVYRN +    G +  ++Q DV  DPTL R+K+  C +CN+ EAVFFQA    + + ++L FVC N +CGH+W
Sbjct:    3 TMKFCRECNNILYPKEDKDQKILQYACRNCDHQEIAEN-NCVYRNEIHHAVGERTQVLQ-DVAADPTLPRTKSVRCTQCNHGEAVFFQATSRGE-EGMTLFFVCCNPSCGHRW 112

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BLAST of mRNA_S-dermatodea_contig11211.780.1 vs. uniprot
Match: A0A6P4PU27_GOSAR (DNA-directed RNA polymerase subunit n=7 Tax=Gossypium TaxID=3633 RepID=A0A6P4PU27_GOSAR)

HSP 1 Score: 124 bits (310), Expect = 2.340e-34
Identity = 58/113 (51.33%), Postives = 78/113 (69.03%), Query Frame = 0

Query:    4 TMRFCSECNNIMYPKENKADRKLMYACSRCTYQEAAESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 116
            TM+FC ECNNI+YPKE++  + L+YAC  C +QE AE+ +CVYRN +  +AG +  I+Q DV  DPTL R+K  IC  C + EAVFFQA    + + ++L FVC N  CGH+W
Sbjct:    3 TMKFCRECNNILYPKEDREQKILLYACRNCDHQEVAEN-NCVYRNEVHHSAGERTQILQ-DVAADPTLPRTKAVICANCKHGEAVFFQATARGE-EGMTLFFVCCNPNCGHRW 112

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BLAST of mRNA_S-dermatodea_contig11211.780.1 vs. uniprot
Match: A0A6J1AX74_9ROSI (DNA-directed RNA polymerase subunit n=2 Tax=Malvaceae TaxID=3629 RepID=A0A6J1AX74_9ROSI)

HSP 1 Score: 124 bits (310), Expect = 2.340e-34
Identity = 57/113 (50.44%), Postives = 79/113 (69.91%), Query Frame = 0

Query:    4 TMRFCSECNNIMYPKENKADRKLMYACSRCTYQEAAESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 116
            TM+FC ECNNI+YPKE++  + L+YAC  C +QE A++ +CVYRN +  +AG +  I+Q DV  DPTL R+K+ IC  C + EAVFFQA    + + ++L FVC N  CGH+W
Sbjct:    3 TMKFCRECNNILYPKEDREQKILLYACRNCDHQEVADN-NCVYRNEVHHSAGERTQILQ-DVAADPTLPRTKSVICANCKHGEAVFFQATARGE-EGMTLFFVCCNPNCGHRW 112

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BLAST of mRNA_S-dermatodea_contig11211.780.1 vs. uniprot
Match: A0A1Y1IMB2_KLENI (DNA-directed RNA polymerase subunit n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMB2_KLENI)

HSP 1 Score: 124 bits (310), Expect = 2.410e-34
Identity = 59/113 (52.21%), Postives = 76/113 (67.26%), Query Frame = 0

Query:    4 TMRFCSECNNIMYPKENKADRKLMYACSRCTYQEAAESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 116
            TM+FC ECNNI+YP+ENKA+++L YAC RC + E AE  SCVYRN +  TA  +  ++Q DV  DPTL RSK   C  C + EAVFFQA    + + ++L FVC N  C H+W
Sbjct:    3 TMKFCRECNNILYPRENKAEKRLEYACGRCDFSEDAEQ-SCVYRNEIHHTADERTQVLQ-DVTSDPTLPRSKALRCPVCKHGEAVFFQATSRGE-EGMTLFFVCCNPNCQHRW 112

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BLAST of mRNA_S-dermatodea_contig11211.780.1 vs. uniprot
Match: A0A5D2M575_GOSTO (DNA-directed RNA polymerase subunit n=2 Tax=Gossypium TaxID=3633 RepID=A0A5D2M575_GOSTO)

HSP 1 Score: 124 bits (310), Expect = 9.300e-34
Identity = 58/113 (51.33%), Postives = 78/113 (69.03%), Query Frame = 0

Query:    4 TMRFCSECNNIMYPKENKADRKLMYACSRCTYQEAAESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 116
            TM+FC ECNNI+YPKE++  + L+YAC  C +QE AE+ +CVYRN +  +AG +  I+Q DV  DPTL R+K  IC  C + EAVFFQA    + + ++L FVC N  CGH+W
Sbjct:   50 TMKFCRECNNILYPKEDREQKILLYACRNCDHQEVAEN-NCVYRNEVHHSAGERTQILQ-DVAADPTLPRTKAVICANCKHGEAVFFQATARGE-EGMTLFFVCCNPNCGHRW 159

