prot_S-dermatodea_contig11023.680.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig11023.680.1
Unique Nameprot_S-dermatodea_contig11023.680.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length116
Homology
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BLAST of mRNA_S-dermatodea_contig11023.680.1 vs. uniprot
Match: D8LJA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJA9_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 1.010e-44
Identity = 88/115 (76.52%), Postives = 93/115 (80.87%), Query Frame = 0 
Query:    1 MVGTALSKHMGPGAAFSESCPAVPSVIVSAFSAQAFVWLDLLLMAGVFAAARSGNAMLLFSSFGLHFLAASVTVLNLFEGGCAASLPLLYGVVVLSAVALLRFGPLKSAMAGLRR 115
            MVGTALSKHMGPGAAFS SCP VPSVIVSA SAQAFV LDLLLMA  FAAARSG+A L+  SFGLHF AA  T  N  EGGC ASLPLLYGVV L+A+AL R+ PLKSAM  LRR
Sbjct:  170 MVGTALSKHMGPGAAFSPSCPHVPSVIVSALSAQAFVVLDLLLMAAAFAAARSGDAGLMSFSFGLHFAAALTTGFNFIEGGCTASLPLLYGVVALAAIALTRYRPLKSAMIRLRR 284
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11023.680.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJA9_ECTSI1.010e-4476.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009294Gamma-secretase subunit Aph-1PFAMPF06105Aph-1coord: 2..100
e-value: 4.5E-10
score: 39.3
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 106..115
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..25
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 84..105
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 52..57
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 58..78
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 79..83
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 26..51
NoneNo IPR availableTMHMMTMhelixcoord: 83..105
NoneNo IPR availableTMHMMTMhelixcoord: 27..49
NoneNo IPR availableTMHMMTMhelixcoord: 56..78

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11023contigS-dermatodea_contig11023:2979..6420 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11023.680.1mRNA_S-dermatodea_contig11023.680.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig11023 1977..7129 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig11023.680.1 ID=prot_S-dermatodea_contig11023.680.1|Name=mRNA_S-dermatodea_contig11023.680.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=116bp
MVGTALSKHMGPGAAFSESCPAVPSVIVSAFSAQAFVWLDLLLMAGVFAA
ARSGNAMLLFSSFGLHFLAASVTVLNLFEGGCAASLPLLYGVVVLSAVAL
LRFGPLKSAMAGLRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009294Aph-1