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig11211.780.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig11211.780.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LE56_ECTSI	2.180e-77	93.22	TFIIS-type domain-containing protein n=1 Tax=Ectoc...	[more]
A0A835YYP5_9STRA	1.280e-49	68.14	DNA-directed RNA polymerase subunit n=1 Tax=Tribon...	[more]
A0A1B6PTV6_SORBI	5.930e-35	50.44	DNA-directed RNA polymerase subunit n=2 Tax=Androp...	[more]
A0A2I4F1N3_JUGRE	8.170e-35	50.44	DNA-directed RNA polymerase subunit n=38 Tax=Magno...	[more]
A0A6P5Z8D8_DURZI	1.160e-34	51.33	DNA-directed RNA polymerase subunit n=2 Tax=Malvac...	[more]
A0A0K9RIQ4_SPIOL	1.650e-34	50.44	DNA-directed RNA polymerase subunit n=3 Tax=Sperma...	[more]
A0A6P4PU27_GOSAR	2.340e-34	51.33	DNA-directed RNA polymerase subunit n=7 Tax=Gossyp...	[more]
A0A6J1AX74_9ROSI	2.340e-34	50.44	DNA-directed RNA polymerase subunit n=2 Tax=Malvac...	[more]
A0A1Y1IMB2_KLENI	2.410e-34	52.21	DNA-directed RNA polymerase subunit n=1 Tax=Klebso...	[more]
A0A5D2M575_GOSTO	9.300e-34	51.33	DNA-directed RNA polymerase subunit n=2 Tax=Gossyp...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001529	DNA-directed RNA polymerase, M/15kDa subunit	SMART	SM00661	rpol9cneu	coord: 6..61 e-value: 4.1E-10 score: 49.6
IPR001529	DNA-directed RNA polymerase, M/15kDa subunit	PFAM	PF02150	RNA_POL_M_15KD	coord: 5..40 e-value: 9.5E-11 score: 41.4
IPR001222	Zinc finger, TFIIS-type	SMART	SM00440	Cys4_2	coord: 77..118 e-value: 0.0023 score: 21.3
IPR001222	Zinc finger, TFIIS-type	PFAM	PF01096	TFIIS_C	coord: 78..116 e-value: 1.8E-5 score: 24.5
IPR001222	Zinc finger, TFIIS-type	PROSITE	PS51133	ZF_TFIIS_2	coord: 75..117 score: 9.338
IPR012164	DNA-directed RNA polymerase subunit/transcription factor S	PIRSF	PIRSF005586	RNApol_RpoM	coord: 5..118 e-value: 1.1E-15 score: 56.0
None	No IPR available	GENE3D	2.20.25.10		coord: 2..48 e-value: 5.7E-20 score: 72.4
None	No IPR available	GENE3D	2.20.25.10		coord: 49..118 e-value: 1.9E-21 score: 77.4
None	No IPR available	PANTHER	PTHR11239	DNA-DIRECTED RNA POLYMERASE	coord: 3..117
None	No IPR available	PANTHER	PTHR11239:SF1	DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9	coord: 3..117
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 4..48
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 56..116
IPR019761	DNA-directed RNA polymerase M, 15kDa subunit, conserved site	PROSITE	PS01030	RNA_POL_M_15KD	coord: 7..33

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig11211	contig	S-dermatodea_contig11211:2402..5298 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig11211.780.1	mRNA_S-dermatodea_contig11211.780.1	Saccorhiza dermatodea SderLu1190fm monoicous	mRNA	S-dermatodea_contig11211 2208..5455 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-dermatodea_contig11211.780.1 ID=prot_S-dermatodea_contig11211.780.1|Name=mRNA_S-dermatodea_contig11211.780.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=119bp
MADTMRFCSECNNIMYPKENKADRKLMYACSRCTYQEAAESGSCVYRNNL
ITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQS
LSLIFVCTNRACGHKWVS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001529	DNA-dir_RNA_pol_M/15kDasu
IPR001222	Znf_TFIIS
IPR012164	Rpa12/Rpb9/Rpc10/TFS
IPR019761	DNA-dir_RNA_pol-M_15_CS